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SAM files (*.sam.bz2) as optional output of MetaPhlAn for subsequent StrainPhlAn analysis #634

@mr2raccoon

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@mr2raccoon

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Hey,

it would be nice to optionally have SAM files (*.sam.bz2) generated from MetaPhlAn to be able to chain StrainPhlAn after running taxprofiler for strain-level resolution.

Thank you

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