From 52f4f8350872abbb7cc73ea33227e0978696eed5 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Tue, 4 Mar 2025 12:29:15 +0000 Subject: [PATCH 01/17] Finalise genomics nf-test doc --- docs/nf4_science/genomics/04_testing.md | 753 +++++++++++------------- 1 file changed, 347 insertions(+), 406 deletions(-) diff --git a/docs/nf4_science/genomics/04_testing.md b/docs/nf4_science/genomics/04_testing.md index 77f502e7d..e9e0dea41 100644 --- a/docs/nf4_science/genomics/04_testing.md +++ b/docs/nf4_science/genomics/04_testing.md @@ -1,76 +1,50 @@ -# Part 4: Hello nf-test +# Part 3: adding tests -THIS IS A PLACEHOLDER +In the first part of this course, you built a variant calling pipeline that was completely linear and processed each sample's data independently of the others. -!!!note - - This training module is under redevelopment. +In the second part, we showed you how to use channels and channel operators to implement joint variant calling with GATK. -Being able to systematically test that every part of your workflow is doing what it's supposed to do is critical for reproducibility and long-term maintenance. -And it's also helpful during the development process! +In the third part, we modularized the pipeline. -This is (hopefully) not controversial. -However, people often focus on setting up top-level tests, in which the workflow is run on some test data from start to finish. -This is useful, but unfortunately incomplete. -You should also implement tests at the level of each individual module (equivalent to what is called 'unit tests' in general software engineering) to verify the functionality of individual components of your workflow. -That will ensure that each module performs as expected under different conditions and inputs. -And it also means that when you assemble a new workflow from existing modules that already have tests, you get built-in testing for free! +In this part of the training, we're going to show you how to use [**nf-test**](https://www.nf-test.com/), a testing framework that integrates well with Nextflow and makes it straightforward to add both module-level and workflow-level tests to your pipeline. To follow this part of the training, you should have completed Part 1, Part 2, and Part 3, as well as the [nf-test side quest](../../side_quests/nf-test.md), which covers the basics of nf-test, and why testing is important. -In this part of the training, we're going to show you how to use [**nf-test**](https://www.nf-test.com/), a testing framework that integrates well with Nextflow and makes it straightforward to add both module-level and workflow-level tests to your pipeline. -For more background information about nf-test, we recommend you read [this blog post](https://nextflow.io/blog/2024/nf-test-in-nf-core.html). --- ## 0. Warmup -We're going to add a few different types of tests to the three processes in our pipeline, as well as a workflow-level test. - -Similarly to we did in Part 6 (Hello Modules), we're going to be working with a clean set of project files inside the project directory called `hello-nf-test`. - -!!!note - - If you haven't worked through the previous parts of this training course, you should consider doing so now to understand how the code is organized. - In a nutshell, this is a modularized pipeline; the processes are in local modules and the parameter declarations are in a configuration file. +!!! note -### 0.1. Explore the `hello-nf-test` directory + Make sure you're in the correct working directory: + `cd /workspaces/training/nf4-science/genomics` -Let's move into the project directory. -If you're continuing on directly from Part 6, you'll need to move up one directory first. +If you worked through the previous parts of this training course, you should have a working version of the genomics pipeline, with a modules directory structure like: -```bash -cd hello-nf-test -``` - -The `hello-nf-test` directory has the same content and structure that you're expected to end up with in `hello-modules` on completion of Part 6. - -```console title="Directory contents" -hello-nf-test/ -├── demo-params.json -├── main.nf -├── modules -└── nextflow.config +```console title="Directory structure" +modules/ +├── gatk +│ ├── haplotypecaller +│ │ └── main.nf +│ └── jointgenotyping +│ └── main.nf +└── samtools + └── index + └── main.nf ``` -For a detailed description of the files, see the warmup section in Part 6. -For details about the contents of the `modules` directory, read through all of Part 6 (it's pretty short). - -### 0.2. Create a symbolic link to the data +This modules directory can be found in the `solutions` directory if you need it. -Just like last time, we need to set up a symlink to the data. -To do so, run this command from inside the `hello-nf-test` directory: -```bash -ln -s ../data data -``` +We're going to start with the same workflow as in Part 3, which we've provided for you in the file `genomics-4.nf`. Exactly as for the [nf-test side quest](../../side_quests/nf-test.md), we're going to add a few different types of tests to the three processes in this pipeline, as well as a workflow-level test. -This creates a symbolic link called `data` pointing to the data directory one level up. +### 0.1. Check the workflow runs -### 0.3 Run the workflow using the appropriate profiles +Before we start adding tests, let's make sure the workflow runs as expected. -Now that everything is in place, we should be able to run the workflow using the profiles we originally set up in Part 5 (Hello Config). +Let's try running that now. ```bash -nextflow run main.nf -profile my_laptop,demo +nextflow run genomics-3.nf -resume ``` This should look very familiar by now if you've been working through this training course from the start. @@ -78,24 +52,19 @@ This should look very familiar by now if you've been working through this traini ```console title="Output" N E X T F L O W ~ version 24.10.0 - ┃ Launching `main.nf` [special_brenner] DSL2 - revision: 5a07b4894b +Launching `genomics-3.nf` [gloomy_poincare] DSL2 - revision: 43203316e0 executor > local (7) -[26/60774a] SAMTOOLS_INDEX (1) | 3 of 3 ✔ -[5a/eb40c4] GATK_HAPLOTYPECALLER (2) | 3 of 3 ✔ -[8f/94ac86] GATK_JOINTGENOTYPING | 1 of 1 ✔ +[18/89dfa4] SAMTOOLS_INDEX (1) | 3 of 3 ✔ +[30/b2522b] GATK_HAPLOTYPECALLER (2) | 3 of 3 ✔ +[a8/d2c189] GATK_JOINTGENOTYPING | 1 of 1 ✔ ``` -As expected, it all worked. - -Like previously, there will now be a `work` directory and a `results_genomics` directory inside your project directory. -However, we are going to ignore them entirely, because we are no longer going to touch the pipeline itself, and we're not even going to interact directly with Nextflow as such. - -Instead, we are going to interact with the `nf-test` package. +Like previously, there will now be a `work` directory and a `results_genomics` directory inside your project directory. But from now on we're going to be using the `nf-test` package to test the pipeline. -### 0.4. Initialize `nf-test` +### 0.2. Initialize `nf-test` -The `nf-test` package provides an initialization command that sets up a few things in order for us to start developing tests for our project. +As for the [nf-test side quest](../../side_quests/nf-test.md), we need to initialize the `nf-test` package. ```bash nf-test init @@ -115,11 +84,11 @@ It also creates a `tests` directory containing a configuration file stub. ### Takeaway -You know how to initialize `nf-test` in preparation for developing tests. +Now we're ready to start writing tests for our genomics pipeline. ### What's next? -Learn how to write basic tests that evaluate whether the process calls were successful and produced the correct outputs. +Write basic tests that evaluate whether the process calls were successful and produced the correct outputs. --- @@ -134,14 +103,14 @@ We want to test that the process runs successfully and that the file it produces First, we use the `nf-test generate process` command to create a test file stub. ```bash -nf-test generate process modules/local/samtools/index/main.nf +nf-test generate process modules/samtools/index/main.nf ``` This creates a file in the same directory as `main.nf`, summarized in the terminal output as follows: ```console title="Output" -Load source file '/workspaces/training/hello-nextflow/hello-nf-test/modules/local/samtools/index/main.nf' -Wrote process test file '/workspaces/training/hello-nextflow/tests/hello-nf-test/modules/local/samtools/index/main.nf.test +Load source file '/workspaces/training/hello-nextflow/hello-nf-test/modules/samtools/index/main.nf' +Wrote process test file '/workspaces/training/hello-nextflow/tests/hello-nf-test/modules/samtools/index/main.nf.test SUCCESS: Generated 1 test files. ``` @@ -152,7 +121,7 @@ You can navigate to the directory in the file explorer and open the file, which nextflow_process { name "Test Process SAMTOOLS_INDEX" - script "modules/local/samtools/index/main.nf" + script "modules/samtools/index/main.nf" process "SAMTOOLS_INDEX" test("Should run without failures") { @@ -180,40 +149,30 @@ nextflow_process { } ``` -In plain English, the logic of the test reads as follows: -"**When** these _parameters_ are provided to this _process_, **then** we expect to see these results." - -The expected results are formulated as `assert` statements. +The starting assertions should be familiar from the [nf-test side quest](../../side_quests/nf-test.md): - `assert process.success` states that we expect the process to run successfully and complete without any failures. - `snapshot(process.out).match()` states that we expect the result of the run to be identical to the result obtained in a previous run (if applicable). We discuss this in more detail later. -For most real-world modules (which usually require some kind of input), this is not yet a functional test. -We need to add the inputs that will be fed to the process, and any parameters if applicable. +Using this as a starting point, we need to add the right test inputs for the samtools index process, and any parameters if applicable. ### 1.2. Move the test file and update the script path -Before we get to work on filling out the test, we need to move the file to its definitive location. -The preferred convention is to ship tests in a `tests` directory co-located with each module's `main.nf` file, so we create a `tests/` directory in the module's directory: - -```bash -mkdir -p modules/local/samtools/index/tests -``` - -Then we move the test file there: +Before we get to work on filling out the test, we need to move the file to its definitive location. Part of the reason we added a directory for each module is that we can now ship tests in a `tests` directory co-located with each module's `main.nf` file. Let's create that directory and move the test file there. ```bash -mv tests/modules/local/samtools/index/main.nf.test modules/local/samtools/index/tests/ +mkdir -p modules/samtools/index/tests +mv tests/modules/samtools/index/main.nf.test modules/samtools/index/tests/ ``` -As a result, we can update the full path in the `script` section of the test file to a relative path: +Now we can simplify the `script` section of the test file to a relative path: _Before:_ ```groovy title="modules/local/samtools/index/tests/main.nf.test" linenums="3" name "Test Process SAMTOOLS_INDEX" -script "modules/local/samtools/index/main.nf" +script "modules/samtools/index/main.nf" process "SAMTOOLS_INDEX" ``` @@ -225,13 +184,16 @@ script "../main.nf" process "SAMTOOLS_INDEX" ``` -### 1.3. Provide inputs to the test process +This tells the test where to find the module's `main.nf` file, without having to specify the full path. + +### 1.3. Provide test inputs for SAMTOOLS_INDEX -The stub file includes a placeholder that we need to replace with an actual test input: +The stub file includes a placeholder that we need to replace with an actual test input, appropriate to the input of `samtools index`. The appropriate input is a BAM file, which we have available in the `data/bam` directory. _Before:_ -```groovy title="modules/local/samtools/index/tests/main.nf.test" linenums="14" + +```groovy title="modules/samtools/index/tests/main.nf.test" linenums="14" process { """ // define inputs of the process here. Example: @@ -239,12 +201,9 @@ process { """ } ``` - -We choose one of our available data files and plug it into the `process` block: - _After:_ -```groovy title="modules/local/samtools/index/tests/main.nf.test" linenums="14" +```groovy title="modules/samtools/index/tests/main.nf.test" linenums="14" process { """ input[0] = file("${projectDir}/data/bam/reads_son.bam") @@ -254,8 +213,7 @@ process { ### 1.4. Rename the test based on the primary test input -The stub file gives the test a generic name referring to the assertion that it should run without failures. -Since we added a specific input, it's good practice to rename the test accordingly. +As we learned before, it's good practice to rename the test to something that makes sense in the context of the test. _Before:_ @@ -268,8 +226,8 @@ Here we choose to refer to the file name and its format: _After:_ -```groovy title="modules/local/samtools/index/tests/main.nf.test" linenums="7" -test("reads_son [bam]") { +```groovy title="modules/samtools/index/tests/main.nf.test" linenums="7" +test("Should index reads_son.bam correctly") { ``` ### 1.5. Specify test parameters @@ -303,127 +261,84 @@ Finally, it's time to run our test! Let's break down the syntax. - To that, we add `--profile docker_on` to specify that we want Nextflow to run the test with Docker enabled. - Then the test file that we want to run. -!!!note - - The `--profile` parameter is technically optional in the sense that nf-test does not require it. - There is a `nextflow.config` file in the `nf-test` directory where we could write `docker.enable = on` to have Docker enabled by default. - However, it's good practice to test your modules explicitly (and separately) with every packaging system they support. - This allows you to detect issues that might arise when the module no longer works with Docker but still works with Conda, for example. - - Note also the TWO dashes, `--`, because here it's a parameter of the `nf-test test` command, which passes the instruction on to Nextflow itself. - All put together, it looks like this: ```bash -nf-test test --profile docker_on modules/local/samtools/index/tests/main.nf.test +nf-test test modules/samtools/index/tests/main.nf.test ``` This should produce the following output: ```console title="Output" -🚀 nf-test 0.9.1 +🚀 nf-test 0.9.2 https://www.nf-test.com (c) 2021 - 2024 Lukas Forer and Sebastian Schoenherr Test Process SAMTOOLS_INDEX - Test [f2eed6af] 'reads_son [bam]' PASSED (9.01s) + Test [e761f2e2] 'Should index reads_son.bam correctly' PASSED (11.226s) Snapshots: - 1 created [reads_son [bam]] + 1 created [Should index reads_son.bam correctly] Snapshot Summary: 1 created -SUCCESS: Executed 1 tests in 9.062s +SUCCESS: Executed 1 tests in 11.265s ``` -The test verified the first assertion, that the process should complete successfully. - -Additionally, this also produces a snapshot file called `main.nf.test.snap` that captures all the output channels and the MD5SUMs of all elements. - -If we re-run the test, the program will check that the new output matches the output that was originally recorded. - -!!!warning - - That means we have to be sure that the output we record in the original run is correct! - -If, in the course of future development, something in the code changes that causes the output to be different, the test will fail and we will have to determine whether the change is expected or not. - -- If it turns out that something in the code broke, we will have to fix it, with the expectation that the fixed code will pass the test. -- If it is an expected change (e.g., the tool has been improved and the results are better) then we will need to update the snapshot to accept the new output as the reference to match, using the parameter `--update-snapshot` when we run the test command. - -### 1.7. Add more tests to `SAMTOOLS_INDEX` - -Sometimes it's useful to test a range of different input files to ensure we're testing for a variety of potential issues. - -We can add as many tests as we want inside the same test file for a module. - -Try adding the following tests to the module's test file: - -```groovy title="modules/local/samtools/index/tests/main.nf.test" linenums="27" -test("reads_mother [bam]") { - - when { - params { - outdir = "tests/results" - } - process { - """ - input[0] = file("${projectDir}/data/bam/reads_mother.bam") - """ - } - } +As we learned previously, this verified the basic assertion about the success of the process and created a snapshot file based on the output of the process. We can see the contents of the snapshot file in the `tests/modules/samtools/index/tests/main.nf.test.snap` file: - then { - assert process.success - assert snapshot(process.out).match() +```json title="tests/modules/samtools/index/tests/main.nf.test.snap" linenums="1" +{ + "Should index reads_son.bam correctly": { + "content": [ + { + "0": [ + [ + "reads_son.bam:md5,af5956d9388ba017944bef276b71d809", + "reads_son.bam.bai:md5,a2ca7b84998218ee77eff14af8eb8ca2" + ] + ] + } + ], + "meta": { + "nf-test": "0.9.2", + "nextflow": "24.10.0" + }, + "timestamp": "2025-03-03T16:59:54.195992321" } - } ``` -And: +We can also run the test again and see that it passes, because the output is identical to the snapshot: -```groovy title="modules/local/samtools/index/tests/main.nf.test" linenums="47" -test("reads_father [bam]") { +```bash +nf-test test modules/samtools/index/tests/main.nf.test +``` - when { - params { - outdir = "tests/results" - } - process { - """ - input[0] = file("${projectDir}/data/bam/reads_father.bam") - """ - } - } +```console title="Output" +🚀 nf-test 0.9.2 +https://www.nf-test.com +(c) 2021 - 2024 Lukas Forer and Sebastian Schoenherr - then { - assert process.success - assert snapshot(process.out).match() - } -} -``` +Test Process SAMTOOLS_INDEX -These simply go one after another in the test file. + Test [625e39ee] 'Should index reads_son.bam correctly' PASSED (11.91s) -!!! warning - Watch out for those curly braces, make sure they're all paired up appropriately... +SUCCESS: Executed 1 tests in 11.947s +``` -### 1.8. Run the test suite and update the snapshot -```bash -nf-test test --profile docker_on modules/local/samtools/index/tests/main.nf.test --update-snapshot -``` +### 1.7. Add more tests to `SAMTOOLS_INDEX` -This should produce the following output: +Sometimes it's useful to test a range of different input files to ensure we're testing for a variety of potential issues. Let's also test for the mother and father's bam files in the trio from our test data. Add the following tests to the test file: -```console title="Output" -🚀 nf-test 0.9.1 +```groovy title="modules/samtools/index/tests/main.nf.test" linenums="27" +🚀 nf-test 0.9.2 https://www.nf-test.com (c) 2021 - 2024 Lukas Forer and Sebastian Schoenherr @@ -431,12 +346,17 @@ Warning: every snapshot that fails during this test run is re-record. Test Process SAMTOOLS_INDEX - Test [bc664c47] 'reads_son [bam]' PASSED (9.6s) - Test [f413ec92] 'reads_mother [bam]' PASSED (9.138s) - Test [99a73481] 'reads_father [bam]' PASSED (9.536s) + Test [625e39ee] 'Should index reads_son.bam correctly' PASSED (10.916s) + Test [a8b28f36] 'Should index reads_mother.bam correctly' PASSED (11.147s) + Test [c15852a1] 'Should index reads_father.bam correctly' PASSED (10.785s) + Snapshots: + 2 created [Should index reads_father.bam correctly, Should index reads_mother.bam correctly] + +Snapshot Summary: + 2 created -SUCCESS: Executed 3 tests in 28.281s +SUCCESS: Executed 3 tests in 32.913s ``` Notice the warning, referring to the effect of the `--update-snapshot` parameter. @@ -451,41 +371,35 @@ Notice the warning, referring to the effect of the `--update-snapshot` parameter ### Takeaway -You know how to write basic tests that evaluate success and whether outputs match reference outputs exactly. +You've now written tests for a real world process from the genomics pipeline you've been working on. You've learned that it's useful to run a test with different inputs to ensure that the process works for a range of potential issues. ### What's next? -Learn how to write tests for chained processes, and to evaluate whether outputs contain specific lines. +Learn how to write tests for other processes in our genomics workflow, using the setup method to handle chained processes. Evaluate whether outputs, specifically our VCF files, contain specific lines. --- ## 2. Add tests to a chained process and test for contents -Now that we know how to handle the simplest case, we're going to kick things up a notch with the `GATK_HAPLOTYPECALLER` process. - -As the second step in our pipeline, its input depends on the output of another process. -We can deal with this in two ways: +To test `GATK_HAPLOTYPECALLER`, we need to provide the process with the `SAMTOOLS_INDEX` output as an input. We could do that by running the `SAMTOOLS_INDEX`, retrieving its outputs, and storing with the test data for the workflow. That's actually the recommended approach for a polished pipeline, but nf-test provides an alternative approach, using the `setup` method. -- Manually generate some static test data that is suitable as intermediate input to the process; -- Use a special [setup method](https://www.nf-test.com/docs/testcases/setup/) to handle it dynamically for us. - -**Spoiler:** We're going to use the setup method. +With the setup method, we can trigger the `SAMTOOLS_INDEX` process as part of the test setup, and then use its output as an input for `GATK_HAPLOTYPECALLER`. This has a cost - we're going to have to run the `SAMTOOLS_INDEX` process every time we run the test for `GATK_HAPLOTYPECALLER`- but maybe we're still developing the workflow and don't want to pre-generate test data we might have to change later. `SAMTOOLS_INDEX` process is also very quick, so maybe the benefits of pre-generating and storing its outputs are negligible. Let's see the setup method works. ### 2.1. Generate the test file stub As previously, first we generate the file stub: ```bash -nf-test generate process modules/local/gatk/haplotypecaller/main.nf +nf-test generate process modules/gatk/haplotypecaller/main.nf ``` This produces the following test stub: -```groovy title="tests/modules/local/gatk/haplotypecaller/main.nf.test" linenums="1" +```groovy title="tests/modules/gatk/haplotypecaller/main.nf.test" linenums="1" nextflow_process { name "Test Process GATK_HAPLOTYPECALLER" - script "modules/local/gatk/haplotypecaller/main.nf" + script "modules/gatk/haplotypecaller/main.nf" process "GATK_HAPLOTYPECALLER" test("Should run without failures") { @@ -518,31 +432,31 @@ nextflow_process { We create a directory for the test file co-located with the module's `main.nf` file: ```bash -mkdir -p modules/local/gatk/haplotypecaller/tests +mkdir -p modules/gatk/haplotypecaller/tests ``` And move the test stub file there: ```bash -mv tests/modules/local/gatk/haplotypecaller/main.nf.test modules/local/gatk/haplotypecaller/tests/ +mv tests/modules/gatk/haplotypecaller/main.nf.test modules/gatk/haplotypecaller/tests/ ``` Finally, don't forget to update the script path: _Before:_ -```groovy title="modules/local/gatk/haplotypecaller/tests/main.nf.test" linenums="3" -name "Test Process GATK_HAPLOTYPECALLER" -script "modules/local/gatk/haplotypecaller/main.nf" -process "GATK_HAPLOTYPECALLER" +```groovy title="modules/gatk/haplotypecaller/tests/main.nf.test" linenums="3" + name "Test Process GATK_HAPLOTYPECALLER" + script "modules/gatk/haplotypecaller/main.nf" + process "GATK_HAPLOTYPECALLER" ``` _After:_ -```groovy title="modules/local/gatk/haplotypecaller/tests/main.nf.test" linenums="3" -name "Test Process GATK_HAPLOTYPECALLER" -script "../main.nf" -process "GATK_HAPLOTYPECALLER" +```groovy title="modules/gatk/haplotypecaller/tests/main.nf.test" linenums="3" + name "Test Process GATK_HAPLOTYPECALLER" + script "../main.nf" + process "GATK_HAPLOTYPECALLER" ``` ### 2.3. Provide inputs using the setup method @@ -551,7 +465,7 @@ We insert a `setup` block before the `when` block, where we can trigger a run of _Before:_ -```groovy title="modules/local/gatk/haplotypecaller/tests/main.nf.test" linenums="7" +```groovy title="modules/gatk/haplotypecaller/tests/main.nf.test" linenums="7" test("Should run without failures") { when { @@ -559,126 +473,118 @@ test("Should run without failures") { _After:_ -```groovy title="modules/local/gatk/haplotypecaller/tests/main.nf.test" linenums="7" -test("reads_son [bam]") { - - setup { - run("SAMTOOLS_INDEX") { - script "../../../samtools/index/main.nf" - process { - """ - input[0] = file("${projectDir}/data/bam/reads_son.bam") - """ +```groovy title="modules/gatk/haplotypecaller/tests/main.nf.test" linenums="7" + test("Should call son's halotype correctly") { + + setup { + run("SAMTOOLS_INDEX") { + script "../../../samtools/index/main.nf" + process { + """ + input[0] = file("${projectDir}/data/bam/reads_son.bam") + """ + } } } - } - when { + when { ``` Then we can refer to the output of that process in the `when` block where we specify the test inputs: ```groovy title="modules/local/gatk/haplotypecaller/tests/main.nf.test" linenums="20" - when { - params { - outdir = "tests/results" - } - process { - """ - input[0] = SAMTOOLS_INDEX.out - input[1] = file("${projectDir}/data/ref/ref.fasta") - input[2] = file("${projectDir}/data/ref/ref.fasta.fai") - input[3] = file("${projectDir}/data/ref/ref.dict") - input[4] = file("${projectDir}/data/ref/intervals.bed") - """ + when { + params { + outdir = "tests/results" + } + process { + """ + input[0] = SAMTOOLS_INDEX.out + input[1] = file("${projectDir}/data/ref/ref.fasta") + input[2] = file("${projectDir}/data/ref/ref.fasta.fai") + input[3] = file("${projectDir}/data/ref/ref.dict") + input[4] = file("${projectDir}/data/ref/intervals.bed") + """ + } } - } ``` -Using the setup method is convenient, though you should consider its use carefully. -Module-level tests are supposed to test processes in isolation in order to detect changes at the individual process level; breaking that isolation undermines that principle. - -In many cases, it's better to use intermediate test files that you generate manually as part of the preparation. -We'll show you how to do that in the next section. -But we show you the setup method too because sometimes it is useful to be able to test the connection between two modules specifically. - - - ### 2.4. Run test and examine output ```bash -nf-test test --profile docker_on modules/local/gatk/haplotypecaller/tests/main.nf.test +nf-test test modules/gatk/haplotypecaller/tests/main.nf.test ``` This produces the following output: ```console title="Output" -🚀 nf-test 0.9.1 +🚀 nf-test 0.9.2 https://www.nf-test.com (c) 2021 - 2024 Lukas Forer and Sebastian Schoenherr Test Process GATK_HAPLOTYPECALLER - Test [86fd1bce] 'reads_son [bam]' PASSED (19.082s) + Test [30247349] 'Should call son's halotype correctly' PASSED (20.002s) Snapshots: - 1 created [reads_son [bam]] + 1 created [Should call son's halotype correctly] Snapshot Summary: 1 created -SUCCESS: Executed 1 tests in 19.09s +SUCCESS: Executed 1 tests in 20.027s ``` It also produces a snapshot file like earlier. ### 2.5. Run again and observe failure -Interestingly, if you run the exact same command again, this time the test will fail with the following: +Interestingly, if you run the exact same command again, this time the test will fail. This command: ```bash -nf-test test --profile docker_on modules/local/gatk/haplotypecaller/tests/main.nf.test +nf-test test modules/gatk/haplotypecaller/tests/main.nf.test ``` -Produces: +produces: ```console title="Output" -🚀 nf-test 0.9.1 +🚀 nf-test 0.9.2 https://www.nf-test.com (c) 2021 - 2024 Lukas Forer and Sebastian Schoenherr Test Process GATK_HAPLOTYPECALLER - Test [86fd1bce] 'reads_son [bam]' FAILED (23.781s) + Test [c847bfae] 'Should call son's halotype correctly' FAILED (19.979s) java.lang.RuntimeException: Different Snapshot: - [ [ - { { - "0": [ "0": [ - [ [ - { { - "id": "reads_son" "id": "reads_son" - }, }, - "reads_son.bam.g.vcf:md5,f3583cbbe439469bfc166612e1617694", | "reads_son.bam.g.vcf:md5,428f855d616b34d44a4f0a3bcc1a0b14", - "reads_son.bam.g.vcf.idx:md5,16a78feaf6602adb2a131494e0274f9e" | "reads_son.bam.g.vcf.idx:md5,5a8d299625ef3cd3266229507a789dbb" - ] ] - ] ] - } } - ] ] + [ [ + { { + "0": [ "0": [ + "reads_son.bam.g.vcf:md5,069316cdd4328542ffc6ae247b1dac39" | "reads_son.bam.g.vcf:md5,005f1a13ee39f11b0fc9bea094850eac" + ], ], + "1": [ "1": [ + "reads_son.bam.g.vcf.idx:md5,dc36c18f2afdc546f41e68b2687e9334" | "reads_son.bam.g.vcf.idx:md5,dbad4b76a4b90c158ffc9c9740764242" + ], ], + "idx": [ "idx": [ + "reads_son.bam.g.vcf.idx:md5,dc36c18f2afdc546f41e68b2687e9334" | "reads_son.bam.g.vcf.idx:md5,dbad4b76a4b90c158ffc9c9740764242" + ], ], + "vcf": [ "vcf": [ + "reads_son.bam.g.vcf:md5,069316cdd4328542ffc6ae247b1dac39" | "reads_son.bam.g.vcf:md5,005f1a13ee39f11b0fc9bea094850eac" + ] ] + } } + ] ] Nextflow stdout: Nextflow stderr: - Nextflow 24.09.2-edge is available - Please consider updating your version to it - Obsolete snapshots can only be checked if all tests of a file are executed successful. -FAILURE: Executed 1 tests in 23.79s (1 failed) +FAILURE: Executed 1 tests in 20.032s (1 failed) ``` The error message tells you there were differences between the snapshots for the two runs; specifically, the md5sum values are different for the VCF files. @@ -708,11 +614,11 @@ then { _After:_ ```console title="modules/local/gatk/haplotypecaller/tests/main.nf.test" linenums="35" -then { - assert process.success - assert path(process.out[0][0]).readLines().contains('#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT reads_son') - assert path(process.out[0][0]).readLines().contains('20_10037292_10066351 3277 . G . . END=3282 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,719') -} + then { + assert process.success + assert path(process.out[0][0]).readLines().contains('#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT reads_son') + assert path(process.out[0][0]).readLines().contains('20_10037292_10066351 3277 . G . . END=3282 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,719') + } ``` Here we're reading in the full content of the VCF output file and searching for a content match, which is okay to do on a small test file, but you wouldn't want to do that on a larger file. @@ -726,23 +632,23 @@ On the bright side, it can be used to test with great precision whether an analy Once we've modified the test in this way, we can run the test multiple times, and it will consistently pass. ```bash -nf-test test --profile docker_on modules/local/gatk/haplotypecaller/tests/main.nf.test +nf-test test modules/gatk/haplotypecaller/tests/main.nf.test ``` Produces: ```console title="Output" -🚀 nf-test 0.9.1 +🚀 nf-test 0.9.2 https://www.nf-test.com (c) 2021 - 2024 Lukas Forer and Sebastian Schoenherr Test Process GATK_HAPLOTYPECALLER - Test [86fd1bce] 'reads_son [bam]' PASSED (19.765s) + Test [c847bfae] 'Should call son's halotype correctly' PASSED (19.33s) -SUCCESS: Executed 1 tests in 19.77s +SUCCESS: Executed 1 tests in 19.382s ``` ### 2.8. Add more test data @@ -753,103 +659,103 @@ You'll need to make sure to copy lines from the corresponding output VCFs. Test for the 'mother' sample: ```groovy title="modules/local/gatk/haplotypecaller/tests/main.nf.test" linenums="43" -test("reads_mother [bam]") { + test("reads_mother [bam]") { + + setup { + run("SAMTOOLS_INDEX") { + script "../../../samtools/index/main.nf" + process { + """ + input[0] = file("${projectDir}/data/bam/reads_mother.bam") + """ + } + } + } - setup { - run("SAMTOOLS_INDEX") { - script "../../../samtools/index/main.nf" + when { + params { + outdir = "tests/results" + } process { """ - input[0] = file("${projectDir}/data/bam/reads_mother.bam") + input[0] = SAMTOOLS_INDEX.out + input[1] = file("${projectDir}/data/ref/ref.fasta") + input[2] = file("${projectDir}/data/ref/ref.fasta.fai") + input[3] = file("${projectDir}/data/ref/ref.dict") + input[4] = file("${projectDir}/data/ref/intervals.bed") """ } } - } - when { - params { - outdir = "tests/results" - } - process { - """ - input[0] = SAMTOOLS_INDEX.out - input[1] = file("${projectDir}/data/ref/ref.fasta") - input[2] = file("${projectDir}/data/ref/ref.fasta.fai") - input[3] = file("${projectDir}/data/ref/ref.dict") - input[4] = file("${projectDir}/data/ref/intervals.bed") - """ + then { + assert process.success + assert path(process.out[0][0]).readLines().contains('#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT reads_mother') + assert path(process.out[0][0]).readLines().contains('20_10037292_10066351 3277 . G . . END=3278 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530') } } - - then { - assert process.success - assert path(process.out[0][0]).readLines().contains('#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT reads_mother') - assert path(process.out[0][0]).readLines().contains('20_10037292_10066351 3277 . G . . END=3278 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530') - } -} ``` Test for the 'father' sample: ```groovy title="modules/local/gatk/haplotypecaller/tests/main.nf.test" linenums="78" -test("reads_father [bam]") { + test("Should call father's halotype correctly") { + + setup { + run("SAMTOOLS_INDEX") { + script "../../../samtools/index/main.nf" + process { + """ + input[0] = file("${projectDir}/data/bam/reads_father.bam") + """ + } + } + } - setup { - run("SAMTOOLS_INDEX") { - script "../../../samtools/index/main.nf" + when { + params { + outdir = "tests/results" + } process { """ - input[0] = file("${projectDir}/data/bam/reads_father.bam") + input[0] = SAMTOOLS_INDEX.out + input[1] = file("${projectDir}/data/ref/ref.fasta") + input[2] = file("${projectDir}/data/ref/ref.fasta.fai") + input[3] = file("${projectDir}/data/ref/ref.dict") + input[4] = file("${projectDir}/data/ref/intervals.bed") """ } } - } - when { - params { - outdir = "tests/results" - } - process { - """ - input[0] = SAMTOOLS_INDEX.out - input[1] = file("${projectDir}/data/ref/ref.fasta") - input[2] = file("${projectDir}/data/ref/ref.fasta.fai") - input[3] = file("${projectDir}/data/ref/ref.dict") - input[4] = file("${projectDir}/data/ref/intervals.bed") - """ + then { + assert process.success + assert path(process.out[0][0]).readLines().contains('#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT reads_father') + assert path(process.out[0][0]).readLines().contains('20_10037292_10066351 3277 . G . . END=3281 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,120,1800') } } - - then { - assert process.success - assert path(process.out[0][0]).readLines().contains('#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT reads_father') - assert path(process.out[0][0]).readLines().contains('20_10037292_10066351 3277 . G . . END=3281 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,120,1800') - } -} ``` ### 2.9. Run the test command ```bash -nf-test test --profile docker_on modules/local/gatk/haplotypecaller/tests/main.nf.test +nf-test test modules/gatk/haplotypecaller/tests/main.nf.test ``` Produces: ```console title="Output" -🚀 nf-test 0.9.1 +🚀 nf-test 0.9.2 https://www.nf-test.com (c) 2021 - 2024 Lukas Forer and Sebastian Schoenherr Test Process GATK_HAPLOTYPECALLER - Test [86fd1bce] 'reads_son [bam]' PASSED (21.639s) - Test [547788fd] 'reads_mother [bam]' PASSED (18.153s) - Test [be786719] 'reads_father [bam]' PASSED (18.058s) + Test [c847bfae] 'Should call son's halotype correctly' PASSED (19.91s) + Test [44494e9c] 'Should call mother's halotype correctly' PASSED (18.606s) + Test [eb0d1a07] 'Should call father's halotype correctly' PASSED (18.773s) -SUCCESS: Executed 3 tests in 57.858s +SUCCESS: Executed 3 tests in 57.348s ``` That completes the basic test plan for this second step in the pipeline. On to the third and last module-level test! @@ -866,28 +772,53 @@ Learn how to write tests that use manually generated intermediate test data. ## 3. Use locally stored inputs -For the third step in our pipeline we'll use manually generated intermediate test data that is co-located with the module itself. +As we discussed at the start of section 2, in many cases it's better to use pre-generated test data and supply it as inputs to the test. This ensures that the test is repeatable and doesn't require the user to have access to the same data as the developer. It also prevents the need to re-run the upstream processes to generate the test data. + +For the third step in our pipeline we'll use manually generated intermediate test data that is co-located with the module itself, based on results we generated using our test runs. -We've included a copy of the intermediate files produced by the first part of the pipeline under the `jointgenotyping` module: +Let's inspect the results we have: -```console title="Directory contents" -modules/local/gatk/jointgenotyping/tests/inputs/ -├── reads_father.bam.g.vcf -├── reads_father.bam.g.vcf.idx -├── reads_mother.bam.g.vcf -├── reads_mother.bam.g.vcf.idx -├── reads_son.bam.g.vcf -└── reads_son.bam.g.vcf.idx +```bash +tree results_genomics/ +``` + +```console title="Results directory contents" +results_genomics/ +├── family_trio.joint.vcf +├── family_trio.joint.vcf.idx +├── reads_father.bam -> /workspaces/training/nf4-science/genomics/work/42/a3bf19dbfaf1f3672b16a5d5e6a8be/reads_father.bam +├── reads_father.bam.bai -> /workspaces/training/nf4-science/genomics/work/cf/289c2d264f496d60a69e3e9ba6463e/reads_father.bam.bai +├── reads_father.bam.g.vcf -> /workspaces/training/nf4-science/genomics/work/30/b2522b83c63baff8c3cf75704512a2/reads_father.bam.g.vcf +├── reads_father.bam.g.vcf.idx -> /workspaces/training/nf4-science/genomics/work/30/b2522b83c63baff8c3cf75704512a2/reads_father.bam.g.vcf.idx +├── reads_mother.bam -> /workspaces/training/nf4-science/genomics/work/af/f31a6ade82cc0cf853c4f61c8bc473/reads_mother.bam +├── reads_mother.bam.bai -> /workspaces/training/nf4-science/genomics/work/18/89dfa40a3def17e45421e54431a126/reads_mother.bam.bai +├── reads_mother.bam.g.vcf -> /workspaces/training/nf4-science/genomics/work/f6/be2efa58e625d08cf8d0da1d0e9f09/reads_mother.bam.g.vcf +├── reads_mother.bam.g.vcf.idx -> /workspaces/training/nf4-science/genomics/work/f6/be2efa58e625d08cf8d0da1d0e9f09/reads_mother.bam.g.vcf.idx +├── reads_son.bam -> /workspaces/training/nf4-science/genomics/work/9f/9615dd553d6f13d8bec4f006ac395f/reads_son.bam +├── reads_son.bam.bai -> /workspaces/training/nf4-science/genomics/work/4d/cb384a97db5687cc9daab002017c7c/reads_son.bam.bai +├── reads_son.bam.g.vcf -> /workspaces/training/nf4-science/genomics/work/fe/2f22d56aa16ed45f8bc419312894f6/reads_son.bam.g.vcf +└── reads_son.bam.g.vcf.idx -> /workspaces/training/nf4-science/genomics/work/fe/2f22d56aa16ed45f8bc419312894f6/reads_son.bam.g.vcf.idx + +0 directories, 14 files ``` -The idea here is to use these files as inputs to the test we're going to write for the joint genotyping step. +Note that some of these files are symlinks to the actual files in the `work` directory. + +The joint genotyping step needs the VCF files produced by the haplotype caller steps as inputs, along with the indices. So let's copy the results we have into the `jointgenotyping` module's test directory. We'll follow symlinks to the original files. + +```bash +mkdir -p modules/gatk/jointgenotyping/tests/inputs/ +cp -rL results_genomics/*.g.vcf results_genomics/*.g.vcf.idx modules/gatk/jointgenotyping/tests/inputs/ +``` + +Now we can use these files as inputs to the test we're going to write for the joint genotyping step. ### 3.1. Generate the test file stub As previously, first we generate the file stub: ```bash -nf-test generate process modules/local/gatk/jointgenotyping/main.nf +nf-test generate process modules/gatk/jointgenotyping/main.nf ``` This produces the following test stub: @@ -896,7 +827,7 @@ This produces the following test stub: nextflow_process { name "Test Process GATK_JOINTGENOTYPING" - script "modules/local/gatk/jointgenotyping/main.nf" + script "modules/gatk/jointgenotyping/main.nf" process "GATK_JOINTGENOTYPING" test("Should run without failures") { @@ -929,7 +860,7 @@ nextflow_process { This time we already have a directory for tests co-located with the module's `main.nf` file, so we can move the test stub file there: ```bash -mv tests/modules/local/gatk/jointgenotyping/main.nf.test modules/local/gatk/jointgenotyping/tests/ +mv tests/modules/gatk/jointgenotyping/main.nf.test modules/gatk/jointgenotyping/tests/ ``` And don't forget to update the script path: @@ -955,66 +886,66 @@ process "GATK_JOINTGENOTYPING" Fill in the inputs based on the process input definitions and rename the test accordingly: ```groovy title="modules/local/gatk/jointgenotyping/tests/main.nf.test" linenums="7" -test("family_trio [vcf] [idx]") { + test("Should call trio's joint genotype correctly") { - when { - params { - outdir = "tests/results" - } - process { - """ - input[0] = [ - file("${projectDir}/modules/local/gatk/jointgenotyping/tests/inputs/reads_father.bam.g.vcf"), - file("${projectDir}/modules/local/gatk/jointgenotyping/tests/inputs/reads_mother.bam.g.vcf"), - file("${projectDir}/modules/local/gatk/jointgenotyping/tests/inputs/reads_son.bam.g.vcf") - ] - input[1] = [ - file("${projectDir}/modules/local/gatk/jointgenotyping/tests/inputs/reads_father.bam.g.vcf.idx"), - file("${projectDir}/modules/local/gatk/jointgenotyping/tests/inputs/reads_mother.bam.g.vcf.idx"), - file("${projectDir}/modules/local/gatk/jointgenotyping/tests/inputs/reads_son.bam.g.vcf.idx") - ] - input[2] = file("${projectDir}/data/ref/intervals.bed") - input[3] = "family_trio" - input[4] = file("${projectDir}/data/ref/ref.fasta") - input[5] = file("${projectDir}/data/ref/ref.fasta.fai") - input[6] = file("${projectDir}/data/ref/ref.dict") - """ + when { + params { + outdir = "tests/results" + } + process { + """ + input[0] = [ + file("${projectDir}/modules/gatk/jointgenotyping/tests/inputs/reads_father.bam.g.vcf"), + file("${projectDir}/modules/gatk/jointgenotyping/tests/inputs/reads_mother.bam.g.vcf"), + file("${projectDir}/modules/gatk/jointgenotyping/tests/inputs/reads_son.bam.g.vcf") + ] + input[1] = [ + file("${projectDir}/modules/gatk/jointgenotyping/tests/inputs/reads_father.bam.g.vcf.idx"), + file("${projectDir}/modules/gatk/jointgenotyping/tests/inputs/reads_mother.bam.g.vcf.idx"), + file("${projectDir}/modules/gatk/jointgenotyping/tests/inputs/reads_son.bam.g.vcf.idx") + ] + input[2] = file("${projectDir}/data/ref/intervals.bed") + input[3] = "family_trio" + input[4] = file("${projectDir}/data/ref/ref.fasta") + input[5] = file("${projectDir}/data/ref/ref.fasta.fai") + input[6] = file("${projectDir}/data/ref/ref.dict") + """ + } } - } ``` ### 3.4. Use content assertions The output of the joint genotyping step is another VCF file, so we're going to use a content assertion again. -```groovy title="modules/local/gatk/jointgenotyping/tests/main.nf.test" linenums="25" -then { - assert process.success - assert path(process.out[0][0]).readLines().contains('#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT reads_father reads_mother reads_son') - assert path(process.out[0][0]).readLines().contains('20_10037292_10066351 3480 . C CT 1625.89 . AC=5;AF=0.833;AN=6;BaseQRankSum=0.220;DP=85;ExcessHet=0.0000;FS=2.476;MLEAC=5;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=21.68;ReadPosRankSum=-1.147e+00;SOR=0.487 GT:AD:DP:GQ:PL 0/1:15,16:31:99:367,0,375 1/1:0,18:18:54:517,54,0 1/1:0,26:26:78:756,78,0') -} +```groovy title="modules/gatk/jointgenotyping/tests/main.nf.test" linenums="25" + then { + assert process.success + assert path(process.out[0][0]).readLines().contains('#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT reads_father reads_mother reads_son') + assert path(process.out[0][0]).readLines().contains('20_10037292_10066351 3480 . C CT 1625.89 . AC=5;AF=0.833;AN=6;BaseQRankSum=0.220;DP=85;ExcessHet=0.0000;FS=2.476;MLEAC=5;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=21.68;ReadPosRankSum=-1.147e+00;SOR=0.487 GT:AD:DP:GQ:PL 0/1:15,16:31:99:367,0,375 1/1:0,18:18:54:517,54,0 1/1:0,26:26:78:756,78,0') + } ``` ### 3.5. Run the test ```bash -nf-test test --profile docker_on modules/local/gatk/jointgenotyping/tests/main.nf.test +nf-test test modules/gatk/jointgenotyping/tests/main.nf.test ``` Produces: ```console title="Output" -🚀 nf-test 0.9.1 +🚀 nf-test 0.9.2 https://www.nf-test.com (c) 2021 - 2024 Lukas Forer and Sebastian Schoenherr Test Process GATK_JOINTGENOTYPING - Test [24c3cb4b] 'family_trio [vcf] [idx]' PASSED (14.881s) + Test [ac2067de] 'Should call trio's joint genotype correctly' PASSED (21.604s) -SUCCESS: Executed 1 tests in 14.885s +SUCCESS: Executed 1 tests in 21.622s ``` It works! And that's it for module-level tests for our pipeline. @@ -1038,16 +969,16 @@ Now all that remains is to add a test for checking that the whole pipeline runs The command is similar to the one for module tests, except it says `generate pipeline` instead of `generate process`: ```bash -nf-test generate pipeline main.nf +nf-test generate pipeline genomics-4.nf ``` It produces a similar stub file: -```groovy title="tests/main.nf.test" linenums="1" +```groovy title="tests/genomics-4.nf.test" linenums="1" nextflow_pipeline { - name "Test Workflow main.nf" - script "main.nf" + name "Test Workflow genomics-4.nf" + script "genomics-4.nf" test("Should run without failures") { @@ -1065,6 +996,7 @@ nextflow_pipeline { } } + ``` The line `assert workflow.success` is a simple assertion testing for whether the pipeline ran successfully. @@ -1109,23 +1041,23 @@ When we run the test, `nf-test` will pick up this configuration file and pull in Here we go! ```bash -nf-test test --profile docker_on tests/main.nf.test +nf-test test tests/genomics-4.nf.test ``` This produces: ```console title="Output" -🚀 nf-test 0.9.1 +🚀 nf-test 0.9.2 https://www.nf-test.com (c) 2021 - 2024 Lukas Forer and Sebastian Schoenherr -Test Workflow hello-nf-test.nf +Test Workflow genomics-4.nf - Test [df3a3a8c] 'Should run without failures' PASSED (62.493s) + Test [c7dbcaca] 'Should run without failures' PASSED (48.443s) -SUCCESS: Executed 1 tests in 62.498s +SUCCESS: Executed 1 tests in 48.486s ``` That's it! If necessary, more nuanced assertions can be added to test for the validity and content of the pipeline outputs. @@ -1150,7 +1082,7 @@ config { _After:_ -```groovy title="tests/nf-test.config" linenums="1" +```groovy title="nf-test.config" linenums="1" config { testsDir "." @@ -1164,11 +1096,10 @@ config { Now, we can simply run nf-test and it will run _every single test_ in our repository: ```bash -nf-test test --profile docker_on +nf-test test ``` ```console title="Output" -gitpod /workspaces/hello-nextflow/hello-nf-test (master) $ nf-test test --profile docker_on 🚀 nf-test 0.9.2 https://www.nf-test.com @@ -1177,26 +1108,26 @@ https://www.nf-test.com Test Process GATK_HAPLOTYPECALLER - Test [91903020] 'reads_son [bam]' PASSED (9.392s) - Test [6dd10adf] 'reads_mother [bam]' PASSED (9.508s) - Test [2d01c506] 'reads_father [bam]' PASSED (9.209s) + Test [c847bfae] 'Should call son's halotype correctly' PASSED (20.951s) + Test [44494e9c] 'Should call mother's halotype correctly' PASSED (19.155s) + Test [eb0d1a07] 'Should call father's halotype correctly' PASSED (21.843s) Test Process GATK_JOINTGENOTYPING - Test [fd98ae7b] 'family_trio [vcf] [idx]' PASSED (10.537s) + Test [ac2067de] 'Should call trio's joint genotype correctly' PASSED (22.994s) Test Process SAMTOOLS_INDEX - Test [e8dbf1c1] 'reads_son [bam]' PASSED (4.504s) - Test [5e05ca64] 'reads_mother [bam]' PASSED (4.37s) - Test [254f67ac] 'reads_father [bam]' PASSED (4.717s) + Test [625e39ee] 'Should index reads_son.bam correctly' PASSED (11.281s) + Test [a8b28f36] 'Should index reads_mother.bam correctly' PASSED (11.126s) + Test [c15852a1] 'Should index reads_father.bam correctly' PASSED (12.005s) -Test Workflow main.nf +Test Workflow genomics-4.nf - Test [6fa6c90c] 'Should run without failures' PASSED (23.872s) + Test [c7dbcaca] 'Should run without failures' PASSED (47.92s) -SUCCESS: Executed 8 tests in 76.154s +SUCCESS: Executed 8 tests in 167.772s ``` 7 tests in 1 command! We spent a long time configuring lots and lots of tests, but when it came to running them it was very quick and easy. You can see how useful this is when maintaining a large pipeline, which could include hundreds of different elements. We spend time writing tests once so we can save time running them many times. @@ -1205,8 +1136,18 @@ Furthermore, we can automate this! imagine tests running every time you or a col ### Takeaway -You know how to write and run several kinds of tests for individual modules and for the entire workflow. +## Expanded Takeaway -### What's next? +You now know how to write and run several kinds of tests for your genomics pipeline using nf-test. This testing framework helps ensure your variant calling workflow produces consistent, reliable results across different environments and as you make code changes. + +You've learned to test critical components like: +- The `SAMTOOLS_INDEX` process that prepares BAM files for variant calling +- The `GATK_HAPLOTYPECALLER` process that identifies variants in individual samples +- The `GATK_JOINTGENOTYPING` process that combines variant calls across a cohort + +You've also implemented different testing strategies specific to genomics data: +- Verifying that VCF files contain expected variant calls despite non-deterministic elements like timestamps +- Testing with a family trio dataset to ensure proper variant identification across related samples +- Checking for specific genomic coordinates and variant information in your output files -Celebrate and take a big break! Next up, we delve into the cornucopia of code and tools that is the nf-core project. +These testing skills are essential for developing robust bioinformatics pipelines that can reliably process genomic data and produce accurate variant calls. As you continue working with Nextflow for genomics analysis, this testing foundation will help you maintain high-quality code that produces trustworthy scientific results. From d9a0a11f396d764d884535903939285b7ea69a3a Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Tue, 4 Mar 2025 12:31:22 +0000 Subject: [PATCH 02/17] Add modularised code as genomics solution --- .../modules/gatk/haplotypecaller/main.nf | 30 ++++++++++++++++ .../modules/gatk/jointgenotyping/main.nf | 36 +++++++++++++++++++ .../modules/modules/samtools/index/main.nf | 20 +++++++++++ 3 files changed, 86 insertions(+) create mode 100644 nf4-science/genomics/solutions/modules/modules/gatk/haplotypecaller/main.nf create mode 100644 nf4-science/genomics/solutions/modules/modules/gatk/jointgenotyping/main.nf create mode 100644 nf4-science/genomics/solutions/modules/modules/samtools/index/main.nf diff --git a/nf4-science/genomics/solutions/modules/modules/gatk/haplotypecaller/main.nf b/nf4-science/genomics/solutions/modules/modules/gatk/haplotypecaller/main.nf new file mode 100644 index 000000000..406935c31 --- /dev/null +++ b/nf4-science/genomics/solutions/modules/modules/gatk/haplotypecaller/main.nf @@ -0,0 +1,30 @@ +/* + * Call variants with GATK HaplotypeCaller + */ +process GATK_HAPLOTYPECALLER { + + container "community.wave.seqera.io/library/gatk4:4.5.0.0--730ee8817e436867" + + publishDir params.outdir, mode: 'symlink' + + input: + tuple path(input_bam), path(input_bam_index) + path ref_fasta + path ref_index + path ref_dict + path interval_list + + output: + path "${input_bam}.g.vcf" , emit: vcf + path "${input_bam}.g.vcf.idx" , emit: idx + + script: + """ + gatk HaplotypeCaller \ + -R ${ref_fasta} \ + -I ${input_bam} \ + -O ${input_bam}.g.vcf \ + -L ${interval_list} \ + -ERC GVCF + """ +} diff --git a/nf4-science/genomics/solutions/modules/modules/gatk/jointgenotyping/main.nf b/nf4-science/genomics/solutions/modules/modules/gatk/jointgenotyping/main.nf new file mode 100644 index 000000000..b22188634 --- /dev/null +++ b/nf4-science/genomics/solutions/modules/modules/gatk/jointgenotyping/main.nf @@ -0,0 +1,36 @@ +/* + * Combine GVCFs into GenomicsDB datastore and run joint genotyping to produce cohort-level calls + */ +process GATK_JOINTGENOTYPING { + + container "community.wave.seqera.io/library/gatk4:4.5.0.0--730ee8817e436867" + publishDir params.outdir, mode: 'copy' + + input: + path all_gvcfs + path all_idxs + path interval_list + val cohort_name + path ref_fasta + path ref_index + path ref_dict + + output: + path "${cohort_name}.joint.vcf" , emit: vcf + path "${cohort_name}.joint.vcf.idx" , emit: idx + + script: + def gvcfs_line = all_gvcfs.collect { gvcf -> "-V ${gvcf}" }.join(' ') + """ + gatk GenomicsDBImport \ + ${gvcfs_line} \ + -L ${interval_list} \ + --genomicsdb-workspace-path ${cohort_name}_gdb + + gatk GenotypeGVCFs \ + -R ${ref_fasta} \ + -V gendb://${cohort_name}_gdb \ + -L ${interval_list} \ + -O ${cohort_name}.joint.vcf + """ +} diff --git a/nf4-science/genomics/solutions/modules/modules/samtools/index/main.nf b/nf4-science/genomics/solutions/modules/modules/samtools/index/main.nf new file mode 100644 index 000000000..796376005 --- /dev/null +++ b/nf4-science/genomics/solutions/modules/modules/samtools/index/main.nf @@ -0,0 +1,20 @@ +/* + * Generate BAM index file + */ +process SAMTOOLS_INDEX { + + container 'community.wave.seqera.io/library/samtools:1.20--b5dfbd93de237464' + + publishDir params.outdir, mode: 'symlink' + + input: + path input_bam + + output: + tuple path(input_bam), path("${input_bam}.bai") + + script: + """ + samtools index '$input_bam' + """ +} From 2fe9f76b28e5c8d1db973d8c797e9105e3cce671 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Tue, 4 Mar 2025 12:33:53 +0000 Subject: [PATCH 03/17] Add testing solutions --- nf4-science/genomics/solutions/nf-test.config | 8 ++++++ .../solutions/tests/genomics-4.nf.test | 21 +++++++++++++++ .../genomics/solutions/tests/nextflow.config | 26 +++++++++++++++++++ 3 files changed, 55 insertions(+) create mode 100644 nf4-science/genomics/solutions/nf-test.config create mode 100644 nf4-science/genomics/solutions/tests/genomics-4.nf.test create mode 100644 nf4-science/genomics/solutions/tests/nextflow.config diff --git a/nf4-science/genomics/solutions/nf-test.config b/nf4-science/genomics/solutions/nf-test.config new file mode 100644 index 000000000..feb82f052 --- /dev/null +++ b/nf4-science/genomics/solutions/nf-test.config @@ -0,0 +1,8 @@ +config { + + testsDir "." + workDir ".nf-test" + configFile "tests/nextflow.config" + profile "" + +} diff --git a/nf4-science/genomics/solutions/tests/genomics-4.nf.test b/nf4-science/genomics/solutions/tests/genomics-4.nf.test new file mode 100644 index 000000000..c81b135c8 --- /dev/null +++ b/nf4-science/genomics/solutions/tests/genomics-4.nf.test @@ -0,0 +1,21 @@ +nextflow_pipeline { + + name "Test Workflow genomics-4.nf" + script "genomics-4.nf" + + test("Should run without failures") { + + when { + params { + // define parameters here. Example: + // outdir = "tests/results" + } + } + + then { + assert workflow.success + } + + } + +} diff --git a/nf4-science/genomics/solutions/tests/nextflow.config b/nf4-science/genomics/solutions/tests/nextflow.config new file mode 100644 index 000000000..5d110a318 --- /dev/null +++ b/nf4-science/genomics/solutions/tests/nextflow.config @@ -0,0 +1,26 @@ +/* +======================================================================================== + Nextflow config file for running tests +======================================================================================== +*/ + +/* + * Pipeline parameters + */ + +params { + // Primary input (file of input files, one per line) + reads_bam = "${projectDir}/data/sample_bams.txt" + + // Output directory + params.outdir = "results_genomics" + + // Accessory files + reference = "${projectDir}/data/ref/ref.fasta" + reference_index = "${projectDir}/data/ref/ref.fasta.fai" + reference_dict = "${projectDir}/data/ref/ref.dict" + intervals = "${projectDir}/data/ref/intervals.bed" + + // Base name for final output file + cohort_name = "family_trio" +} From 9d0c0d24b32192fbc0b95be0e8869b3b2dbc52ec Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Tue, 4 Mar 2025 12:39:35 +0000 Subject: [PATCH 04/17] Prettier --- docs/nf4_science/genomics/04_testing.md | 41 ++++++++++++------------- 1 file changed, 20 insertions(+), 21 deletions(-) diff --git a/docs/nf4_science/genomics/04_testing.md b/docs/nf4_science/genomics/04_testing.md index e9e0dea41..1e2ecfc1c 100644 --- a/docs/nf4_science/genomics/04_testing.md +++ b/docs/nf4_science/genomics/04_testing.md @@ -8,7 +8,6 @@ In the third part, we modularized the pipeline. In this part of the training, we're going to show you how to use [**nf-test**](https://www.nf-test.com/), a testing framework that integrates well with Nextflow and makes it straightforward to add both module-level and workflow-level tests to your pipeline. To follow this part of the training, you should have completed Part 1, Part 2, and Part 3, as well as the [nf-test side quest](../../side_quests/nf-test.md), which covers the basics of nf-test, and why testing is important. - --- ## 0. Warmup @@ -34,7 +33,6 @@ modules/ This modules directory can be found in the `solutions` directory if you need it. - We're going to start with the same workflow as in Part 3, which we've provided for you in the file `genomics-4.nf`. Exactly as for the [nf-test side quest](../../side_quests/nf-test.md), we're going to add a few different types of tests to the three processes in this pipeline, as well as a workflow-level test. ### 0.1. Check the workflow runs @@ -192,7 +190,6 @@ The stub file includes a placeholder that we need to replace with an actual test _Before:_ - ```groovy title="modules/samtools/index/tests/main.nf.test" linenums="14" process { """ @@ -201,6 +198,7 @@ process { """ } ``` + _After:_ ```groovy title="modules/samtools/index/tests/main.nf.test" linenums="14" @@ -292,23 +290,23 @@ As we learned previously, this verified the basic assertion about the success of ```json title="tests/modules/samtools/index/tests/main.nf.test.snap" linenums="1" { - "Should index reads_son.bam correctly": { - "content": [ - { - "0": [ - [ - "reads_son.bam:md5,af5956d9388ba017944bef276b71d809", - "reads_son.bam.bai:md5,a2ca7b84998218ee77eff14af8eb8ca2" - ] - ] - } - ], - "meta": { - "nf-test": "0.9.2", - "nextflow": "24.10.0" - }, - "timestamp": "2025-03-03T16:59:54.195992321" - } + "Should index reads_son.bam correctly": { + "content": [ + { + "0": [ + [ + "reads_son.bam:md5,af5956d9388ba017944bef276b71d809", + "reads_son.bam.bai:md5,a2ca7b84998218ee77eff14af8eb8ca2" + ] + ] + } + ], + "meta": { + "nf-test": "0.9.2", + "nextflow": "24.10.0" + }, + "timestamp": "2025-03-03T16:59:54.195992321" + } } ``` @@ -332,7 +330,6 @@ Test Process SAMTOOLS_INDEX SUCCESS: Executed 1 tests in 11.947s ``` - ### 1.7. Add more tests to `SAMTOOLS_INDEX` Sometimes it's useful to test a range of different input files to ensure we're testing for a variety of potential issues. Let's also test for the mother and father's bam files in the trio from our test data. Add the following tests to the test file: @@ -1141,11 +1138,13 @@ Furthermore, we can automate this! imagine tests running every time you or a col You now know how to write and run several kinds of tests for your genomics pipeline using nf-test. This testing framework helps ensure your variant calling workflow produces consistent, reliable results across different environments and as you make code changes. You've learned to test critical components like: + - The `SAMTOOLS_INDEX` process that prepares BAM files for variant calling - The `GATK_HAPLOTYPECALLER` process that identifies variants in individual samples - The `GATK_JOINTGENOTYPING` process that combines variant calls across a cohort You've also implemented different testing strategies specific to genomics data: + - Verifying that VCF files contain expected variant calls despite non-deterministic elements like timestamps - Testing with a family trio dataset to ensure proper variant identification across related samples - Checking for specific genomic coordinates and variant information in your output files From 681d16a95ed5c2ec4a4995b3c7891b9e4c4d0424 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Tue, 4 Mar 2025 17:12:31 +0000 Subject: [PATCH 05/17] eclint fix --- nf4-science/genomics/solutions/tests/genomics-4.nf.test | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/nf4-science/genomics/solutions/tests/genomics-4.nf.test b/nf4-science/genomics/solutions/tests/genomics-4.nf.test index c81b135c8..4a3ee3fe3 100644 --- a/nf4-science/genomics/solutions/tests/genomics-4.nf.test +++ b/nf4-science/genomics/solutions/tests/genomics-4.nf.test @@ -7,7 +7,7 @@ nextflow_pipeline { when { params { - // define parameters here. Example: + // define parameters here. Example: // outdir = "tests/results" } } From c29c4bf232bcb369d0fdd0d14072a15d5e37af8c Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Tue, 4 Mar 2025 17:27:59 +0000 Subject: [PATCH 06/17] Update mkdocs config --- mkdocs.yml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/mkdocs.yml b/mkdocs.yml index b7ca4c97c..802ea2809 100644 --- a/mkdocs.yml +++ b/mkdocs.yml @@ -28,6 +28,7 @@ nav: - nf4_science/genomics/01_per_sample_variant_calling.md - nf4_science/genomics/02_joint_calling.md - nf4_science/genomics/03_modules.md + - nf4_science/genomics/04_testing.md - Nextflow for RNAseq: - nf4_science/rnaseq/index.md @@ -189,6 +190,7 @@ plugins: - advanced/orientation.md - side_quests/nf-test.md - nf4_science/genomics/03_modules.md + - nf4_science/genomics/04_testing.md - i18n: docs_structure: suffix From 9137276333f7e43a30a97224b8a33526aac5b26a Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Tue, 4 Mar 2025 17:35:24 +0000 Subject: [PATCH 07/17] Fix title --- docs/nf4_science/genomics/04_testing.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/nf4_science/genomics/04_testing.md b/docs/nf4_science/genomics/04_testing.md index 1e2ecfc1c..0489b44f1 100644 --- a/docs/nf4_science/genomics/04_testing.md +++ b/docs/nf4_science/genomics/04_testing.md @@ -1,4 +1,4 @@ -# Part 3: adding tests +# Part 4: Adding tests In the first part of this course, you built a variant calling pipeline that was completely linear and processed each sample's data independently of the others. From ec34f68e3bc97d1e29e4039c4cb2703ae5dcb37a Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Tue, 4 Mar 2025 17:37:29 +0000 Subject: [PATCH 08/17] Fix miss-namings --- docs/nf4_science/genomics/04_testing.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/docs/nf4_science/genomics/04_testing.md b/docs/nf4_science/genomics/04_testing.md index 0489b44f1..7477fe766 100644 --- a/docs/nf4_science/genomics/04_testing.md +++ b/docs/nf4_science/genomics/04_testing.md @@ -42,7 +42,7 @@ Before we start adding tests, let's make sure the workflow runs as expected. Let's try running that now. ```bash -nextflow run genomics-3.nf -resume +nextflow run genomics-4.nf -resume ``` This should look very familiar by now if you've been working through this training course from the start. @@ -50,7 +50,7 @@ This should look very familiar by now if you've been working through this traini ```console title="Output" N E X T F L O W ~ version 24.10.0 -Launching `genomics-3.nf` [gloomy_poincare] DSL2 - revision: 43203316e0 +Launching `genomics-4.nf` [gloomy_poincare] DSL2 - revision: 43203316e0 executor > local (7) [18/89dfa4] SAMTOOLS_INDEX (1) | 3 of 3 ✔ @@ -71,7 +71,7 @@ nf-test init This should produce the following output: ```bash -🚀 nf-test 0.9.1 +🚀 nf-test 0.9.2 https://www.nf-test.com (c) 2021 - 2024 Lukas Forer and Sebastian Schoenherr From 09ea469f9f82dc5ed5af256f7531d7ae67fa1892 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Tue, 4 Mar 2025 17:38:55 +0000 Subject: [PATCH 09/17] Remove lingering locals --- docs/nf4_science/genomics/04_testing.md | 32 ++++++++++++------------- 1 file changed, 16 insertions(+), 16 deletions(-) diff --git a/docs/nf4_science/genomics/04_testing.md b/docs/nf4_science/genomics/04_testing.md index 7477fe766..a7fbc8313 100644 --- a/docs/nf4_science/genomics/04_testing.md +++ b/docs/nf4_science/genomics/04_testing.md @@ -115,7 +115,7 @@ SUCCESS: Generated 1 test files. You can navigate to the directory in the file explorer and open the file, which should contain the following code: -```groovy title="tests/modules/local/samtools/index/main.nf.test" linenums="1" +```groovy title="tests/modules/samtools/index/main.nf.test" linenums="1" nextflow_process { name "Test Process SAMTOOLS_INDEX" @@ -168,7 +168,7 @@ Now we can simplify the `script` section of the test file to a relative path: _Before:_ -```groovy title="modules/local/samtools/index/tests/main.nf.test" linenums="3" +```groovy title="modules/samtools/index/tests/main.nf.test" linenums="3" name "Test Process SAMTOOLS_INDEX" script "modules/samtools/index/main.nf" process "SAMTOOLS_INDEX" @@ -176,7 +176,7 @@ process "SAMTOOLS_INDEX" _After:_ -```groovy title="modules/local/samtools/index/tests/main.nf.test" linenums="3" +```groovy title="modules/samtools/index/tests/main.nf.test" linenums="3" name "Test Process SAMTOOLS_INDEX" script "../main.nf" process "SAMTOOLS_INDEX" @@ -215,7 +215,7 @@ As we learned before, it's good practice to rename the test to something that ma _Before:_ -```groovy title="modules/local/samtools/index/tests/main.nf.test" linenums="7" +```groovy title="modules/samtools/index/tests/main.nf.test" linenums="7" test("Should run without failures") { ``` @@ -234,7 +234,7 @@ The `params` block in the stub file includes a placeholder for parameters: _Before:_ -```groovy title="modules/local/samtools/index/tests/main.nf.test" linenums="11" +```groovy title="modules/samtools/index/tests/main.nf.test" linenums="11" params { // define parameters here. Example: // outdir = "tests/results" @@ -245,7 +245,7 @@ We use it to specify a location for the results to be output, using the default _After:_ -```groovy title="modules/local/samtools/index/tests/main.nf.test" linenums="11" +```groovy title="modules/samtools/index/tests/main.nf.test" linenums="11" params { outdir = "tests/results" } @@ -489,7 +489,7 @@ _After:_ Then we can refer to the output of that process in the `when` block where we specify the test inputs: -```groovy title="modules/local/gatk/haplotypecaller/tests/main.nf.test" linenums="20" +```groovy title="modules/gatk/haplotypecaller/tests/main.nf.test" linenums="20" when { params { outdir = "tests/results" @@ -601,7 +601,7 @@ In practice, we replace the second assertion in the `then` block as follows: _Before:_ -```groovy title="modules/local/gatk/haplotypecaller/tests/main.nf.test" linenums="35" +```groovy title="modules/gatk/haplotypecaller/tests/main.nf.test" linenums="35" then { assert process.success assert snapshot(process.out).match() @@ -610,7 +610,7 @@ then { _After:_ -```console title="modules/local/gatk/haplotypecaller/tests/main.nf.test" linenums="35" +```console title="modules/gatk/haplotypecaller/tests/main.nf.test" linenums="35" then { assert process.success assert path(process.out[0][0]).readLines().contains('#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT reads_son') @@ -655,7 +655,7 @@ You'll need to make sure to copy lines from the corresponding output VCFs. Test for the 'mother' sample: -```groovy title="modules/local/gatk/haplotypecaller/tests/main.nf.test" linenums="43" +```groovy title="modules/gatk/haplotypecaller/tests/main.nf.test" linenums="43" test("reads_mother [bam]") { setup { @@ -694,7 +694,7 @@ Test for the 'mother' sample: Test for the 'father' sample: -```groovy title="modules/local/gatk/haplotypecaller/tests/main.nf.test" linenums="78" +```groovy title="modules/gatk/haplotypecaller/tests/main.nf.test" linenums="78" test("Should call father's halotype correctly") { setup { @@ -820,7 +820,7 @@ nf-test generate process modules/gatk/jointgenotyping/main.nf This produces the following test stub: -```groovy title="tests/modules/local/gatk/jointgenotyping/main.nf.test" linenums="1" +```groovy title="tests/modules/gatk/jointgenotyping/main.nf.test" linenums="1" nextflow_process { name "Test Process GATK_JOINTGENOTYPING" @@ -864,15 +864,15 @@ And don't forget to update the script path: _Before:_ -```groovy title="modules/local/gatk/jointgenotyping/tests/main.nf.test" linenums="3" +```groovy title="modules/gatk/jointgenotyping/tests/main.nf.test" linenums="3" name "Test Process GATK_JOINTGENOTYPING" -script "modules/local/gatk/jointgenotyping/main.nf" +script "modules/gatk/jointgenotyping/main.nf" process "GATK_JOINTGENOTYPING" ``` _After:_ -```groovy title="modules/local/gatk/jointgenotyping/tests/main.nf.test" linenums="3" +```groovy title="modules/gatk/jointgenotyping/tests/main.nf.test" linenums="3" name "Test Process GATK_JOINTGENOTYPING" script "../main.nf" process "GATK_JOINTGENOTYPING" @@ -882,7 +882,7 @@ process "GATK_JOINTGENOTYPING" Fill in the inputs based on the process input definitions and rename the test accordingly: -```groovy title="modules/local/gatk/jointgenotyping/tests/main.nf.test" linenums="7" +```groovy title="modules/gatk/jointgenotyping/tests/main.nf.test" linenums="7" test("Should call trio's joint genotype correctly") { when { From f0ec51d3f194e95e3505fd74a0608a5663699f64 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Tue, 4 Mar 2025 18:35:57 +0000 Subject: [PATCH 10/17] tweaks --- docs/nf4_science/genomics/04_testing.md | 121 ++++++++++++++---------- 1 file changed, 71 insertions(+), 50 deletions(-) diff --git a/docs/nf4_science/genomics/04_testing.md b/docs/nf4_science/genomics/04_testing.md index a7fbc8313..2bbeae53f 100644 --- a/docs/nf4_science/genomics/04_testing.md +++ b/docs/nf4_science/genomics/04_testing.md @@ -92,13 +92,15 @@ Write basic tests that evaluate whether the process calls were successful and pr ## 1. Test a process for success and matching outputs -We're going to start by adding a test for the `SAMTOOLS_INDEX` process. -It's a very simple process that takes a single input file (for which we have test data on hand) and generates an index file. -We want to test that the process runs successfully and that the file it produces is always the same for a given input. +We'll start by testing the `SAMTOOLS_INDEX` process, which creates index files for BAM files to enable efficient random access. This is a good first test case because: + +1. It has a single, well-defined input (a BAM file) +2. It produces a predictable output (a BAI index file) +3. The output should be identical for identical inputs ### 1.1. Generate a test file stub -First, we use the `nf-test generate process` command to create a test file stub. +First, generate a test file stub: ```bash nf-test generate process modules/samtools/index/main.nf @@ -209,7 +211,7 @@ process { } ``` -### 1.4. Rename the test based on the primary test input +### 1.4. Name the test based on functionality As we learned before, it's good practice to rename the test to something that makes sense in the context of the test. @@ -253,19 +255,13 @@ params { ### 1.6. Run the test and examine the output -Finally, it's time to run our test! Let's break down the syntax. - -- The basic command is `nf-test test`. -- To that, we add `--profile docker_on` to specify that we want Nextflow to run the test with Docker enabled. -- Then the test file that we want to run. - -All put together, it looks like this: +Run the test: ```bash nf-test test modules/samtools/index/tests/main.nf.test ``` -This should produce the following output: +This should produce: ```console title="Output" 🚀 nf-test 0.9.2 @@ -316,6 +312,8 @@ We can also run the test again and see that it passes, because the output is ide nf-test test modules/samtools/index/tests/main.nf.test ``` +This produces: + ```console title="Output" 🚀 nf-test 0.9.2 https://www.nf-test.com @@ -368,11 +366,16 @@ Notice the warning, referring to the effect of the `--update-snapshot` parameter ### Takeaway -You've now written tests for a real world process from the genomics pipeline you've been working on. You've learned that it's useful to run a test with different inputs to ensure that the process works for a range of potential issues. +You've written your first module test for a genomics process, verifying that `SAMTOOLS_INDEX` correctly creates index files for different BAM files. The test suite ensures that: + +1. The process runs successfully +2. Index files are created +3. The outputs are consistent across runs +4. The process works for all sample BAM files ### What's next? -Learn how to write tests for other processes in our genomics workflow, using the setup method to handle chained processes. Evaluate whether outputs, specifically our VCF files, contain specific lines. +Learn how to write tests for other processes in our genomics workflow, using the setup method to handle chained processes. We'll also evaluate whether outputs, specifically our VCF files, contain expected variant calls. --- @@ -382,7 +385,7 @@ To test `GATK_HAPLOTYPECALLER`, we need to provide the process with the `SAMTOOL With the setup method, we can trigger the `SAMTOOLS_INDEX` process as part of the test setup, and then use its output as an input for `GATK_HAPLOTYPECALLER`. This has a cost - we're going to have to run the `SAMTOOLS_INDEX` process every time we run the test for `GATK_HAPLOTYPECALLER`- but maybe we're still developing the workflow and don't want to pre-generate test data we might have to change later. `SAMTOOLS_INDEX` process is also very quick, so maybe the benefits of pre-generating and storing its outputs are negligible. Let's see the setup method works. -### 2.1. Generate the test file stub +### 2.1. Generate and place the test file As previously, first we generate the file stub: @@ -506,7 +509,7 @@ Then we can refer to the output of that process in the `when` block where we spe } ``` -### 2.4. Run test and examine output +### 2.4. Test for specific variant calls ```bash nf-test test modules/gatk/haplotypecaller/tests/main.nf.test @@ -632,7 +635,7 @@ Once we've modified the test in this way, we can run the test multiple times, an nf-test test modules/gatk/haplotypecaller/tests/main.nf.test ``` -Produces: +This produces: ```console title="Output" 🚀 nf-test 0.9.2 @@ -650,10 +653,7 @@ SUCCESS: Executed 1 tests in 19.382s ### 2.8. Add more test data -To practice writing these kinds of tests, you can repeat the procedure for the other two input data files provided. -You'll need to make sure to copy lines from the corresponding output VCFs. - -Test for the 'mother' sample: +Add similar tests for the mother and father samples: ```groovy title="modules/gatk/haplotypecaller/tests/main.nf.test" linenums="43" test("reads_mother [bam]") { @@ -737,7 +737,7 @@ Test for the 'father' sample: nf-test test modules/gatk/haplotypecaller/tests/main.nf.test ``` -Produces: +This produces: ```console title="Output" 🚀 nf-test 0.9.2 @@ -759,21 +759,28 @@ That completes the basic test plan for this second step in the pipeline. On to t ### Takeaway -You know how to write tests for chained processes, and evaluate whether outputs contain specific lines. +You've learned how to: +1. Test processes that depend on outputs from other processes +2. Verify specific genomic variants in VCF output files +3. Handle non-deterministic outputs by checking specific content +4. Test variant calling across multiple samples ### What's next? -Learn how to write tests that use manually generated intermediate test data. +Learn how to write tests that use pre-generated test data for the joint genotyping step. --- -## 3. Use locally stored inputs +## 3. Use pre-generated test data -As we discussed at the start of section 2, in many cases it's better to use pre-generated test data and supply it as inputs to the test. This ensures that the test is repeatable and doesn't require the user to have access to the same data as the developer. It also prevents the need to re-run the upstream processes to generate the test data. +For the joint genotyping step, we'll use a different approach - using pre-generated test data. This is often preferable for: -For the third step in our pipeline we'll use manually generated intermediate test data that is co-located with the module itself, based on results we generated using our test runs. +1. Complex processes with multiple dependencies +2. Processes that take a long time to run +3. Processes where the input generation is non-deterministic +4. Processes that are part of a stable, production pipeline -Let's inspect the results we have: +Let's inspect the results we generated at the start of this section: ```bash tree results_genomics/ @@ -923,13 +930,24 @@ The output of the joint genotyping step is another VCF file, so we're going to u } ``` +By checking the content of a specific variant in the output file, this test verifies that: + +1. The joint genotyping process runs successfully +2. The output VCF contains all three samples in the correct order +3. A specific variant is called correctly with: + - Accurate genotypes for each sample (0/1 for father, 1/1 for mother and son) + - Correct read depths and genotype qualities + - Population-level statistics like allele frequency (AF=0.833) + +We haven't snapshotted the whole file, but by checking a specific variant, we can be confident that the joint genotyping process is working as expected. + ### 3.5. Run the test ```bash nf-test test modules/gatk/jointgenotyping/tests/main.nf.test ``` -Produces: +This produces: ```console title="Output" 🚀 nf-test 0.9.2 @@ -945,7 +963,10 @@ Test Process GATK_JOINTGENOTYPING SUCCESS: Executed 1 tests in 21.622s ``` -It works! And that's it for module-level tests for our pipeline. +The test passes, verifying that our joint genotyping process correctly: +1. Combines individual sample VCFs +2. Performs joint variant calling +3. Produces a multi-sample VCF with consistent genotype calls across runs ### Takeaway @@ -953,23 +974,27 @@ You know how to write tests for using inputs that have been previously generated ### What's next? -Learn how to write a workflow-level test. +Add a workflow-level test to verify the entire variant calling pipeline works end-to-end. --- ## 4. Add a workflow-level test -Now all that remains is to add a test for checking that the whole pipeline runs to completion. +Now we'll test the complete variant calling pipeline, from BAM files to joint genotypes. This verifies that: -### 4.1. Generate pipeline-level stub test file +1. All processes work together correctly +2. Data flows properly between steps +3. Final variant calls are consistent -The command is similar to the one for module tests, except it says `generate pipeline` instead of `generate process`: +### 4.1. Generate the workflow test + +Generate a test file for the complete pipeline: ```bash nf-test generate pipeline genomics-4.nf ``` -It produces a similar stub file: +This creates a basic test stub: ```groovy title="tests/genomics-4.nf.test" linenums="1" nextflow_pipeline { @@ -993,11 +1018,8 @@ nextflow_pipeline { } } - ``` -The line `assert workflow.success` is a simple assertion testing for whether the pipeline ran successfully. - !!!note In this case the test file can stay where `nf-test` created it. @@ -1018,9 +1040,9 @@ params { reads_bam = "${projectDir}/data/sample_bams.txt" // Output directory - params.outdir = "results_genomics" + outdir = "results_genomics" - // Accessory files + // Reference genome and intervals reference = "${projectDir}/data/ref/ref.fasta" reference_index = "${projectDir}/data/ref/ref.fasta.fai" reference_dict = "${projectDir}/data/ref/ref.dict" @@ -1033,9 +1055,7 @@ params { When we run the test, `nf-test` will pick up this configuration file and pull in the inputs accordingly. -### 4.3. Run the test - -Here we go! +### 4.3. Run the workflow test ```bash nf-test test tests/genomics-4.nf.test @@ -1057,10 +1077,11 @@ Test Workflow genomics-4.nf SUCCESS: Executed 1 tests in 48.486s ``` -That's it! If necessary, more nuanced assertions can be added to test for the validity and content of the pipeline outputs. -You can learn more about the different kinds of assertions you can use in the [nf-test documentation](https://www.nf-test.com/docs/assertions/assertions/). +The test passes, confirming that our complete variant calling pipeline: +1. Successfully processes all samples +2. Correctly chains together all steps -### 4.3. Run ALL the tests! +### 4.4. Run ALL tests nf-test has one more trick up it's sleeve. We can run all the tests at once! Modify the `nf-test.config` file so that nf-test looks in every directory for nf-test files. You can do this by modifying the `testsDir` parameter: @@ -1096,6 +1117,8 @@ Now, we can simply run nf-test and it will run _every single test_ in our reposi nf-test test ``` +This produces: + ```console title="Output" 🚀 nf-test 0.9.2 @@ -1131,9 +1154,7 @@ SUCCESS: Executed 8 tests in 167.772s Furthermore, we can automate this! imagine tests running every time you or a colleague tries to add new code. This is how we ensure our pipelines maintain a high standard. -### Takeaway - -## Expanded Takeaway +## Takeaway You now know how to write and run several kinds of tests for your genomics pipeline using nf-test. This testing framework helps ensure your variant calling workflow produces consistent, reliable results across different environments and as you make code changes. From d7313f64e021d5c465cf4c7da531eb6540c0ab8f Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Tue, 4 Mar 2025 18:39:22 +0000 Subject: [PATCH 11/17] Prettier --- docs/nf4_science/genomics/04_testing.md | 3 +++ 1 file changed, 3 insertions(+) diff --git a/docs/nf4_science/genomics/04_testing.md b/docs/nf4_science/genomics/04_testing.md index 2bbeae53f..111d2c27f 100644 --- a/docs/nf4_science/genomics/04_testing.md +++ b/docs/nf4_science/genomics/04_testing.md @@ -760,6 +760,7 @@ That completes the basic test plan for this second step in the pipeline. On to t ### Takeaway You've learned how to: + 1. Test processes that depend on outputs from other processes 2. Verify specific genomic variants in VCF output files 3. Handle non-deterministic outputs by checking specific content @@ -964,6 +965,7 @@ SUCCESS: Executed 1 tests in 21.622s ``` The test passes, verifying that our joint genotyping process correctly: + 1. Combines individual sample VCFs 2. Performs joint variant calling 3. Produces a multi-sample VCF with consistent genotype calls across runs @@ -1078,6 +1080,7 @@ SUCCESS: Executed 1 tests in 48.486s ``` The test passes, confirming that our complete variant calling pipeline: + 1. Successfully processes all samples 2. Correctly chains together all steps From c24dad34dd2baab51b27d23ce6b71551624a141c Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Wed, 5 Mar 2025 11:06:39 +0000 Subject: [PATCH 12/17] Misc. fixes --- docs/nf4_science/genomics/04_testing.md | 92 +++++++++++++++++++------ 1 file changed, 71 insertions(+), 21 deletions(-) diff --git a/docs/nf4_science/genomics/04_testing.md b/docs/nf4_science/genomics/04_testing.md index 111d2c27f..345e6a840 100644 --- a/docs/nf4_science/genomics/04_testing.md +++ b/docs/nf4_science/genomics/04_testing.md @@ -1,4 +1,4 @@ -# Part 4: Adding tests +# Part 4: adding tests In the first part of this course, you built a variant calling pipeline that was completely linear and processed each sample's data independently of the others. @@ -58,7 +58,7 @@ executor > local (7) [a8/d2c189] GATK_JOINTGENOTYPING | 1 of 1 ✔ ``` -Like previously, there will now be a `work` directory and a `results_genomics` directory inside your project directory. But from now on we're going to be using the `nf-test` package to test the pipeline. +Like previously, there will now be a `work` directory and a `results_genomics` directory inside your project directory. We'll actually make use of these results later on in our testing. But from now on we're going to be using the `nf-test` package to test the pipeline. ### 0.2. Initialize `nf-test` @@ -332,6 +332,56 @@ SUCCESS: Executed 1 tests in 11.947s Sometimes it's useful to test a range of different input files to ensure we're testing for a variety of potential issues. Let's also test for the mother and father's bam files in the trio from our test data. Add the following tests to the test file: +``` + test("Should index reads_mother.bam correctly") { + + when { + params { + outdir = "tests/results" + } + process { + """ + input[0] = file("${projectDir}/data/bam/reads_mother.bam") + """ + } + } + + then { + assert process.success + assert snapshot(process.out).match() + } + + } + + test("Should index reads_father.bam correctly") { + + when { + params { + outdir = "tests/results" + } + process { + """ + input[0] = file("${projectDir}/data/bam/reads_father.bam") + """ + } + } + + then { + assert process.success + assert snapshot(process.out).match() + } + + } +``` + +Then you can run the test again: + +```bash +nf-test test modules/samtools/index/tests/main.nf.test +``` + +This produces: + ```groovy title="modules/samtools/index/tests/main.nf.test" linenums="27" 🚀 nf-test 0.9.2 https://www.nf-test.com @@ -509,7 +559,7 @@ Then we can refer to the output of that process in the `when` block where we spe } ``` -### 2.4. Test for specific variant calls +Make that change and run the test again: ```bash nf-test test modules/gatk/haplotypecaller/tests/main.nf.test @@ -538,7 +588,7 @@ SUCCESS: Executed 1 tests in 20.027s It also produces a snapshot file like earlier. -### 2.5. Run again and observe failure +### 2.4. Run again and observe failure Interestingly, if you run the exact same command again, this time the test will fail. This command: @@ -594,7 +644,7 @@ As a result, we can't just expect the files to have identical md5sums even if th How do we deal with that? -### 2.6. Use a content assertion method +### 2.5. Use a content assertion method to check a specific variant One way to solve the problem is to use a [different kind of assertion](https://nf-co.re/docs/contributing/tutorials/nf-test_assertions). In this case, we're going to check for specific content instead of asserting identity. @@ -627,7 +677,7 @@ You might instead choose to read in specific lines. This approach does require choosing more carefully what we want to use as the 'signal' to test for. On the bright side, it can be used to test with great precision whether an analysis tool can consistently identify 'difficult' features (such as rare variants) as it undergoes further development. -### 2.7. Run again and observe success +### 2.6. Run again and observe success Once we've modified the test in this way, we can run the test multiple times, and it will consistently pass. @@ -651,7 +701,7 @@ Test Process GATK_HAPLOTYPECALLER SUCCESS: Executed 1 tests in 19.382s ``` -### 2.8. Add more test data +### 2.7. Add more test data Add similar tests for the mother and father samples: @@ -690,11 +740,7 @@ Add similar tests for the mother and father samples: assert path(process.out[0][0]).readLines().contains('20_10037292_10066351 3277 . G . . END=3278 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530') } } -``` -Test for the 'father' sample: - -```groovy title="modules/gatk/haplotypecaller/tests/main.nf.test" linenums="78" test("Should call father's halotype correctly") { setup { @@ -731,7 +777,7 @@ Test for the 'father' sample: } ``` -### 2.9. Run the test command +### 2.8. Run the test command ```bash nf-test test modules/gatk/haplotypecaller/tests/main.nf.test @@ -778,8 +824,9 @@ For the joint genotyping step, we'll use a different approach - using pre-genera 1. Complex processes with multiple dependencies 2. Processes that take a long time to run -3. Processes where the input generation is non-deterministic -4. Processes that are part of a stable, production pipeline +3. Processes that are part of a stable, production pipeline + +### 3.1. Generate test data Let's inspect the results we generated at the start of this section: @@ -818,7 +865,7 @@ cp -rL results_genomics/*.g.vcf results_genomics/*.g.vcf.idx modules/gatk/jointg Now we can use these files as inputs to the test we're going to write for the joint genotyping step. -### 3.1. Generate the test file stub +### 3.2. Generate the test file stub As previously, first we generate the file stub: @@ -860,7 +907,7 @@ nextflow_process { } ``` -### 3.2. Move the test file and update the script path +### 3.3. Move the test file and update the script path This time we already have a directory for tests co-located with the module's `main.nf` file, so we can move the test stub file there: @@ -886,7 +933,7 @@ script "../main.nf" process "GATK_JOINTGENOTYPING" ``` -### 3.3. Provide inputs +### 3.4. Provide inputs Fill in the inputs based on the process input definitions and rename the test accordingly: @@ -919,7 +966,7 @@ Fill in the inputs based on the process input definitions and rename the test ac } ``` -### 3.4. Use content assertions +### 3.5. Use content assertions The output of the joint genotyping step is another VCF file, so we're going to use a content assertion again. @@ -942,7 +989,7 @@ By checking the content of a specific variant in the output file, this test veri We haven't snapshotted the whole file, but by checking a specific variant, we can be confident that the joint genotyping process is working as expected. -### 3.5. Run the test +### 3.6. Run the test ```bash nf-test test modules/gatk/jointgenotyping/tests/main.nf.test @@ -972,7 +1019,10 @@ The test passes, verifying that our joint genotyping process correctly: ### Takeaway -You know how to write tests for using inputs that have been previously generated and are co-located with the module code. +You know how to: + +- Use previously generated results as inputs for tests +- Write tests using pre-generated test data ### What's next? @@ -1028,7 +1078,7 @@ nextflow_pipeline { ### 4.2. Specify input parameters -We still need to specify inputs. +We still need to specify inputs, which is done slightly different at the workflow level compared to module-level tests. There are several ways of doing this, including by specifying a profile. However, a simpler way is to set up a `params {}` block in the `nextflow.config` file that `nf-test init` originally created in the `tests` directory. From c8ead6f17f615d6e3196e8151b15f9a9e500dbe6 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Wed, 5 Mar 2025 11:12:41 +0000 Subject: [PATCH 13/17] Update solutions --- .../gatk/haplotypecaller/main.nf | 0 .../gatk/haplotypecaller/tests/main.nf.test | 111 ++ .../haplotypecaller/tests/main.nf.test.snap | 25 + .../gatk/jointgenotyping/main.nf | 0 .../tests/inputs/reads_father.bam.g.vcf | 1379 ++++++++++++++ .../tests/inputs/reads_father.bam.g.vcf.idx | Bin 0 -> 731 bytes .../tests/inputs/reads_mother.bam.g.vcf | 1676 +++++++++++++++++ .../tests/inputs/reads_mother.bam.g.vcf.idx | Bin 0 -> 811 bytes .../tests/inputs/reads_son.bam.g.vcf | 1672 ++++++++++++++++ .../tests/inputs/reads_son.bam.g.vcf.idx | Bin 0 -> 807 bytes .../gatk/jointgenotyping/tests/main.nf.test | 42 + .../{modules => }/samtools/index/main.nf | 0 .../modules/samtools/index/tests/main.nf.test | 69 + .../samtools/index/tests/main.nf.test.snap | 53 + 14 files changed, 5027 insertions(+) rename nf4-science/genomics/solutions/modules/{modules => }/gatk/haplotypecaller/main.nf (100%) create mode 100644 nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test create mode 100644 nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test.snap rename nf4-science/genomics/solutions/modules/{modules => }/gatk/jointgenotyping/main.nf (100%) create mode 100644 nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_father.bam.g.vcf create mode 100644 nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_father.bam.g.vcf.idx create mode 100644 nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_mother.bam.g.vcf create mode 100644 nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_mother.bam.g.vcf.idx create mode 100644 nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_son.bam.g.vcf create mode 100644 nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_son.bam.g.vcf.idx create mode 100644 nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/main.nf.test rename nf4-science/genomics/solutions/modules/{modules => }/samtools/index/main.nf (100%) create mode 100644 nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test create mode 100644 nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test.snap diff --git a/nf4-science/genomics/solutions/modules/modules/gatk/haplotypecaller/main.nf b/nf4-science/genomics/solutions/modules/gatk/haplotypecaller/main.nf similarity index 100% rename from nf4-science/genomics/solutions/modules/modules/gatk/haplotypecaller/main.nf rename to nf4-science/genomics/solutions/modules/gatk/haplotypecaller/main.nf diff --git a/nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test b/nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test new file mode 100644 index 000000000..da9a88003 --- /dev/null +++ b/nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test @@ -0,0 +1,111 @@ +nextflow_process { + + name "Test Process GATK_HAPLOTYPECALLER" + script "../main.nf" + process "GATK_HAPLOTYPECALLER" + + test("Should call son's halotype correctly") { + + setup { + run("SAMTOOLS_INDEX") { + script "../../../samtools/index/main.nf" + process { + """ + input[0] = file("${projectDir}/data/bam/reads_son.bam") + """ + } + } + } + when { + params { + outdir = "tests/results" + } + process { + """ + input[0] = SAMTOOLS_INDEX.out + input[1] = file("${projectDir}/data/ref/ref.fasta") + input[2] = file("${projectDir}/data/ref/ref.fasta.fai") + input[3] = file("${projectDir}/data/ref/ref.dict") + input[4] = file("${projectDir}/data/ref/intervals.bed") + """ + } + } + + then { + assert process.success + assert path(process.out[0][0]).readLines().contains('#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT reads_son') + assert path(process.out[0][0]).readLines().contains('20_10037292_10066351 3277 . G . . END=3282 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,719') + } + + } + + test("Should call mother's halotype correctly") { + + setup { + run("SAMTOOLS_INDEX") { + script "../../../samtools/index/main.nf" + process { + """ + input[0] = file("${projectDir}/data/bam/reads_mother.bam") + """ + } + } + } + + when { + params { + outdir = "tests/results" + } + process { + """ + input[0] = SAMTOOLS_INDEX.out + input[1] = file("${projectDir}/data/ref/ref.fasta") + input[2] = file("${projectDir}/data/ref/ref.fasta.fai") + input[3] = file("${projectDir}/data/ref/ref.dict") + input[4] = file("${projectDir}/data/ref/intervals.bed") + """ + } + } + + then { + assert process.success + assert path(process.out[0][0]).readLines().contains('#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT reads_mother') + assert path(process.out[0][0]).readLines().contains('20_10037292_10066351 3277 . G . . END=3278 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530') + } + } + + test("Should call father's halotype correctly") { + + setup { + run("SAMTOOLS_INDEX") { + script "../../../samtools/index/main.nf" + process { + """ + input[0] = file("${projectDir}/data/bam/reads_father.bam") + """ + } + } + } + + when { + params { + outdir = "tests/results" + } + process { + """ + input[0] = SAMTOOLS_INDEX.out + input[1] = file("${projectDir}/data/ref/ref.fasta") + input[2] = file("${projectDir}/data/ref/ref.fasta.fai") + input[3] = file("${projectDir}/data/ref/ref.dict") + input[4] = file("${projectDir}/data/ref/intervals.bed") + """ + } + } + + then { + assert process.success + assert path(process.out[0][0]).readLines().contains('#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT reads_father') + assert path(process.out[0][0]).readLines().contains('20_10037292_10066351 3277 . G . . END=3281 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,120,1800') + } + } +} diff --git a/nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test.snap b/nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test.snap new file mode 100644 index 000000000..a23ed7b35 --- /dev/null +++ b/nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test.snap @@ -0,0 +1,25 @@ +{ + "Should call son's halotype correctly": { + "content": [ + { + "0": [ + "reads_son.bam.g.vcf:md5,069316cdd4328542ffc6ae247b1dac39" + ], + "1": [ + "reads_son.bam.g.vcf.idx:md5,dc36c18f2afdc546f41e68b2687e9334" + ], + "idx": [ + "reads_son.bam.g.vcf.idx:md5,dc36c18f2afdc546f41e68b2687e9334" + ], + "vcf": [ + "reads_son.bam.g.vcf:md5,069316cdd4328542ffc6ae247b1dac39" + ] + } + ], + "meta": { + "nf-test": "0.9.2", + "nextflow": "24.10.0" + }, + "timestamp": "2025-03-04T09:26:58.537420116" + } +} \ No newline at end of file diff --git a/nf4-science/genomics/solutions/modules/modules/gatk/jointgenotyping/main.nf b/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/main.nf similarity index 100% rename from nf4-science/genomics/solutions/modules/modules/gatk/jointgenotyping/main.nf rename to nf4-science/genomics/solutions/modules/gatk/jointgenotyping/main.nf diff --git a/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_father.bam.g.vcf b/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_father.bam.g.vcf new file mode 100644 index 000000000..5e4843d4e --- /dev/null +++ b/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_father.bam.g.vcf @@ -0,0 +1,1379 @@ +##fileformat=VCFv4.2 +##ALT= +##FILTER= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##GATKCommandLine= +##GVCFBlock0-1=minGQ=0(inclusive),maxGQ=1(exclusive) +##GVCFBlock1-2=minGQ=1(inclusive),maxGQ=2(exclusive) +##GVCFBlock10-11=minGQ=10(inclusive),maxGQ=11(exclusive) +##GVCFBlock11-12=minGQ=11(inclusive),maxGQ=12(exclusive) +##GVCFBlock12-13=minGQ=12(inclusive),maxGQ=13(exclusive) +##GVCFBlock13-14=minGQ=13(inclusive),maxGQ=14(exclusive) +##GVCFBlock14-15=minGQ=14(inclusive),maxGQ=15(exclusive) +##GVCFBlock15-16=minGQ=15(inclusive),maxGQ=16(exclusive) +##GVCFBlock16-17=minGQ=16(inclusive),maxGQ=17(exclusive) +##GVCFBlock17-18=minGQ=17(inclusive),maxGQ=18(exclusive) +##GVCFBlock18-19=minGQ=18(inclusive),maxGQ=19(exclusive) +##GVCFBlock19-20=minGQ=19(inclusive),maxGQ=20(exclusive) +##GVCFBlock2-3=minGQ=2(inclusive),maxGQ=3(exclusive) +##GVCFBlock20-21=minGQ=20(inclusive),maxGQ=21(exclusive) +##GVCFBlock21-22=minGQ=21(inclusive),maxGQ=22(exclusive) +##GVCFBlock22-23=minGQ=22(inclusive),maxGQ=23(exclusive) +##GVCFBlock23-24=minGQ=23(inclusive),maxGQ=24(exclusive) +##GVCFBlock24-25=minGQ=24(inclusive),maxGQ=25(exclusive) +##GVCFBlock25-26=minGQ=25(inclusive),maxGQ=26(exclusive) +##GVCFBlock26-27=minGQ=26(inclusive),maxGQ=27(exclusive) +##GVCFBlock27-28=minGQ=27(inclusive),maxGQ=28(exclusive) +##GVCFBlock28-29=minGQ=28(inclusive),maxGQ=29(exclusive) +##GVCFBlock29-30=minGQ=29(inclusive),maxGQ=30(exclusive) +##GVCFBlock3-4=minGQ=3(inclusive),maxGQ=4(exclusive) +##GVCFBlock30-31=minGQ=30(inclusive),maxGQ=31(exclusive) +##GVCFBlock31-32=minGQ=31(inclusive),maxGQ=32(exclusive) +##GVCFBlock32-33=minGQ=32(inclusive),maxGQ=33(exclusive) +##GVCFBlock33-34=minGQ=33(inclusive),maxGQ=34(exclusive) +##GVCFBlock34-35=minGQ=34(inclusive),maxGQ=35(exclusive) +##GVCFBlock35-36=minGQ=35(inclusive),maxGQ=36(exclusive) +##GVCFBlock36-37=minGQ=36(inclusive),maxGQ=37(exclusive) +##GVCFBlock37-38=minGQ=37(inclusive),maxGQ=38(exclusive) +##GVCFBlock38-39=minGQ=38(inclusive),maxGQ=39(exclusive) +##GVCFBlock39-40=minGQ=39(inclusive),maxGQ=40(exclusive) +##GVCFBlock4-5=minGQ=4(inclusive),maxGQ=5(exclusive) +##GVCFBlock40-41=minGQ=40(inclusive),maxGQ=41(exclusive) +##GVCFBlock41-42=minGQ=41(inclusive),maxGQ=42(exclusive) +##GVCFBlock42-43=minGQ=42(inclusive),maxGQ=43(exclusive) +##GVCFBlock43-44=minGQ=43(inclusive),maxGQ=44(exclusive) +##GVCFBlock44-45=minGQ=44(inclusive),maxGQ=45(exclusive) +##GVCFBlock45-46=minGQ=45(inclusive),maxGQ=46(exclusive) +##GVCFBlock46-47=minGQ=46(inclusive),maxGQ=47(exclusive) +##GVCFBlock47-48=minGQ=47(inclusive),maxGQ=48(exclusive) +##GVCFBlock48-49=minGQ=48(inclusive),maxGQ=49(exclusive) +##GVCFBlock49-50=minGQ=49(inclusive),maxGQ=50(exclusive) +##GVCFBlock5-6=minGQ=5(inclusive),maxGQ=6(exclusive) +##GVCFBlock50-51=minGQ=50(inclusive),maxGQ=51(exclusive) +##GVCFBlock51-52=minGQ=51(inclusive),maxGQ=52(exclusive) +##GVCFBlock52-53=minGQ=52(inclusive),maxGQ=53(exclusive) +##GVCFBlock53-54=minGQ=53(inclusive),maxGQ=54(exclusive) +##GVCFBlock54-55=minGQ=54(inclusive),maxGQ=55(exclusive) +##GVCFBlock55-56=minGQ=55(inclusive),maxGQ=56(exclusive) +##GVCFBlock56-57=minGQ=56(inclusive),maxGQ=57(exclusive) +##GVCFBlock57-58=minGQ=57(inclusive),maxGQ=58(exclusive) +##GVCFBlock58-59=minGQ=58(inclusive),maxGQ=59(exclusive) +##GVCFBlock59-60=minGQ=59(inclusive),maxGQ=60(exclusive) +##GVCFBlock6-7=minGQ=6(inclusive),maxGQ=7(exclusive) +##GVCFBlock60-70=minGQ=60(inclusive),maxGQ=70(exclusive) +##GVCFBlock7-8=minGQ=7(inclusive),maxGQ=8(exclusive) +##GVCFBlock70-80=minGQ=70(inclusive),maxGQ=80(exclusive) +##GVCFBlock8-9=minGQ=8(inclusive),maxGQ=9(exclusive) +##GVCFBlock80-90=minGQ=80(inclusive),maxGQ=90(exclusive) +##GVCFBlock9-10=minGQ=9(inclusive),maxGQ=10(exclusive) +##GVCFBlock90-99=minGQ=90(inclusive),maxGQ=99(exclusive) +##GVCFBlock99-100=minGQ=99(inclusive),maxGQ=100(exclusive) +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##INFO= +##contig= +##source=HaplotypeCaller +#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT reads_father +20_10037292_10066351 3277 . G . . END=3281 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,120,1800 +20_10037292_10066351 3282 . T . . END=3282 GT:DP:GQ:MIN_DP:PL 0/0:45:95:45:0,95,1267 +20_10037292_10066351 3283 . T . . END=3300 GT:DP:GQ:MIN_DP:PL 0/0:47:99:45:0,112,1375 +20_10037292_10066351 3301 . C . . END=3301 GT:DP:GQ:MIN_DP:PL 0/0:52:88:52:0,88,1492 +20_10037292_10066351 3302 . T . . END=3307 GT:DP:GQ:MIN_DP:PL 0/0:51:99:49:0,112,1471 +20_10037292_10066351 3308 . A . . END=3308 GT:DP:GQ:MIN_DP:PL 0/0:49:84:49:0,84,1399 +20_10037292_10066351 3309 . A . . END=3437 GT:DP:GQ:MIN_DP:PL 0/0:47:99:41:0,107,1349 +20_10037292_10066351 3438 . T . . END=3447 GT:DP:GQ:MIN_DP:PL 0/0:41:90:38:0,90,1108 +20_10037292_10066351 3448 . T . . END=3449 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20_10037292_10066351 3450 . A . . END=3450 GT:DP:GQ:MIN_DP:PL 0/0:35:50:35:0,50,880 +20_10037292_10066351 3451 . C . . END=3451 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20_10037292_10066351 3452 . C . . END=3452 GT:DP:GQ:MIN_DP:PL 0/0:36:68:36:0,68,1042 +20_10037292_10066351 3453 . T . . END=3453 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20_10037292_10066351 3454 . G . . END=3454 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,948 +20_10037292_10066351 3455 . T . . END=3458 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 +20_10037292_10066351 3459 . T . . END=3460 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20_10037292_10066351 3461 . C . . END=3461 GT:DP:GQ:MIN_DP:PL 0/0:39:57:39:0,57,992 +20_10037292_10066351 3462 . T . . END=3462 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1485 +20_10037292_10066351 3463 . G . . END=3463 GT:DP:GQ:MIN_DP:PL 0/0:37:59:37:0,59,910 +20_10037292_10066351 3464 . T . . END=3468 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 3469 . C . . END=3469 GT:DP:GQ:MIN_DP:PL 0/0:37:59:37:0,59,939 +20_10037292_10066351 3470 . T . . END=3472 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20_10037292_10066351 3473 . T . . END=3473 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1129 +20_10037292_10066351 3474 . T . . END=3474 GT:DP:GQ:MIN_DP:PL 0/0:38:92:38:0,92,1102 +20_10037292_10066351 3475 . C . . END=3475 GT:DP:GQ:MIN_DP:PL 0/0:38:63:38:0,63,957 +20_10037292_10066351 3476 . T . . END=3478 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1197 +20_10037292_10066351 3479 . T . . END=3479 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1155 +20_10037292_10066351 3480 . C CT, 359.60 . BaseQRankSum=0.220;DP=32;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=115200,32;ReadPosRankSum=-1.147 GT:AD:DP:GQ:PL:SB 0/1:15,16,0:31:99:367,0,375,412,423,835:6,9,9,7 +20_10037292_10066351 3481 . T . . END=3482 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 3483 . T . . END=3483 GT:DP:GQ:MIN_DP:PL 0/0:32:65:32:0,65,949 +20_10037292_10066351 3484 . T . . END=3484 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 3485 . T . . END=3487 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 3488 . T . . END=3489 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,889 +20_10037292_10066351 3490 . C . . END=3490 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20_10037292_10066351 3491 . A . . END=3491 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,996 +20_10037292_10066351 3492 . A . . END=3494 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20_10037292_10066351 3495 . T . . END=3495 GT:DP:GQ:MIN_DP:PL 0/0:35:60:35:0,60,952 +20_10037292_10066351 3496 . A . . END=3497 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 3498 . A . . END=3498 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,937 +20_10037292_10066351 3499 . C . . END=3499 GT:DP:GQ:MIN_DP:PL 0/0:29:86:29:0,86,758 +20_10037292_10066351 3500 . G . . END=3500 GT:DP:GQ:MIN_DP:PL 0/0:31:58:31:0,58,646 +20_10037292_10066351 3501 . T . . END=3504 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20_10037292_10066351 3505 . A . . END=3505 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,913 +20_10037292_10066351 3506 . C . . END=3506 GT:DP:GQ:MIN_DP:PL 0/0:31:45:31:0,45,739 +20_10037292_10066351 3507 . T . . END=3511 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 3512 . A . . END=3512 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,994 +20_10037292_10066351 3513 . A . . END=3517 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20_10037292_10066351 3518 . C . . END=3519 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,885 +20_10037292_10066351 3520 . AT A, 288.60 . BaseQRankSum=1.033;DP=34;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=122400,34;ReadPosRankSum=0.701 GT:AD:DP:GQ:PL:SB 0/1:18,13,0:31:99:296,0,424,350,463,813:8,10,7,6 +20_10037292_10066351 3522 . T . . END=3543 GT:DP:GQ:MIN_DP:PL 0/0:50:99:44:0,112,1347 +20_10037292_10066351 3544 . A . . END=3544 GT:DP:GQ:MIN_DP:PL 0/0:49:89:49:0,89,1374 +20_10037292_10066351 3545 . C . . END=3615 GT:DP:GQ:MIN_DP:PL 0/0:50:99:44:0,113,1172 +20_10037292_10066351 3616 . A . . END=3616 GT:DP:GQ:MIN_DP:PL 0/0:45:84:45:0,84,1268 +20_10037292_10066351 3617 . T . . END=3698 GT:DP:GQ:MIN_DP:PL 0/0:44:99:37:0,104,1096 +20_10037292_10066351 3699 . A . . END=3699 GT:DP:GQ:MIN_DP:PL 0/0:38:66:38:0,66,1090 +20_10037292_10066351 3700 . G . . END=3701 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1116 +20_10037292_10066351 3702 . A . . END=3702 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1137 +20_10037292_10066351 3703 . T . . END=3704 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20_10037292_10066351 3705 . G . . END=3705 GT:DP:GQ:MIN_DP:PL 0/0:40:85:40:0,85,1190 +20_10037292_10066351 3706 . G . . END=3710 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,114,1710 +20_10037292_10066351 3711 . G . . END=3711 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1263 +20_10037292_10066351 3712 . G . . END=3749 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,114,1209 +20_10037292_10066351 3750 . A . . END=3750 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1191 +20_10037292_10066351 3751 . A . . END=3865 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,100,1137 +20_10037292_10066351 3866 . G . . END=3866 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1117 +20_10037292_10066351 3867 . G . . END=3867 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20_10037292_10066351 3868 . T . . END=3868 GT:DP:GQ:MIN_DP:PL 0/0:39:95:39:0,95,1109 +20_10037292_10066351 3869 . G . . END=3869 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20_10037292_10066351 3870 . T . . END=3870 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1088 +20_10037292_10066351 3871 . A . . END=3871 GT:DP:GQ:MIN_DP:PL 0/0:38:68:38:0,68,1086 +20_10037292_10066351 3872 . C . . END=3951 GT:DP:GQ:MIN_DP:PL 0/0:47:99:36:0,108,1151 +20_10037292_10066351 3952 . T . . END=3952 GT:DP:GQ:MIN_DP:PL 0/0:46:89:46:0,89,1351 +20_10037292_10066351 3953 . G . . END=4011 GT:DP:GQ:MIN_DP:PL 0/0:48:99:46:0,120,1800 +20_10037292_10066351 4012 . C T, 1432.06 . DP=47;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=169200,47 GT:AD:DP:GQ:PL:SB 1/1:0,46,0:46:99:1446,137,0,1446,137,1446:0,0,23,23 +20_10037292_10066351 4013 . G . . END=4035 GT:DP:GQ:MIN_DP:PL 0/0:48:99:42:0,108,1267 +20_10037292_10066351 4036 . T . . END=4036 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1242 +20_10037292_10066351 4037 . T . . END=4060 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,104,1268 +20_10037292_10066351 4061 . A . . END=4061 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1217 +20_10037292_10066351 4062 . A . . END=4078 GT:DP:GQ:MIN_DP:PL 0/0:45:99:43:0,108,1620 +20_10037292_10066351 4079 . C . . END=4079 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1207 +20_10037292_10066351 4080 . A . . END=4121 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,102,1157 +20_10037292_10066351 4122 . G . . END=4122 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1137 +20_10037292_10066351 4123 . G . . END=4123 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20_10037292_10066351 4124 . G . . END=4125 GT:DP:GQ:MIN_DP:PL 0/0:39:92:38:0,92,1088 +20_10037292_10066351 4126 . C . . END=4129 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,105,1575 +20_10037292_10066351 4130 . A . . END=4130 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,1018 +20_10037292_10066351 4131 . C . . END=4154 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1046 +20_10037292_10066351 4155 . T . . END=4155 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1137 +20_10037292_10066351 4156 . A . . END=4163 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,100,1181 +20_10037292_10066351 4164 . T . . END=4164 GT:DP:GQ:MIN_DP:PL 0/0:40:97:40:0,97,1234 +20_10037292_10066351 4165 . A . . END=4177 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1088 +20_10037292_10066351 4178 . A . . END=4178 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1165 +20_10037292_10066351 4179 . T . . END=4198 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,99,1182 +20_10037292_10066351 4199 . G . . END=4201 GT:DP:GQ:MIN_DP:PL 0/0:39:96:37:0,96,1440 +20_10037292_10066351 4202 . G . . END=4204 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20_10037292_10066351 4205 . T . . END=4217 GT:DP:GQ:MIN_DP:PL 0/0:34:93:32:0,93,1395 +20_10037292_10066351 4218 . G . . END=4218 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1030 +20_10037292_10066351 4219 . A . . END=4219 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 4220 . T . . END=4238 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1350 +20_10037292_10066351 4239 . C . . END=4240 GT:DP:GQ:MIN_DP:PL 0/0:34:66:33:0,66,924 +20_10037292_10066351 4241 . T . . END=4241 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20_10037292_10066351 4242 . G . . END=4242 GT:DP:GQ:MIN_DP:PL 0/0:34:71:34:0,71,1040 +20_10037292_10066351 4243 . G . . END=4243 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,952 +20_10037292_10066351 4244 . T . . END=4244 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 4245 . T . . END=4245 GT:DP:GQ:MIN_DP:PL 0/0:33:67:33:0,67,968 +20_10037292_10066351 4246 . G . . END=4247 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 4248 . T . . END=4249 GT:DP:GQ:MIN_DP:PL 0/0:33:64:33:0,64,932 +20_10037292_10066351 4250 . G . . END=4250 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20_10037292_10066351 4251 . T . . END=4252 GT:DP:GQ:MIN_DP:PL 0/0:32:64:32:0,64,904 +20_10037292_10066351 4253 . A . . END=4258 GT:DP:GQ:MIN_DP:PL 0/0:35:71:33:0,71,1001 +20_10037292_10066351 4259 . T . . END=4259 GT:DP:GQ:MIN_DP:PL 0/0:36:57:36:0,57,1051 +20_10037292_10066351 4260 . G . . END=4260 GT:DP:GQ:MIN_DP:PL 0/0:37:41:37:0,41,993 +20_10037292_10066351 4261 . G . . END=4261 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20_10037292_10066351 4262 . T . . END=4263 GT:DP:GQ:MIN_DP:PL 0/0:36:71:35:0,71,1014 +20_10037292_10066351 4264 . T . . END=4264 GT:DP:GQ:MIN_DP:PL 0/0:37:62:37:0,62,1075 +20_10037292_10066351 4265 . G . . END=4265 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1050 +20_10037292_10066351 4266 . T . . END=4267 GT:DP:GQ:MIN_DP:PL 0/0:37:82:37:0,82,1073 +20_10037292_10066351 4268 . T . . END=4271 GT:DP:GQ:MIN_DP:PL 0/0:37:75:37:0,75,1020 +20_10037292_10066351 4272 . A . . END=4272 GT:DP:GQ:MIN_DP:PL 0/0:38:88:38:0,88,1090 +20_10037292_10066351 4273 . C . . END=4273 GT:DP:GQ:MIN_DP:PL 0/0:38:66:38:0,66,1032 +20_10037292_10066351 4274 . C . . END=4274 GT:DP:GQ:MIN_DP:PL 0/0:38:48:38:0,48,1047 +20_10037292_10066351 4275 . A . . END=4287 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20_10037292_10066351 4288 . T . . END=4288 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1099 +20_10037292_10066351 4289 . A . . END=4289 GT:DP:GQ:MIN_DP:PL 0/0:36:45:36:0,45,916 +20_10037292_10066351 4290 . T . . END=4290 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1107 +20_10037292_10066351 4291 . C . . END=4292 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20_10037292_10066351 4293 . G . . END=4293 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1065 +20_10037292_10066351 4294 . A . . END=4299 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 4300 . G . . END=4304 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1058 +20_10037292_10066351 4305 . A . . END=4307 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +20_10037292_10066351 4308 . A . . END=4308 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1179 +20_10037292_10066351 4309 . G . . END=4311 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20_10037292_10066351 4312 . G . . END=4312 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1067 +20_10037292_10066351 4313 . G . . END=4318 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,102,1130 +20_10037292_10066351 4319 . G . . END=4319 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1257 +20_10037292_10066351 4320 . A . . END=4326 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,105,1575 +20_10037292_10066351 4327 . A . . END=4327 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1145 +20_10037292_10066351 4328 . A . . END=4329 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,106,1200 +20_10037292_10066351 4330 . G . . END=4330 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1128 +20_10037292_10066351 4331 . A . . END=4334 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,107,1132 +20_10037292_10066351 4335 . A . . END=4336 GT:DP:GQ:MIN_DP:PL 0/0:38:94:38:0,94,1187 +20_10037292_10066351 4337 . A . . END=4337 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,114,1096 +20_10037292_10066351 4338 . C . . END=4338 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1117 +20_10037292_10066351 4339 . C . . END=4358 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,99,1173 +20_10037292_10066351 4359 . A . . END=4359 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1130 +20_10037292_10066351 4360 . G . . END=4360 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1244 +20_10037292_10066351 4361 . G . . END=4373 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,106,1101 +20_10037292_10066351 4374 . G . . END=4374 GT:DP:GQ:MIN_DP:PL 0/0:39:74:39:0,74,1076 +20_10037292_10066351 4375 . A . . END=4375 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1081 +20_10037292_10066351 4376 . T . . END=4380 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1077 +20_10037292_10066351 4381 . T . . END=4381 GT:DP:GQ:MIN_DP:PL 0/0:38:86:38:0,86,1076 +20_10037292_10066351 4382 . T . . END=4382 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,101,1117 +20_10037292_10066351 4383 . T . . END=4383 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1096 +20_10037292_10066351 4384 . C . . END=4384 GT:DP:GQ:MIN_DP:PL 0/0:38:66:38:0,66,1028 +20_10037292_10066351 4385 . A . . END=4385 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1150 +20_10037292_10066351 4386 . G . . END=4386 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1053 +20_10037292_10066351 4387 . A . . END=4387 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,114,1710 +20_10037292_10066351 4388 . C . . END=4388 GT:DP:GQ:MIN_DP:PL 0/0:39:78:39:0,78,1010 +20_10037292_10066351 4389 . C . . END=4394 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,983 +20_10037292_10066351 4395 . A . . END=4395 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1120 +20_10037292_10066351 4396 . G . . END=4403 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,107,1141 +20_10037292_10066351 4404 . A . . END=4404 GT:DP:GQ:MIN_DP:PL 0/0:42:59:42:0,59,935 +20_10037292_10066351 4405 . A . . END=4405 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,114,1710 +20_10037292_10066351 4406 . C . . END=4406 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20_10037292_10066351 4407 . A . . END=4408 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,939 +20_10037292_10066351 4409 . A ATG,ATATG, 955.03 . DP=34;ExcessHet=0.0000;MLEAC=0,2,0;MLEAF=0.00,1.00,0.00;RAW_MQandDP=122400,34 GT:AD:DP:GQ:PL:SB 2/2:0,0,28,0:28:90:969,998,1257,90,96,0,1003,1147,100,1113:0,0,9,19 +20_10037292_10066351 4410 . T . . END=4423 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20_10037292_10066351 4424 . T . . END=4424 GT:DP:GQ:MIN_DP:PL 0/0:32:72:32:0,72,959 +20_10037292_10066351 4425 . G . . END=4431 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 4432 . T . . END=4432 GT:DP:GQ:MIN_DP:PL 0/0:32:65:32:0,65,948 +20_10037292_10066351 4433 . G . . END=4435 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20_10037292_10066351 4436 . C . . END=4436 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,943 +20_10037292_10066351 4437 . A . . END=4437 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 4438 . T . . END=4443 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20_10037292_10066351 4444 . T . . END=4450 GT:DP:GQ:MIN_DP:PL 0/0:33:84:28:0,84,723 +20_10037292_10066351 4451 . G . . END=4451 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20_10037292_10066351 4452 . T . . END=4459 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1215 +20_10037292_10066351 4460 . T . . END=4460 GT:DP:GQ:MIN_DP:PL 0/0:32:75:32:0,75,1125 +20_10037292_10066351 4461 . A . . END=4461 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1215 +20_10037292_10066351 4462 . T . . END=4463 GT:DP:GQ:MIN_DP:PL 0/0:31:78:30:0,78,1170 +20_10037292_10066351 4464 . T TA, 621.60 . BaseQRankSum=0.108;DP=33;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=118800,33;ReadPosRankSum=1.266 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,17,0:32:99:0|1:4464_T_TA:629,0,554,674,605,1280:4464:6,9,6,11 +20_10037292_10066351 4465 . T TA, 621.60 . BaseQRankSum=-0.225;DP=32;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=115200,32;ReadPosRankSum=0.910 GT:AD:DP:GQ:PGT:PID:PL:PS:SB 0|1:15,17,0:32:99:0|1:4464_T_TA:629,0,554,674,605,1280:4464:6,9,6,11 +20_10037292_10066351 4466 . T . . END=4467 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20_10037292_10066351 4468 . T . . END=4472 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20_10037292_10066351 4473 . G . . END=4473 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1021 +20_10037292_10066351 4474 . A . . END=4476 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,105,994 +20_10037292_10066351 4477 . C . . END=4477 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,963 +20_10037292_10066351 4478 . A . . END=4481 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1046 +20_10037292_10066351 4482 . T . . END=4492 GT:DP:GQ:MIN_DP:PL 0/0:35:91:34:0,91,981 +20_10037292_10066351 4493 . G . . END=4495 GT:DP:GQ:MIN_DP:PL 0/0:32:80:31:0,80,945 +20_10037292_10066351 4496 . G . . END=4496 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 4497 . T . . END=4503 GT:DP:GQ:MIN_DP:PL 0/0:32:87:30:0,87,1305 +20_10037292_10066351 4504 . A . . END=4504 GT:DP:GQ:MIN_DP:PL 0/0:30:61:30:0,61,825 +20_10037292_10066351 4505 . T . . END=4512 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 4513 . C . . END=4514 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,812 +20_10037292_10066351 4515 . T . . END=4519 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20_10037292_10066351 4520 . A . . END=4520 GT:DP:GQ:MIN_DP:PL 0/0:28:71:28:0,71,822 +20_10037292_10066351 4521 . C . . END=4521 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,799 +20_10037292_10066351 4522 . C . . END=4524 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20_10037292_10066351 4525 . C . . END=4533 GT:DP:GQ:MIN_DP:PL 0/0:27:62:25:0,62,779 +20_10037292_10066351 4534 . G . . END=4534 GT:DP:GQ:MIN_DP:PL 0/0:25:57:25:0,57,722 +20_10037292_10066351 4535 . G . . END=4535 GT:DP:GQ:MIN_DP:PL 0/0:25:63:25:0,63,945 +20_10037292_10066351 4536 . T . . END=4541 GT:DP:GQ:MIN_DP:PL 0/0:23:57:22:0,57,855 +20_10037292_10066351 4542 . A . . END=4544 GT:DP:GQ:MIN_DP:PL 0/0:24:63:24:0,63,945 +20_10037292_10066351 4545 . T . . END=4545 GT:DP:GQ:MIN_DP:PL 0/0:23:54:23:0,54,644 +20_10037292_10066351 4546 . T . . END=4550 GT:DP:GQ:MIN_DP:PL 0/0:24:61:23:0,61,673 +20_10037292_10066351 4551 . T . . END=4551 GT:DP:GQ:MIN_DP:PL 0/0:25:42:25:0,42,739 +20_10037292_10066351 4552 . G . . END=4563 GT:DP:GQ:MIN_DP:PL 0/0:24:69:23:0,69,660 +20_10037292_10066351 4564 . C . . END=4564 GT:DP:GQ:MIN_DP:PL 0/0:22:48:22:0,48,565 +20_10037292_10066351 4565 . G . . END=4567 GT:DP:GQ:MIN_DP:PL 0/0:24:63:22:0,63,580 +20_10037292_10066351 4568 . T . . END=4568 GT:DP:GQ:MIN_DP:PL 0/0:24:59:24:0,59,679 +20_10037292_10066351 4569 . T . . END=4572 GT:DP:GQ:MIN_DP:PL 0/0:25:61:24:0,61,691 +20_10037292_10066351 4573 . G . . END=4573 GT:DP:GQ:MIN_DP:PL 0/0:25:45:25:0,45,636 +20_10037292_10066351 4574 . T . . END=4577 GT:DP:GQ:MIN_DP:PL 0/0:26:63:26:0,63,731 +20_10037292_10066351 4578 . T . . END=4584 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,692 +20_10037292_10066351 4585 . G . . END=4585 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,678 +20_10037292_10066351 4586 . A . . END=4586 GT:DP:GQ:MIN_DP:PL 0/0:24:53:24:0,53,694 +20_10037292_10066351 4587 . G . . END=4604 GT:DP:GQ:MIN_DP:PL 0/0:24:60:24:0,60,642 +20_10037292_10066351 4605 . T . . END=4605 GT:DP:GQ:MIN_DP:PL 0/0:24:54:24:0,54,810 +20_10037292_10066351 4606 . G . . END=4609 GT:DP:GQ:MIN_DP:PL 0/0:24:57:23:0,57,855 +20_10037292_10066351 4610 . A . . END=4612 GT:DP:GQ:MIN_DP:PL 0/0:24:54:21:0,54,810 +20_10037292_10066351 4613 . C . . END=4613 GT:DP:GQ:MIN_DP:PL 0/0:22:50:22:0,50,605 +20_10037292_10066351 4614 . T . . END=4616 GT:DP:GQ:MIN_DP:PL 0/0:23:54:21:0,54,810 +20_10037292_10066351 4617 . T . . END=4617 GT:DP:GQ:MIN_DP:PL 0/0:21:49:21:0,49,590 +20_10037292_10066351 4618 . C . . END=4618 GT:DP:GQ:MIN_DP:PL 0/0:21:36:21:0,36,562 +20_10037292_10066351 4619 . T . . END=4619 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 +20_10037292_10066351 4620 . C . . END=4620 GT:DP:GQ:MIN_DP:PL 0/0:19:37:19:0,37,499 +20_10037292_10066351 4621 . G . . END=4626 GT:DP:GQ:MIN_DP:PL 0/0:19:54:18:0,54,532 +20_10037292_10066351 4627 . C . . END=4627 GT:DP:GQ:MIN_DP:PL 0/0:19:24:19:0,24,493 +20_10037292_10066351 4628 . T . . END=4628 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 +20_10037292_10066351 4629 . G . . END=4629 GT:DP:GQ:MIN_DP:PL 0/0:19:42:19:0,42,568 +20_10037292_10066351 4630 . A . . END=4631 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 +20_10037292_10066351 4632 . C . . END=4632 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +20_10037292_10066351 4633 . T . . END=4633 GT:DP:GQ:MIN_DP:PL 0/0:20:48:20:0,48,592 +20_10037292_10066351 4634 . C . . END=4634 GT:DP:GQ:MIN_DP:PL 0/0:20:57:20:0,57,855 +20_10037292_10066351 4635 . A . . END=4638 GT:DP:GQ:MIN_DP:PL 0/0:24:66:23:0,66,990 +20_10037292_10066351 4639 . G . . END=4639 GT:DP:GQ:MIN_DP:PL 0/0:23:54:23:0,54,667 +20_10037292_10066351 4640 . A . . END=4641 GT:DP:GQ:MIN_DP:PL 0/0:23:56:23:0,56,654 +20_10037292_10066351 4642 . C . . END=4644 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +20_10037292_10066351 4645 . C . . END=4649 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,763 +20_10037292_10066351 4650 . T . . END=4650 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,757 +20_10037292_10066351 4651 . T . . END=4657 GT:DP:GQ:MIN_DP:PL 0/0:26:75:26:0,75,1125 +20_10037292_10066351 4658 . C . . END=4658 GT:DP:GQ:MIN_DP:PL 0/0:26:61:26:0,61,781 +20_10037292_10066351 4659 . C . . END=4660 GT:DP:GQ:MIN_DP:PL 0/0:28:80:27:0,80,793 +20_10037292_10066351 4661 . A . . END=4661 GT:DP:GQ:MIN_DP:PL 0/0:28:73:28:0,73,846 +20_10037292_10066351 4662 . A . . END=4664 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,870 +20_10037292_10066351 4665 . T . . END=4665 GT:DP:GQ:MIN_DP:PL 0/0:28:71:28:0,71,787 +20_10037292_10066351 4666 . A . . END=4666 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,793 +20_10037292_10066351 4667 . C . . END=4670 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,917 +20_10037292_10066351 4671 . G . . END=4671 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,880 +20_10037292_10066351 4672 . A . . END=4679 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,909 +20_10037292_10066351 4680 . T . . END=4680 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,985 +20_10037292_10066351 4681 . G . . END=4681 GT:DP:GQ:MIN_DP:PL 0/0:31:65:31:0,65,862 +20_10037292_10066351 4682 . T . . END=4682 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,981 +20_10037292_10066351 4683 . G . . END=4683 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,948 +20_10037292_10066351 4684 . A . . END=4691 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20_10037292_10066351 4692 . C . . END=4697 GT:DP:GQ:MIN_DP:PL 0/0:29:78:27:0,78,1170 +20_10037292_10066351 4698 . G . . END=4701 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 4702 . T . . END=4706 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,928 +20_10037292_10066351 4707 . A . . END=4720 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,921 +20_10037292_10066351 4721 . T . . END=4721 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,937 +20_10037292_10066351 4722 . C . . END=4727 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20_10037292_10066351 4728 . A . . END=4734 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20_10037292_10066351 4735 . T . . END=4735 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,1021 +20_10037292_10066351 4736 . A . . END=4736 GT:DP:GQ:MIN_DP:PL 0/0:33:70:33:0,70,940 +20_10037292_10066351 4737 . C . . END=4739 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 4740 . T . . END=4740 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,989 +20_10037292_10066351 4741 . A . . END=4745 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 4746 . G . . END=4754 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 4755 . A . . END=4755 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,991 +20_10037292_10066351 4756 . A . . END=4760 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20_10037292_10066351 4761 . A . . END=4761 GT:DP:GQ:MIN_DP:PL 0/0:37:74:37:0,74,1046 +20_10037292_10066351 4762 . G . . END=4762 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1043 +20_10037292_10066351 4763 . A . . END=4768 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1087 +20_10037292_10066351 4769 . G . . END=4769 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1036 +20_10037292_10066351 4770 . A . . END=4772 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20_10037292_10066351 4773 . A . . END=4774 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1041 +20_10037292_10066351 4775 . T . . END=4775 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 4776 . C . . END=4778 GT:DP:GQ:MIN_DP:PL 0/0:39:96:38:0,96,1440 +20_10037292_10066351 4779 . T . . END=4779 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20_10037292_10066351 4780 . A . . END=4780 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20_10037292_10066351 4781 . T . . END=4789 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1485 +20_10037292_10066351 4790 . A . . END=4791 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 4792 . A . . END=4807 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1070 +20_10037292_10066351 4808 . C . . END=4808 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1087 +20_10037292_10066351 4809 . A . . END=4810 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1167 +20_10037292_10066351 4811 . T . . END=4811 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1048 +20_10037292_10066351 4812 . A . . END=4817 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 4818 . C . . END=4818 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1096 +20_10037292_10066351 4819 . C . . END=4855 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,102,1195 +20_10037292_10066351 4856 . T . . END=4856 GT:DP:GQ:MIN_DP:PL 0/0:44:90:44:0,90,1268 +20_10037292_10066351 4857 . A . . END=4893 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,99,1256 +20_10037292_10066351 4894 . C . . END=4894 GT:DP:GQ:MIN_DP:PL 0/0:44:83:44:0,83,1313 +20_10037292_10066351 4895 . T . . END=4974 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,107,1201 +20_10037292_10066351 4975 . T . . END=4975 GT:DP:GQ:MIN_DP:PL 0/0:43:81:43:0,81,1251 +20_10037292_10066351 4976 . A . . END=4986 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,105,1575 +20_10037292_10066351 4987 . A . . END=4990 GT:DP:GQ:MIN_DP:PL 0/0:38:93:37:0,93,1395 +20_10037292_10066351 4991 . C . . END=4992 GT:DP:GQ:MIN_DP:PL 0/0:37:87:36:0,87,1305 +20_10037292_10066351 4993 . G . . END=4994 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1350 +20_10037292_10066351 4995 . G . . END=4995 GT:DP:GQ:MIN_DP:PL 0/0:36:89:36:0,89,1095 +20_10037292_10066351 4996 . G . . END=5001 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20_10037292_10066351 5002 . T . . END=5002 GT:DP:GQ:MIN_DP:PL 0/0:31:80:31:0,80,916 +20_10037292_10066351 5003 . T . . END=5005 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 5006 . G . . END=5006 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1068 +20_10037292_10066351 5007 . A . . END=5008 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 5009 . C . . END=5016 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 5017 . G . . END=5017 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 5018 . G . . END=5026 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1485 +20_10037292_10066351 5027 . C T, 1150.06 . DP=37;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=133200,37 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1164,108,0,1164,108,1164:0,0,19,17 +20_10037292_10066351 5028 . C . . END=5034 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1206 +20_10037292_10066351 5035 . A . . END=5035 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1168 +20_10037292_10066351 5036 . T . . END=5045 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,99,1179 +20_10037292_10066351 5046 . A . . END=5046 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1162 +20_10037292_10066351 5047 . G . . END=5055 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,101,1171 +20_10037292_10066351 5056 . G . . END=5056 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1102 +20_10037292_10066351 5057 . A . . END=5058 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1142 +20_10037292_10066351 5059 . G . . END=5061 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1117 +20_10037292_10066351 5062 . T . . END=5064 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20_10037292_10066351 5065 . A . . END=5065 GT:DP:GQ:MIN_DP:PL 0/0:38:88:38:0,88,1130 +20_10037292_10066351 5066 . A . . END=5066 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20_10037292_10066351 5067 . C . . END=5067 GT:DP:GQ:MIN_DP:PL 0/0:38:86:38:0,86,1147 +20_10037292_10066351 5068 . C . . END=5068 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,111,1665 +20_10037292_10066351 5069 . A . . END=5071 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1159 +20_10037292_10066351 5072 . G . . END=5072 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,103,1233 +20_10037292_10066351 5073 . A . . END=5073 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1186 +20_10037292_10066351 5074 . G . . END=5074 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,101,1226 +20_10037292_10066351 5075 . G . . END=5075 GT:DP:GQ:MIN_DP:PL 0/0:40:75:40:0,75,1121 +20_10037292_10066351 5076 . T . . END=5079 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,104,1188 +20_10037292_10066351 5080 . T . . END=5080 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1172 +20_10037292_10066351 5081 . C . . END=5125 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,102,1196 +20_10037292_10066351 5126 . A . . END=5126 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1147 +20_10037292_10066351 5127 . G . . END=5127 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20_10037292_10066351 5128 . T . . END=5128 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1099 +20_10037292_10066351 5129 . C . . END=5187 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1143 +20_10037292_10066351 5188 . G . . END=5188 GT:DP:GQ:MIN_DP:PL 0/0:36:76:36:0,76,1135 +20_10037292_10066351 5189 . G . . END=5190 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1149 +20_10037292_10066351 5191 . G . . END=5191 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1167 +20_10037292_10066351 5192 . G . . END=5193 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,111,1665 +20_10037292_10066351 5194 . T . . END=5194 GT:DP:GQ:MIN_DP:PL 0/0:39:85:39:0,85,1200 +20_10037292_10066351 5195 . C . . END=5228 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1180 +20_10037292_10066351 5229 . T . . END=5229 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1052 +20_10037292_10066351 5230 . A . . END=5237 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,102,1168 +20_10037292_10066351 5238 . G . . END=5238 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1187 +20_10037292_10066351 5239 . C . . END=5249 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20_10037292_10066351 5250 . A . . END=5254 GT:DP:GQ:MIN_DP:PL 0/0:37:96:35:0,96,1440 +20_10037292_10066351 5255 . C . . END=5262 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 5263 . T . . END=5263 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,998 +20_10037292_10066351 5264 . G . . END=5271 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1013 +20_10037292_10066351 5272 . C . . END=5275 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 5276 . T . . END=5278 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 5279 . T . . END=5281 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,983 +20_10037292_10066351 5282 . A . . END=5315 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1161 +20_10037292_10066351 5316 . A . . END=5323 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20_10037292_10066351 5324 . C . . END=5324 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1014 +20_10037292_10066351 5325 . A . . END=5334 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 5335 . G . . END=5337 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,992 +20_10037292_10066351 5338 . C . . END=5341 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 5342 . G . . END=5342 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,954 +20_10037292_10066351 5343 . T . . END=5344 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,1005 +20_10037292_10066351 5345 . C . . END=5345 GT:DP:GQ:MIN_DP:PL 0/0:33:69:33:0,69,988 +20_10037292_10066351 5346 . A . . END=5346 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1105 +20_10037292_10066351 5347 . G . . END=5347 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 5348 . G . . END=5349 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,1004 +20_10037292_10066351 5350 . G . . END=5350 GT:DP:GQ:MIN_DP:PL 0/0:34:52:34:0,52,932 +20_10037292_10066351 5351 . C . . END=5351 GT:DP:GQ:MIN_DP:PL 0/0:34:46:34:0,46,977 +20_10037292_10066351 5352 . A . . END=5353 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,1000 +20_10037292_10066351 5354 . A . . END=5354 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1002 +20_10037292_10066351 5355 . A . . END=5355 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 5356 . T . . END=5358 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20_10037292_10066351 5359 . C . . END=5359 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1003 +20_10037292_10066351 5360 . A . . END=5361 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1086 +20_10037292_10066351 5362 . A . . END=5364 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 5365 . G . . END=5365 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1083 +20_10037292_10066351 5366 . T . . END=5366 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 5367 . G . . END=5367 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20_10037292_10066351 5368 . A . . END=5369 GT:DP:GQ:MIN_DP:PL 0/0:35:85:34:0,85,965 +20_10037292_10066351 5370 . T . . END=5370 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20_10037292_10066351 5371 . C . . END=5371 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,1033 +20_10037292_10066351 5372 . C . . END=5372 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,980 +20_10037292_10066351 5373 . T . . END=5374 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20_10037292_10066351 5375 . G . . END=5376 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 5377 . G . . END=5383 GT:DP:GQ:MIN_DP:PL 0/0:32:80:31:0,80,937 +20_10037292_10066351 5384 . T . . END=5388 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,888 +20_10037292_10066351 5389 . T . . END=5394 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20_10037292_10066351 5395 . A . . END=5395 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,896 +20_10037292_10066351 5396 . C . . END=5400 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20_10037292_10066351 5401 . T . . END=5401 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,835 +20_10037292_10066351 5402 . T . . END=5402 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 5403 . T . . END=5403 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,901 +20_10037292_10066351 5404 . T . . END=5404 GT:DP:GQ:MIN_DP:PL 0/0:31:68:31:0,68,872 +20_10037292_10066351 5405 . T . . END=5405 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 5406 . A . . END=5406 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,986 +20_10037292_10066351 5407 . A . . END=5417 GT:DP:GQ:MIN_DP:PL 0/0:39:99:34:0,99,1485 +20_10037292_10066351 5418 . A . . END=5418 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20_10037292_10066351 5419 . A . . END=5419 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1140 +20_10037292_10066351 5420 . C . . END=5422 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20_10037292_10066351 5423 . C . . END=5435 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,99,1485 +20_10037292_10066351 5436 . A . . END=5436 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1058 +20_10037292_10066351 5437 . A . . END=5437 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1088 +20_10037292_10066351 5438 . C . . END=5440 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 5441 . G . . END=5441 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1044 +20_10037292_10066351 5442 . C . . END=5442 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20_10037292_10066351 5443 . C . . END=5443 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1064 +20_10037292_10066351 5444 . T . . END=5446 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 5447 . T . . END=5447 GT:DP:GQ:MIN_DP:PL 0/0:37:89:37:0,89,1070 +20_10037292_10066351 5448 . T . . END=5453 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20_10037292_10066351 5454 . G . . END=5454 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1131 +20_10037292_10066351 5455 . A . . END=5468 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,105,1273 +20_10037292_10066351 5469 . A G, 545.64 . BaseQRankSum=-3.665;DP=42;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=151200,42;ReadPosRankSum=1.500 GT:AD:DP:GQ:PL:SB 0/1:18,23,0:41:99:553,0,486,607,555,1162:12,6,14,9 +20_10037292_10066351 5470 . G . . END=5486 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,117,1755 +20_10037292_10066351 5487 . A . . END=5487 GT:DP:GQ:MIN_DP:PL 0/0:43:98:43:0,98,1225 +20_10037292_10066351 5488 . A . . END=5495 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,108,1203 +20_10037292_10066351 7536 . C . . END=7551 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,1485 +20_10037292_10066351 7552 . T . . END=7552 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1073 +20_10037292_10066351 7553 . A . . END=7555 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 7556 . C . . END=7556 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,991 +20_10037292_10066351 7557 . A G, 305.64 . BaseQRankSum=-1.362;DP=37;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=133200,37;ReadPosRankSum=1.111 GT:AD:DP:GQ:PL:SB 0/1:19,15,0:34:99:313,0,493,370,538,907:11,8,8,7 +20_10037292_10066351 7558 . C . . END=7558 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 7559 . T . . END=7578 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1485 +20_10037292_10066351 7579 . T . . END=7579 GT:DP:GQ:MIN_DP:PL 0/0:38:92:38:0,92,1186 +20_10037292_10066351 7580 . C . . END=7582 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +20_10037292_10066351 7583 . C . . END=7583 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1177 +20_10037292_10066351 7584 . A . . END=7586 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1575 +20_10037292_10066351 7587 . T . . END=7587 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1163 +20_10037292_10066351 7588 . T . . END=7599 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,100,1167 +20_10037292_10066351 7600 . C . . END=7600 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1131 +20_10037292_10066351 7601 . C . . END=7612 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,101,1205 +20_10037292_10066351 7613 . T . . END=7613 GT:DP:GQ:MIN_DP:PL 0/0:40:95:40:0,95,1175 +20_10037292_10066351 7614 . C . . END=7617 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,111,1229 +20_10037292_10066351 7618 . G . . END=7618 GT:DP:GQ:MIN_DP:PL 0/0:39:95:39:0,95,1191 +20_10037292_10066351 7619 . T . . END=7619 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20_10037292_10066351 7620 . A . . END=7620 GT:DP:GQ:MIN_DP:PL 0/0:38:92:38:0,92,1159 +20_10037292_10066351 7621 . T . . END=7621 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,117,1233 +20_10037292_10066351 7622 . A . . END=7622 GT:DP:GQ:MIN_DP:PL 0/0:39:95:39:0,95,1202 +20_10037292_10066351 7623 . T . . END=7634 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,102,1213 +20_10037292_10066351 7635 . G . . END=7635 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1213 +20_10037292_10066351 7636 . G . . END=7640 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,105,1575 +20_10037292_10066351 7641 . T . . END=7641 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1158 +20_10037292_10066351 7642 . T . . END=7643 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20_10037292_10066351 7644 . A . . END=7644 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,1085 +20_10037292_10066351 7645 . T . . END=7652 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,105,1140 +20_10037292_10066351 7653 . A . . END=7653 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20_10037292_10066351 7654 . G . . END=7656 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20_10037292_10066351 7657 . A . . END=7661 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1395 +20_10037292_10066351 7662 . G . . END=7666 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20_10037292_10066351 7667 . A . . END=7667 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,992 +20_10037292_10066351 7668 . C . . END=7681 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1088 +20_10037292_10066351 7682 . C . . END=7682 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1110 +20_10037292_10066351 7683 . C . . END=7689 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1530 +20_10037292_10066351 7690 . A . . END=7690 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,1015 +20_10037292_10066351 7691 . C . . END=7700 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1575 +20_10037292_10066351 7701 . A . . END=7705 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20_10037292_10066351 7706 . C . . END=7706 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1305 +20_10037292_10066351 7707 . A . . END=7713 GT:DP:GQ:MIN_DP:PL 0/0:37:90:34:0,90,1350 +20_10037292_10066351 7714 . A . . END=7714 GT:DP:GQ:MIN_DP:PL 0/0:36:89:36:0,89,1115 +20_10037292_10066351 7715 . C . . END=7715 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20_10037292_10066351 7716 . A . . END=7716 GT:DP:GQ:MIN_DP:PL 0/0:36:89:36:0,89,1160 +20_10037292_10066351 7717 . G . . END=7717 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 7718 . T . . END=7719 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 7720 . C . . END=7720 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,1055 +20_10037292_10066351 7721 . T . . END=7722 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20_10037292_10066351 7723 . A . . END=7723 GT:DP:GQ:MIN_DP:PL 0/0:34:66:34:0,66,975 +20_10037292_10066351 7724 . A . . END=7724 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1060 +20_10037292_10066351 7725 . C . . END=7725 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 7726 . A . . END=7726 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1088 +20_10037292_10066351 7727 . A . . END=7728 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1073 +20_10037292_10066351 7729 . G . . END=7729 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1042 +20_10037292_10066351 7730 . T . . END=7731 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20_10037292_10066351 7732 . G . . END=7732 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1019 +20_10037292_10066351 7733 . A . . END=7740 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 7741 . A . . END=7745 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 7746 . G . . END=7748 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,979 +20_10037292_10066351 7749 . T . . END=7750 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1024 +20_10037292_10066351 7751 . C . . END=7751 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,992 +20_10037292_10066351 7752 . C . . END=7753 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 7754 . C . . END=7754 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,964 +20_10037292_10066351 7755 . C . . END=7755 GT:DP:GQ:MIN_DP:PL 0/0:33:58:33:0,58,922 +20_10037292_10066351 7756 . A . . END=7761 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 7762 . A . . END=7762 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,973 +20_10037292_10066351 7763 . T . . END=7767 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,888 +20_10037292_10066351 7768 . A . . END=7769 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 7770 . C . . END=7771 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1081 +20_10037292_10066351 7772 . T . . END=7776 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1120 +20_10037292_10066351 7777 . T . . END=7777 GT:DP:GQ:MIN_DP:PL 0/0:38:88:38:0,88,1094 +20_10037292_10066351 7778 . A . . END=7785 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1159 +20_10037292_10066351 7786 . G T, 1052.06 . DP=35;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=126000,35 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:1066,102,0,1066,102,1066:0,0,8,26 +20_10037292_10066351 7787 . C . . END=7788 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20_10037292_10066351 7789 . C . . END=7789 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1118 +20_10037292_10066351 7790 . A . . END=7790 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,111,1665 +20_10037292_10066351 7791 . T . . END=7791 GT:DP:GQ:MIN_DP:PL 0/0:41:85:41:0,85,1172 +20_10037292_10066351 7792 . T . . END=7813 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,105,1215 +20_10037292_10066351 7814 . T . . END=7814 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1167 +20_10037292_10066351 7815 . T . . END=7820 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,111,1665 +20_10037292_10066351 7821 . T . . END=7821 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1114 +20_10037292_10066351 7822 . T . . END=7822 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +20_10037292_10066351 7823 . A . . END=7823 GT:DP:GQ:MIN_DP:PL 0/0:39:94:39:0,94,1129 +20_10037292_10066351 7824 . C . . END=7837 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1123 +20_10037292_10066351 7838 . C . . END=7838 GT:DP:GQ:MIN_DP:PL 0/0:39:70:39:0,70,1119 +20_10037292_10066351 7839 . A . . END=7844 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,102,1164 +20_10037292_10066351 7845 . C . . END=7846 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1123 +20_10037292_10066351 7847 . C . . END=7854 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,108,1620 +20_10037292_10066351 7855 . A . . END=7857 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1089 +20_10037292_10066351 7858 . C . . END=7861 GT:DP:GQ:MIN_DP:PL 0/0:38:75:37:0,75,1065 +20_10037292_10066351 7862 . G . . END=7862 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1123 +20_10037292_10066351 7863 . G . . END=7865 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,100,1124 +20_10037292_10066351 7866 . T . . END=7866 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1129 +20_10037292_10066351 7867 . A . . END=7884 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,101,1090 +20_10037292_10066351 7885 . G . . END=7885 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1227 +20_10037292_10066351 7886 . G . . END=7897 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,110,1179 +20_10037292_10066351 7898 . T . . END=7898 GT:DP:GQ:MIN_DP:PL 0/0:41:59:41:0,59,1084 +20_10037292_10066351 7899 . A . . END=7913 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1236 +20_10037292_10066351 7914 . T . . END=7914 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20_10037292_10066351 7915 . T . . END=7915 GT:DP:GQ:MIN_DP:PL 0/0:39:82:39:0,82,1146 +20_10037292_10066351 7916 . A . . END=7927 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1485 +20_10037292_10066351 7928 . C . . END=7928 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1114 +20_10037292_10066351 7929 . A . . END=7930 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20_10037292_10066351 7931 . A . . END=7934 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20_10037292_10066351 7935 . G . . END=7935 GT:DP:GQ:MIN_DP:PL 0/0:37:75:37:0,75,1128 +20_10037292_10066351 7936 . G . . END=7941 GT:DP:GQ:MIN_DP:PL 0/0:38:90:35:0,90,1350 +20_10037292_10066351 7942 . T . . END=7942 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,979 +20_10037292_10066351 7943 . T . . END=7945 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 7946 . C . . END=7946 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 7947 . A . . END=7948 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 7949 . T . . END=7956 GT:DP:GQ:MIN_DP:PL 0/0:31:80:30:0,80,971 +20_10037292_10066351 7957 . T . . END=7957 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,897 +20_10037292_10066351 7958 . G . . END=7981 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,888 +20_10037292_10066351 7982 . A . . END=7984 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20_10037292_10066351 7985 . A . . END=7985 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 7986 . G . . END=7991 GT:DP:GQ:MIN_DP:PL 0/0:30:77:29:0,77,809 +20_10037292_10066351 7992 . A . . END=8000 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20_10037292_10066351 8001 . G . . END=8009 GT:DP:GQ:MIN_DP:PL 0/0:29:70:29:0,70,855 +20_10037292_10066351 8010 . G . . END=8021 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20_10037292_10066351 8022 . T . . END=8022 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,890 +20_10037292_10066351 8023 . T . . END=8023 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 8024 . G . . END=8024 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,900 +20_10037292_10066351 8025 . A . . END=8026 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20_10037292_10066351 8027 . T . . END=8027 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,870 +20_10037292_10066351 8028 . A . . END=8034 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20_10037292_10066351 8035 . G . . END=8037 GT:DP:GQ:MIN_DP:PL 0/0:28:73:28:0,73,921 +20_10037292_10066351 8038 . G . . END=8038 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 8039 . C . . END=8039 GT:DP:GQ:MIN_DP:PL 0/0:29:70:29:0,70,822 +20_10037292_10066351 8040 . A . . END=8041 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20_10037292_10066351 8042 . T . . END=8042 GT:DP:GQ:MIN_DP:PL 0/0:29:71:29:0,71,842 +20_10037292_10066351 8043 . T . . END=8045 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 8046 . C . . END=8046 GT:DP:GQ:MIN_DP:PL 0/0:27:68:27:0,68,780 +20_10037292_10066351 8047 . A . . END=8047 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20_10037292_10066351 8048 . G . . END=8050 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 8051 . C . . END=8051 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,745 +20_10037292_10066351 8052 . A . . END=8054 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20_10037292_10066351 8055 . C . . END=8055 GT:DP:GQ:MIN_DP:PL 0/0:29:63:29:0,63,853 +20_10037292_10066351 8056 . C . . END=8056 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,837 +20_10037292_10066351 8057 . C . . END=8057 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 8058 . A . . END=8059 GT:DP:GQ:MIN_DP:PL 0/0:28:71:28:0,71,844 +20_10037292_10066351 8060 . T . . END=8060 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 +20_10037292_10066351 8061 . C . . END=8061 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,1125 +20_10037292_10066351 8062 . C . . END=8062 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,798 +20_10037292_10066351 8063 . A . . END=8073 GT:DP:GQ:MIN_DP:PL 0/0:30:71:27:0,71,849 +20_10037292_10066351 8074 . T . . END=8074 GT:DP:GQ:MIN_DP:PL 0/0:25:43:25:0,43,699 +20_10037292_10066351 8075 . A . . END=8075 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,812 +20_10037292_10066351 8076 . A . . END=8076 GT:DP:GQ:MIN_DP:PL 0/0:26:47:26:0,47,685 +20_10037292_10066351 8077 . A . . END=8077 GT:DP:GQ:MIN_DP:PL 0/0:26:75:26:0,75,1125 +20_10037292_10066351 8078 . A . . END=8078 GT:DP:GQ:MIN_DP:PL 0/0:26:66:26:0,66,773 +20_10037292_10066351 8079 . G . . END=8079 GT:DP:GQ:MIN_DP:PL 0/0:26:75:26:0,75,1125 +20_10037292_10066351 8080 . C . . END=8080 GT:DP:GQ:MIN_DP:PL 0/0:26:31:26:0,31,667 +20_10037292_10066351 8081 . A . . END=8081 GT:DP:GQ:MIN_DP:PL 0/0:26:75:26:0,75,1125 +20_10037292_10066351 8082 . A . . END=8082 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 8083 . T . . END=8083 GT:DP:GQ:MIN_DP:PL 0/0:28:37:28:0,37,743 +20_10037292_10066351 8084 . G . . END=8084 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 8085 . T . . END=8085 GT:DP:GQ:MIN_DP:PL 0/0:28:25:28:0,25,743 +20_10037292_10066351 8086 . G . . END=8086 GT:DP:GQ:MIN_DP:PL 0/0:28:71:28:0,71,783 +20_10037292_10066351 8087 . A . . END=8087 GT:DP:GQ:MIN_DP:PL 0/0:28:56:28:0,56,773 +20_10037292_10066351 8088 . C . . END=8088 GT:DP:GQ:MIN_DP:PL 0/0:28:25:28:0,25,675 +20_10037292_10066351 8089 . A . . END=8089 GT:DP:GQ:MIN_DP:PL 0/0:28:50:28:0,50,799 +20_10037292_10066351 8090 . A . . END=8090 GT:DP:GQ:MIN_DP:PL 0/0:28:64:28:0,64,842 +20_10037292_10066351 8091 . G . . END=8091 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 8092 . A . . END=8092 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20_10037292_10066351 8093 . A . . END=8093 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20_10037292_10066351 8094 . A . . END=8095 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,881 +20_10037292_10066351 8096 . A . . END=8098 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 +20_10037292_10066351 8099 . T . . END=8099 GT:DP:GQ:MIN_DP:PL 0/0:29:58:29:0,58,810 +20_10037292_10066351 8100 . A . . END=8101 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20_10037292_10066351 8102 . A . . END=8105 GT:DP:GQ:MIN_DP:PL 0/0:29:72:28:0,72,888 +20_10037292_10066351 8106 . T . . END=8106 GT:DP:GQ:MIN_DP:PL 0/0:28:50:28:0,50,808 +20_10037292_10066351 8107 . G . . END=8107 GT:DP:GQ:MIN_DP:PL 0/0:28:56:28:0,56,829 +20_10037292_10066351 8108 . G . . END=8108 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +20_10037292_10066351 8109 . T . . END=8110 GT:DP:GQ:MIN_DP:PL 0/0:28:64:27:0,64,791 +20_10037292_10066351 8111 . A . . END=8111 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +20_10037292_10066351 8112 . G . . END=8112 GT:DP:GQ:MIN_DP:PL 0/0:27:64:27:0,64,816 +20_10037292_10066351 8113 . G . . END=8113 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +20_10037292_10066351 8114 . G . . END=8114 GT:DP:GQ:MIN_DP:PL 0/0:24:55:24:0,55,659 +20_10037292_10066351 8115 . A . . END=8115 GT:DP:GQ:MIN_DP:PL 0/0:24:66:24:0,66,990 +20_10037292_10066351 8116 . A . . END=8116 GT:DP:GQ:MIN_DP:PL 0/0:24:58:24:0,58,663 +20_10037292_10066351 8117 . A . . END=8117 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +20_10037292_10066351 8118 . A . . END=8118 GT:DP:GQ:MIN_DP:PL 0/0:27:50:27:0,50,791 +20_10037292_10066351 8119 . G . . END=8119 GT:DP:GQ:MIN_DP:PL 0/0:27:65:27:0,65,801 +20_10037292_10066351 8120 . A . . END=8120 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20_10037292_10066351 8121 . G . . END=8121 GT:DP:GQ:MIN_DP:PL 0/0:27:64:27:0,64,817 +20_10037292_10066351 8122 . G . . END=8122 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +20_10037292_10066351 8123 . C . . END=8123 GT:DP:GQ:MIN_DP:PL 0/0:27:52:27:0,52,788 +20_10037292_10066351 8124 . C . . END=8125 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +20_10037292_10066351 8126 . A . . END=8126 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +20_10037292_10066351 8127 . A . . END=8128 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +20_10037292_10066351 8129 . C . . END=8129 GT:DP:GQ:MIN_DP:PL 0/0:27:54:27:0,54,786 +20_10037292_10066351 8130 . C . . END=8130 GT:DP:GQ:MIN_DP:PL 0/0:27:33:27:0,33,742 +20_10037292_10066351 8131 . A . . END=8133 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 +20_10037292_10066351 8134 . T . . END=8134 GT:DP:GQ:MIN_DP:PL 0/0:25:44:25:0,44,709 +20_10037292_10066351 8135 . C . . END=8135 GT:DP:GQ:MIN_DP:PL 0/0:26:47:26:0,47,776 +20_10037292_10066351 8136 . C . . END=8136 GT:DP:GQ:MIN_DP:PL 0/0:26:75:26:0,75,1125 +20_10037292_10066351 8137 . T . . END=8137 GT:DP:GQ:MIN_DP:PL 0/0:26:33:26:0,33,726 +20_10037292_10066351 8138 . G . . END=8138 GT:DP:GQ:MIN_DP:PL 0/0:25:48:25:0,48,757 +20_10037292_10066351 8139 . G . . END=8139 GT:DP:GQ:MIN_DP:PL 0/0:27:50:27:0,50,789 +20_10037292_10066351 8140 . A . . END=8141 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20_10037292_10066351 8142 . A . . END=8142 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,835 +20_10037292_10066351 8143 . G . . END=8143 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20_10037292_10066351 8144 . A . . END=8144 GT:DP:GQ:MIN_DP:PL 0/0:28:51:28:0,51,816 +20_10037292_10066351 8145 . T . . END=8145 GT:DP:GQ:MIN_DP:PL 0/0:28:61:28:0,61,806 +20_10037292_10066351 8146 . T . . END=8146 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +20_10037292_10066351 8147 . T . . END=8147 GT:DP:GQ:MIN_DP:PL 0/0:28:47:28:0,47,801 +20_10037292_10066351 8148 . G . . END=8149 GT:DP:GQ:MIN_DP:PL 0/0:29:75:28:0,75,871 +20_10037292_10066351 8150 . A . . END=8151 GT:DP:GQ:MIN_DP:PL 0/0:30:59:30:0,59,887 +20_10037292_10066351 8152 . G . . END=8153 GT:DP:GQ:MIN_DP:PL 0/0:30:64:30:0,64,889 +20_10037292_10066351 8154 . C . . END=8154 GT:DP:GQ:MIN_DP:PL 0/0:29:58:29:0,58,820 +20_10037292_10066351 8155 . A . . END=8155 GT:DP:GQ:MIN_DP:PL 0/0:28:54:28:0,54,826 +20_10037292_10066351 8156 . A . . END=8156 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20_10037292_10066351 8157 . C . . END=8157 GT:DP:GQ:MIN_DP:PL 0/0:28:54:28:0,54,782 +20_10037292_10066351 8158 . C . . END=8158 GT:DP:GQ:MIN_DP:PL 0/0:29:71:29:0,71,836 +20_10037292_10066351 8159 . A . . END=8159 GT:DP:GQ:MIN_DP:PL 0/0:27:56:27:0,56,768 +20_10037292_10066351 8160 . T . . END=8160 GT:DP:GQ:MIN_DP:PL 0/0:27:49:27:0,49,780 +20_10037292_10066351 8161 . A . . END=8161 GT:DP:GQ:MIN_DP:PL 0/0:27:48:27:0,48,760 +20_10037292_10066351 8162 . T . . END=8163 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20_10037292_10066351 8164 . G . . END=8164 GT:DP:GQ:MIN_DP:PL 0/0:28:66:28:0,66,833 +20_10037292_10066351 8165 . A . . END=8165 GT:DP:GQ:MIN_DP:PL 0/0:28:50:28:0,50,793 +20_10037292_10066351 8166 . T . . END=8167 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,852 +20_10037292_10066351 8168 . T . . END=8168 GT:DP:GQ:MIN_DP:PL 0/0:26:40:26:0,40,718 +20_10037292_10066351 8169 . G . . END=8169 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20_10037292_10066351 8170 . G . . END=8170 GT:DP:GQ:MIN_DP:PL 0/0:27:43:27:0,43,761 +20_10037292_10066351 8171 . A . . END=8171 GT:DP:GQ:MIN_DP:PL 0/0:27:47:27:0,47,744 +20_10037292_10066351 8172 . A . . END=8172 GT:DP:GQ:MIN_DP:PL 0/0:28:9:28:0,9,692 +20_10037292_10066351 8173 . A . . END=8173 GT:DP:GQ:MIN_DP:PL 0/0:28:57:28:0,57,856 +20_10037292_10066351 8174 . G . . END=8174 GT:DP:GQ:MIN_DP:PL 0/0:29:71:29:0,71,870 +20_10037292_10066351 8175 . T . . END=8175 GT:DP:GQ:MIN_DP:PL 0/0:30:60:30:0,60,885 +20_10037292_10066351 8176 . G . . END=8176 GT:DP:GQ:MIN_DP:PL 0/0:30:32:30:0,32,810 +20_10037292_10066351 8177 . A . . END=8177 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20_10037292_10066351 8178 . T . . END=8178 GT:DP:GQ:MIN_DP:PL 0/0:33:38:33:0,38,893 +20_10037292_10066351 8179 . G . . END=8179 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,895 +20_10037292_10066351 8180 . G . . END=8180 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,931 +20_10037292_10066351 8181 . A . . END=8181 GT:DP:GQ:MIN_DP:PL 0/0:33:67:33:0,67,985 +20_10037292_10066351 8182 . T . . END=8182 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1018 +20_10037292_10066351 8183 . T . . END=8183 GT:DP:GQ:MIN_DP:PL 0/0:33:67:33:0,67,940 +20_10037292_10066351 8184 . T . . END=8184 GT:DP:GQ:MIN_DP:PL 0/0:33:19:33:0,19,807 +20_10037292_10066351 8185 . C . . END=8185 GT:DP:GQ:MIN_DP:PL 0/0:33:68:33:0,68,934 +20_10037292_10066351 8186 . C . . END=8186 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,993 +20_10037292_10066351 8187 . A . . END=8188 GT:DP:GQ:MIN_DP:PL 0/0:34:64:34:0,64,982 +20_10037292_10066351 8189 . T . . END=8189 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1063 +20_10037292_10066351 8190 . T . . END=8190 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1158 +20_10037292_10066351 8191 . G . . END=8191 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,100,1114 +20_10037292_10066351 8192 . A . . END=8192 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1115 +20_10037292_10066351 8193 . T . . END=8193 GT:DP:GQ:MIN_DP:PL 0/0:38:52:38:0,52,1041 +20_10037292_10066351 8194 . T . . END=8194 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20_10037292_10066351 8195 . C . . END=8195 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1156 +20_10037292_10066351 8196 . T . . END=8196 GT:DP:GQ:MIN_DP:PL 0/0:38:66:38:0,66,1142 +20_10037292_10066351 8197 . G . . END=8197 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1113 +20_10037292_10066351 8198 . C . . END=8198 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,100,1170 +20_10037292_10066351 8199 . T . . END=8200 GT:DP:GQ:MIN_DP:PL 0/0:38:73:38:0,73,1056 +20_10037292_10066351 8201 . A . . END=8204 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1009 +20_10037292_10066351 8205 . G . . END=8205 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,992 +20_10037292_10066351 8206 . T . . END=8206 GT:DP:GQ:MIN_DP:PL 0/0:38:36:38:0,36,1047 +20_10037292_10066351 8207 . C . . END=8207 GT:DP:GQ:MIN_DP:PL 0/0:39:85:39:0,85,1120 +20_10037292_10066351 8208 . C . . END=8208 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1126 +20_10037292_10066351 8209 . C . . END=8209 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1117 +20_10037292_10066351 8210 . T . . END=8210 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1226 +20_10037292_10066351 8211 . T . . END=8211 GT:DP:GQ:MIN_DP:PL 0/0:39:83:39:0,83,1161 +20_10037292_10066351 8212 . G . . END=8228 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,100,1138 +20_10037292_10066351 8229 . G . . END=8229 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1080 +20_10037292_10066351 8230 . A . . END=8233 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1530 +20_10037292_10066351 8234 . T . . END=8234 GT:DP:GQ:MIN_DP:PL 0/0:36:60:36:0,60,1038 +20_10037292_10066351 8235 . A . . END=8235 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1158 +20_10037292_10066351 8236 . G . . END=8236 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 8237 . C . . END=8237 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1069 +20_10037292_10066351 8238 . A . . END=8243 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 8244 . A . . END=8244 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1065 +20_10037292_10066351 8245 . C . . END=8249 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1022 +20_10037292_10066351 8250 . T . . END=8250 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,999 +20_10037292_10066351 8251 . C . . END=8251 GT:DP:GQ:MIN_DP:PL 0/0:33:98:33:0,98,993 +20_10037292_10066351 8252 . C . . END=8256 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1012 +20_10037292_10066351 8257 . G . . END=8257 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1098 +20_10037292_10066351 8258 . C . . END=8259 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20_10037292_10066351 8260 . T . . END=8260 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1112 +20_10037292_10066351 8261 . C . . END=8261 GT:DP:GQ:MIN_DP:PL 0/0:38:88:38:0,88,1185 +20_10037292_10066351 8262 . T . . END=8268 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1530 +20_10037292_10066351 8269 . C . . END=8269 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1123 +20_10037292_10066351 8270 . C . . END=8272 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20_10037292_10066351 8273 . T . . END=8273 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1171 +20_10037292_10066351 8274 . G . . END=8276 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20_10037292_10066351 8277 . G . . END=8277 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1134 +20_10037292_10066351 8278 . C . . END=8279 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20_10037292_10066351 8280 . A . . END=8281 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1159 +20_10037292_10066351 8282 . G . . END=8283 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1186 +20_10037292_10066351 8284 . T . . END=8284 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1228 +20_10037292_10066351 8285 . T . . END=8285 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1148 +20_10037292_10066351 8286 . T . . END=8294 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20_10037292_10066351 8295 . G . . END=8295 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1093 +20_10037292_10066351 8296 . G . . END=8297 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,101,1115 +20_10037292_10066351 8298 . C . . END=8298 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1125 +20_10037292_10066351 8299 . T . . END=8299 GT:DP:GQ:MIN_DP:PL 0/0:38:49:38:0,49,1079 +20_10037292_10066351 8300 . C . . END=8300 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,111,1665 +20_10037292_10066351 8301 . T . . END=8302 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1122 +20_10037292_10066351 8303 . A . . END=8304 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20_10037292_10066351 8305 . C . . END=8305 GT:DP:GQ:MIN_DP:PL 0/0:39:67:39:0,67,1110 +20_10037292_10066351 8306 . A . . END=8306 GT:DP:GQ:MIN_DP:PL 0/0:39:75:39:0,75,1116 +20_10037292_10066351 8307 . C . . END=8307 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,103,1201 +20_10037292_10066351 8308 . C . . END=8308 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1183 +20_10037292_10066351 8309 . A . . END=8309 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20_10037292_10066351 8310 . G . . END=8310 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1182 +20_10037292_10066351 8311 . C . . END=8317 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,100,1175 +20_10037292_10066351 8318 . T . . END=8318 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1226 +20_10037292_10066351 8319 . A . . END=8325 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1485 +20_10037292_10066351 8326 . G . . END=8326 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1124 +20_10037292_10066351 8327 . A . . END=8328 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 8329 . T . . END=8335 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20_10037292_10066351 8336 . G . . END=8336 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1092 +20_10037292_10066351 8337 . A . . END=8338 GT:DP:GQ:MIN_DP:PL 0/0:38:96:37:0,96,1122 +20_10037292_10066351 8339 . T . . END=8339 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1114 +20_10037292_10066351 8340 . T . . END=8343 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 8344 . A . . END=8345 GT:DP:GQ:MIN_DP:PL 0/0:34:87:33:0,87,982 +20_10037292_10066351 8346 . A . . END=8349 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1011 +20_10037292_10066351 8350 . G C, 348.64 . BaseQRankSum=-1.608;DP=31;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=111600,31;ReadPosRankSum=-0.187 GT:AD:DP:GQ:PL:SB 0/1:16,14,0:30:99:356,0,430,405,472,877:9,7,5,9 +20_10037292_10066351 8351 . A . . END=8352 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,1003 +20_10037292_10066351 8353 . T . . END=8353 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 8354 . T . . END=8354 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,889 +20_10037292_10066351 8355 . C . . END=8357 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20_10037292_10066351 8358 . A . . END=8358 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,958 +20_10037292_10066351 8359 . A . . END=8360 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 8361 . A . . END=8361 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1111 +20_10037292_10066351 8362 . C . . END=8363 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1208 +20_10037292_10066351 8364 . G . . END=8365 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1092 +20_10037292_10066351 8366 . A . . END=8366 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1109 +20_10037292_10066351 8367 . T . . END=8367 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1118 +20_10037292_10066351 8368 . T . . END=8373 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,100,1084 +20_10037292_10066351 8374 . G . . END=8374 GT:DP:GQ:MIN_DP:PL 0/0:39:74:39:0,74,1095 +20_10037292_10066351 8375 . G . . END=8375 GT:DP:GQ:MIN_DP:PL 0/0:39:94:39:0,94,1205 +20_10037292_10066351 8376 . G . . END=8376 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20_10037292_10066351 8377 . T . . END=8377 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1104 +20_10037292_10066351 8378 . G . . END=8378 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20_10037292_10066351 8379 . G . . END=8379 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1095 +20_10037292_10066351 8380 . A . . END=8391 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,107,1152 +20_10037292_10066351 8392 . T . . END=8392 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1195 +20_10037292_10066351 8393 . G . . END=8411 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1139 +20_10037292_10066351 8412 . T . . END=8414 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20_10037292_10066351 8415 . A . . END=8426 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20_10037292_10066351 8427 . T . . END=8427 GT:DP:GQ:MIN_DP:PL 0/0:35:71:35:0,71,973 +20_10037292_10066351 8428 . C . . END=8431 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20_10037292_10066351 8432 . C . . END=8432 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1129 +20_10037292_10066351 8433 . T . . END=8435 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1159 +20_10037292_10066351 8436 . C . . END=8436 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1097 +20_10037292_10066351 8437 . T . . END=8446 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1530 +20_10037292_10066351 8447 . T . . END=8447 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1078 +20_10037292_10066351 8448 . C . . END=8449 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20_10037292_10066351 8450 . C . . END=8450 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1098 +20_10037292_10066351 8451 . A . . END=8454 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20_10037292_10066351 8455 . T . . END=8458 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20_10037292_10066351 8459 . G . . END=8459 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1035 +20_10037292_10066351 8460 . C . . END=8468 GT:DP:GQ:MIN_DP:PL 0/0:35:93:32:0,93,1018 +20_10037292_10066351 8469 . T . . END=8469 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 8470 . C . . END=8472 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1098 +20_10037292_10066351 8473 . T . . END=8475 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20_10037292_10066351 8476 . A . . END=8476 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1027 +20_10037292_10066351 8477 . C . . END=8479 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1039 +20_10037292_10066351 8480 . G . . END=8482 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 8483 . T . . END=8484 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,1037 +20_10037292_10066351 8485 . T . . END=8485 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 8486 . A . . END=8491 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20_10037292_10066351 8492 . T . . END=8492 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1010 +20_10037292_10066351 8493 . G . . END=8495 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 8496 . A . . END=8497 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,996 +20_10037292_10066351 8498 . C . . END=8498 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,962 +20_10037292_10066351 8499 . T . . END=8499 GT:DP:GQ:MIN_DP:PL 0/0:32:58:32:0,58,904 +20_10037292_10066351 8500 . C . . END=8500 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,901 +20_10037292_10066351 8501 . C . . END=8503 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20_10037292_10066351 8504 . C . . END=8508 GT:DP:GQ:MIN_DP:PL 0/0:34:81:32:0,81,1215 +20_10037292_10066351 8509 . G . . END=8511 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,936 +20_10037292_10066351 8512 . A . . END=8513 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20_10037292_10066351 8514 . A . . END=8514 GT:DP:GQ:MIN_DP:PL 0/0:30:62:30:0,62,808 +20_10037292_10066351 8515 . A . . END=8519 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 +20_10037292_10066351 8520 . G . . END=8520 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,913 +20_10037292_10066351 8521 . C . . END=8521 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20_10037292_10066351 8522 . A . . END=8529 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1014 +20_10037292_10066351 8530 . C . . END=8530 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,1017 +20_10037292_10066351 8531 . C . . END=8531 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1077 +20_10037292_10066351 8532 . A . . END=8532 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,1093 +20_10037292_10066351 8533 . C . . END=8536 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,111,1179 +20_10037292_10066351 8537 . A . . END=8537 GT:DP:GQ:MIN_DP:PL 0/0:40:94:40:0,94,1186 +20_10037292_10066351 8538 . A . . END=8542 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,102,1184 +20_10037292_10066351 8543 . C . . END=8543 GT:DP:GQ:MIN_DP:PL 0/0:42:76:42:0,76,1186 +20_10037292_10066351 8544 . A . . END=8576 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,99,1160 +20_10037292_10066351 8577 . G . . END=8577 GT:DP:GQ:MIN_DP:PL 0/0:38:95:38:0,95,1108 +20_10037292_10066351 8578 . T . . END=8582 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20_10037292_10066351 8583 . T . . END=8583 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1108 +20_10037292_10066351 8584 . T . . END=8584 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 8585 . T . . END=8585 GT:DP:GQ:MIN_DP:PL 0/0:37:84:37:0,84,1034 +20_10037292_10066351 8586 . C . . END=8588 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1041 +20_10037292_10066351 8589 . A . . END=8597 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,100,1141 +20_10037292_10066351 8598 . T . . END=8598 GT:DP:GQ:MIN_DP:PL 0/0:39:94:39:0,94,1217 +20_10037292_10066351 8599 . G . . END=8644 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,99,1152 +20_10037292_10066351 8645 . T . . END=8645 GT:DP:GQ:MIN_DP:PL 0/0:44:97:44:0,97,1160 +20_10037292_10066351 8646 . C . . END=8670 GT:DP:GQ:MIN_DP:PL 0/0:47:99:45:0,106,1261 +20_10037292_10066351 8671 . A . . END=8671 GT:DP:GQ:MIN_DP:PL 0/0:46:94:46:0,94,1264 +20_10037292_10066351 8672 . C . . END=8710 GT:DP:GQ:MIN_DP:PL 0/0:45:99:41:0,102,1234 +20_10037292_10066351 8711 . C . . END=8711 GT:DP:GQ:MIN_DP:PL 0/0:45:98:45:0,98,1210 +20_10037292_10066351 8712 . C . . END=8719 GT:DP:GQ:MIN_DP:PL 0/0:47:99:45:0,120,1800 +20_10037292_10066351 8720 . C . . END=8720 GT:DP:GQ:MIN_DP:PL 0/0:47:95:47:0,95,1205 +20_10037292_10066351 8721 . A . . END=8758 GT:DP:GQ:MIN_DP:PL 0/0:50:99:47:0,101,1253 +20_10037292_10066351 8759 . C . . END=8759 GT:DP:GQ:MIN_DP:PL 0/0:51:98:51:0,98,1318 +20_10037292_10066351 8760 . T . . END=8772 GT:DP:GQ:MIN_DP:PL 0/0:50:99:48:0,112,1331 +20_10037292_10066351 8773 . G . . END=8773 GT:DP:GQ:MIN_DP:PL 0/0:47:90:47:0,90,1345 +20_10037292_10066351 8774 . G . . END=8798 GT:DP:GQ:MIN_DP:PL 0/0:47:99:46:0,100,1267 +20_10037292_10066351 8799 . T . . END=8799 GT:DP:GQ:MIN_DP:PL 0/0:46:91:46:0,91,1314 +20_10037292_10066351 8800 . C . . END=8816 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,107,1273 +20_10037292_10066351 8817 . T . . END=8817 GT:DP:GQ:MIN_DP:PL 0/0:43:9:43:0,9,868 +20_10037292_10066351 8818 . T . . END=8818 GT:DP:GQ:MIN_DP:PL 0/0:43:69:43:0,69,1016 +20_10037292_10066351 8819 . A . . END=8823 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,103,1274 +20_10037292_10066351 8824 . T . . END=8824 GT:DP:GQ:MIN_DP:PL 0/0:41:43:41:0,43,1059 +20_10037292_10066351 8825 . G . . END=8825 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,114,1710 +20_10037292_10066351 8826 . C . . END=8826 GT:DP:GQ:MIN_DP:PL 0/0:42:80:42:0,80,1084 +20_10037292_10066351 8827 . T . . END=8827 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1150 +20_10037292_10066351 8828 . G . . END=8834 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,105,1575 +20_10037292_10066351 8835 . C . . END=8835 GT:DP:GQ:MIN_DP:PL 0/0:43:66:43:0,66,1018 +20_10037292_10066351 8836 . A . . END=8845 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,111,1238 +20_10037292_10066351 8846 . G . . END=8846 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1131 +20_10037292_10066351 8847 . G . . END=8852 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1077 +20_10037292_10066351 8853 . G . . END=8853 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1079 +20_10037292_10066351 8854 . A . . END=8859 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1103 +20_10037292_10066351 8860 . A . . END=8862 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20_10037292_10066351 8863 . G . . END=8863 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,988 +20_10037292_10066351 8864 . G . . END=8864 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,955 +20_10037292_10066351 8865 . G . . END=8865 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1170 +20_10037292_10066351 8866 . A . . END=8866 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1215 +20_10037292_10066351 8867 . A . . END=8870 GT:DP:GQ:MIN_DP:PL 0/0:37:70:35:0,70,1040 +20_10037292_10066351 8871 . G . . END=8871 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,952 +20_10037292_10066351 8872 . A . . END=8872 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,1019 +20_10037292_10066351 8873 . A . . END=8873 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20_10037292_10066351 8874 . A . . END=8875 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,1009 +20_10037292_10066351 8876 . A . . END=8876 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1170 +20_10037292_10066351 8877 . A . . END=8878 GT:DP:GQ:MIN_DP:PL 0/0:35:81:34:0,81,944 +20_10037292_10066351 8879 . A . . END=8880 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20_10037292_10066351 8881 . A . . END=8882 GT:DP:GQ:MIN_DP:PL 0/0:34:81:34:0,81,1215 +20_10037292_10066351 8883 . A . . END=8883 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,1170 +20_10037292_10066351 8884 . G . . END=8884 GT:DP:GQ:MIN_DP:PL 0/0:28:0:28:0,0,701 +20_10037292_10066351 8885 . A . . END=8885 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,929 +20_10037292_10066351 8886 . AAGAAAGAAAG A, 790.03 . DP=25;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=90000,25 GT:AD:DP:GQ:PL:SB 1/1:0,18,0:18:55:804,55,0,804,55,804:0,0,15,3 +20_10037292_10066351 8897 . A . . END=8897 GT:DP:GQ:MIN_DP:PL 0/0:33:29:33:0,29,882 +20_10037292_10066351 8898 . G . . END=8898 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,664 +20_10037292_10066351 8899 . A . . END=8899 GT:DP:GQ:MIN_DP:PL 0/0:31:58:31:0,58,870 +20_10037292_10066351 8900 . A . . END=8900 GT:DP:GQ:MIN_DP:PL 0/0:29:53:29:0,53,859 +20_10037292_10066351 8901 . A . . END=8901 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,1125 +20_10037292_10066351 8902 . G . . END=8902 GT:DP:GQ:MIN_DP:PL 0/0:27:50:27:0,50,742 +20_10037292_10066351 8903 . A . . END=8903 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,1080 +20_10037292_10066351 8904 . A . . END=8904 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,653 +20_10037292_10066351 8905 . A . . END=8905 GT:DP:GQ:MIN_DP:PL 0/0:30:55:30:0,55,917 +20_10037292_10066351 8906 . G . . END=8906 GT:DP:GQ:MIN_DP:PL 0/0:30:0:30:0,0,592 +20_10037292_10066351 8907 . A . . END=8907 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20_10037292_10066351 8908 . G . . END=8908 GT:DP:GQ:MIN_DP:PL 0/0:29:56:29:0,56,775 +20_10037292_10066351 8909 . A . . END=8911 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20_10037292_10066351 8912 . G . . END=8912 GT:DP:GQ:MIN_DP:PL 0/0:31:45:31:0,45,778 +20_10037292_10066351 8913 . A . . END=8913 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 8914 . G . . END=8914 GT:DP:GQ:MIN_DP:PL 0/0:32:39:32:0,39,789 +20_10037292_10066351 8915 . A . . END=8915 GT:DP:GQ:MIN_DP:PL 0/0:32:55:32:0,55,861 +20_10037292_10066351 8916 . A . . END=8916 GT:DP:GQ:MIN_DP:PL 0/0:33:73:33:0,73,936 +20_10037292_10066351 8917 . A . . END=8917 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20_10037292_10066351 8918 . G . . END=8918 GT:DP:GQ:MIN_DP:PL 0/0:32:41:32:0,41,862 +20_10037292_10066351 8919 . A . . END=8919 GT:DP:GQ:MIN_DP:PL 0/0:32:68:32:0,68,852 +20_10037292_10066351 8920 . A . . END=8921 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20_10037292_10066351 8922 . G . . END=8922 GT:DP:GQ:MIN_DP:PL 0/0:32:64:32:0,64,813 +20_10037292_10066351 8923 . A . . END=8923 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20_10037292_10066351 8924 . G . . END=8924 GT:DP:GQ:MIN_DP:PL 0/0:32:24:32:0,24,782 +20_10037292_10066351 8925 . G . . END=8925 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,854 +20_10037292_10066351 8926 . A . . END=8927 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20_10037292_10066351 8928 . A . . END=8928 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,978 +20_10037292_10066351 8929 . G . . END=8929 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,916 +20_10037292_10066351 8930 . A . . END=8930 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,971 +20_10037292_10066351 8931 . G . . END=8931 GT:DP:GQ:MIN_DP:PL 0/0:34:55:34:0,55,861 +20_10037292_10066351 8932 . A . . END=8932 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20_10037292_10066351 8933 . G . . END=8933 GT:DP:GQ:MIN_DP:PL 0/0:34:55:34:0,55,871 +20_10037292_10066351 8934 . A . . END=8934 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20_10037292_10066351 8935 . A . . END=8935 GT:DP:GQ:MIN_DP:PL 0/0:35:76:35:0,76,929 +20_10037292_10066351 8936 . A . . END=8936 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 8937 . G . . END=8937 GT:DP:GQ:MIN_DP:PL 0/0:34:41:34:0,41,873 +20_10037292_10066351 8938 . A . . END=8942 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1260 +20_10037292_10066351 8943 . G . . END=8943 GT:DP:GQ:MIN_DP:PL 0/0:34:56:34:0,56,859 +20_10037292_10066351 8944 . A . . END=8944 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +20_10037292_10066351 8945 . G . . END=8945 GT:DP:GQ:MIN_DP:PL 0/0:35:76:35:0,76,999 +20_10037292_10066351 8946 . A . . END=8947 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20_10037292_10066351 8948 . G . . END=8948 GT:DP:GQ:MIN_DP:PL 0/0:35:70:35:0,70,915 +20_10037292_10066351 8949 . G . . END=8949 GT:DP:GQ:MIN_DP:PL 0/0:35:57:35:0,57,843 +20_10037292_10066351 8950 . A . . END=8950 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20_10037292_10066351 8951 . A . . END=8951 GT:DP:GQ:MIN_DP:PL 0/0:33:77:33:0,77,925 +20_10037292_10066351 8952 . A . . END=8952 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +20_10037292_10066351 8953 . G . . END=8953 GT:DP:GQ:MIN_DP:PL 0/0:33:59:33:0,59,854 +20_10037292_10066351 8954 . A . . END=8954 GT:DP:GQ:MIN_DP:PL 0/0:34:83:34:0,83,996 +20_10037292_10066351 8955 . G . . END=8955 GT:DP:GQ:MIN_DP:PL 0/0:34:65:34:0,65,855 +20_10037292_10066351 8956 . A . . END=8958 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20_10037292_10066351 8959 . G . . END=8959 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,870 +20_10037292_10066351 8960 . A . . END=8963 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,893 +20_10037292_10066351 8964 . A . . END=8964 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 8965 . G . . END=8965 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,921 +20_10037292_10066351 8966 . A . . END=8966 GT:DP:GQ:MIN_DP:PL 0/0:33:79:33:0,79,885 +20_10037292_10066351 8967 . A . . END=8967 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20_10037292_10066351 8968 . G . . END=8969 GT:DP:GQ:MIN_DP:PL 0/0:31:75:30:0,75,807 +20_10037292_10066351 8970 . A . . END=8975 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20_10037292_10066351 8976 . A . . END=8977 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,807 +20_10037292_10066351 8978 . A . . END=8983 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,904 +20_10037292_10066351 8984 . A . . END=8986 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 8987 . G . . END=8987 GT:DP:GQ:MIN_DP:PL 0/0:32:65:32:0,65,811 +20_10037292_10066351 8988 . A . . END=8988 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,954 +20_10037292_10066351 8989 . G . . END=8989 GT:DP:GQ:MIN_DP:PL 0/0:33:72:33:0,72,832 +20_10037292_10066351 8990 . A . . END=8992 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 8993 . G . . END=8994 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 8995 . G . . END=8995 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,964 +20_10037292_10066351 8996 . A . . END=8996 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 8997 . G . . END=8998 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,927 +20_10037292_10066351 8999 . G . . END=8999 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,935 +20_10037292_10066351 9000 . A . . END=9001 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 9002 . A . . END=9011 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1019 +20_10037292_10066351 9012 . G . . END=9012 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 9013 . A . . END=9013 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20_10037292_10066351 9014 . A . . END=9014 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1063 +20_10037292_10066351 9015 . G . . END=9018 GT:DP:GQ:MIN_DP:PL 0/0:38:90:37:0,90,991 +20_10037292_10066351 9019 . G . . END=9019 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,933 +20_10037292_10066351 9020 . A . . END=9022 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1066 +20_10037292_10066351 9023 . A . . END=9023 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,965 +20_10037292_10066351 9024 . A . . END=9024 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20_10037292_10066351 9025 . T . . END=9025 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,801 +20_10037292_10066351 9026 . G . . END=9030 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,105,1575 +20_10037292_10066351 9031 . G . . END=9031 GT:DP:GQ:MIN_DP:PL 0/0:39:66:39:0,66,992 +20_10037292_10066351 9032 . A . . END=9032 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +20_10037292_10066351 9033 . G . . END=9033 GT:DP:GQ:MIN_DP:PL 0/0:40:59:40:0,59,1001 +20_10037292_10066351 9034 . G . . END=9034 GT:DP:GQ:MIN_DP:PL 0/0:40:55:40:0,55,938 +20_10037292_10066351 9035 . A . . END=9036 GT:DP:GQ:MIN_DP:PL 0/0:40:84:39:0,84,1028 +20_10037292_10066351 9037 . G . . END=9037 GT:DP:GQ:MIN_DP:PL 0/0:38:13:38:0,13,819 +20_10037292_10066351 9038 . G . . END=9038 GT:DP:GQ:MIN_DP:PL 0/0:36:66:36:0,66,886 +20_10037292_10066351 9039 . A . . END=9044 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,101,1102 +20_10037292_10066351 9045 . G . . END=9045 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1032 +20_10037292_10066351 9046 . A . . END=9046 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20_10037292_10066351 9047 . G . . END=9047 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,992 +20_10037292_10066351 9048 . A . . END=9048 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20_10037292_10066351 9049 . C . . END=9049 GT:DP:GQ:MIN_DP:PL 0/0:35:75:35:0,75,843 +20_10037292_10066351 9050 . A . . END=9056 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20_10037292_10066351 9057 . A . . END=9057 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20_10037292_10066351 9058 . A . . END=9058 GT:DP:GQ:MIN_DP:PL 0/0:36:64:36:0,64,986 +20_10037292_10066351 9059 . G . . END=9060 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20_10037292_10066351 9061 . A . . END=9070 GT:DP:GQ:MIN_DP:PL 0/0:34:84:33:0,84,1260 +20_10037292_10066351 9071 . A . . END=9071 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20_10037292_10066351 9072 . G . . END=9072 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1060 +20_10037292_10066351 9073 . A . . END=9073 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20_10037292_10066351 9074 . A . . END=9074 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 9075 . A . . END=9077 GT:DP:GQ:MIN_DP:PL 0/0:37:93:35:0,93,1395 +20_10037292_10066351 9078 . A . . END=9079 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,986 +20_10037292_10066351 9080 . A . . END=9081 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 9082 . A . . END=9082 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,984 +20_10037292_10066351 9083 . G . . END=9085 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 9086 . G . . END=9086 GT:DP:GQ:MIN_DP:PL 0/0:33:80:33:0,80,954 +20_10037292_10066351 9087 . A . . END=9087 GT:DP:GQ:MIN_DP:PL 0/0:33:72:33:0,72,899 +20_10037292_10066351 9088 . A . . END=9088 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,992 +20_10037292_10066351 9089 . G . . END=9096 GT:DP:GQ:MIN_DP:PL 0/0:35:90:32:0,90,1350 +20_10037292_10066351 9097 . A . . END=9097 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,971 +20_10037292_10066351 9098 . G . . END=9099 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 9100 . A . . END=9100 GT:DP:GQ:MIN_DP:PL 0/0:33:73:33:0,73,999 +20_10037292_10066351 9101 . A . . END=9103 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20_10037292_10066351 9104 . A . . END=9107 GT:DP:GQ:MIN_DP:PL 0/0:32:83:32:0,83,943 +20_10037292_10066351 9108 . A . . END=9110 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20_10037292_10066351 9111 . A . . END=9111 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,972 +20_10037292_10066351 9112 . A . . END=9117 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 9118 . A . . END=9133 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1099 +20_10037292_10066351 9134 . A . . END=9134 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1061 +20_10037292_10066351 9135 . A . . END=9135 GT:DP:GQ:MIN_DP:PL 0/0:36:82:36:0,82,1064 +20_10037292_10066351 9136 . A . . END=9136 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 9137 . C . . END=9137 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1079 +20_10037292_10066351 9138 . C . . END=9140 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20_10037292_10066351 9141 . A . . END=9141 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,1117 +20_10037292_10066351 9142 . A . . END=9142 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1124 +20_10037292_10066351 9143 . A . . END=9143 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20_10037292_10066351 9144 . A . . END=9144 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1143 +20_10037292_10066351 9145 . G . . END=9152 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1142 +20_10037292_10066351 9153 . T . . END=9153 GT:DP:GQ:MIN_DP:PL 0/0:43:98:43:0,98,1295 +20_10037292_10066351 9154 . A . . END=9176 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,102,1254 +20_10037292_10066351 9177 . T . . END=9177 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1212 +20_10037292_10066351 9178 . G . . END=9180 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,107,1119 +20_10037292_10066351 9181 . G . . END=9181 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1056 +20_10037292_10066351 9182 . G . . END=9184 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,117,1197 +20_10037292_10066351 9185 . T . . END=9185 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1152 +20_10037292_10066351 9186 . T . . END=9186 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,117,1209 +20_10037292_10066351 9187 . T . . END=9187 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1113 +20_10037292_10066351 9188 . C . . END=9193 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,105,1208 +20_10037292_10066351 9194 . A . . END=9194 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1134 +20_10037292_10066351 9195 . C . . END=9201 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,102,1314 +20_10037292_10066351 9202 . T . . END=9202 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1233 +20_10037292_10066351 9203 . C . . END=9246 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,114,1272 +20_10037292_10066351 9247 . T . . END=9247 GT:DP:GQ:MIN_DP:PL 0/0:44:90:44:0,90,1239 +20_10037292_10066351 9248 . T . . END=9263 GT:DP:GQ:MIN_DP:PL 0/0:45:99:43:0,117,1755 +20_10037292_10066351 9264 . A . . END=9264 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1293 +20_10037292_10066351 9265 . A . . END=9280 GT:DP:GQ:MIN_DP:PL 0/0:44:99:41:0,106,1208 +20_10037292_10066351 9281 . T . . END=9281 GT:DP:GQ:MIN_DP:PL 0/0:45:89:45:0,89,1396 +20_10037292_10066351 9282 . G . . END=9301 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,99,1485 +20_10037292_10066351 9302 . A . . END=9306 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20_10037292_10066351 9307 . A . . END=9309 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20_10037292_10066351 9310 . C . . END=9314 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1141 +20_10037292_10066351 9315 . G . . END=9360 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,102,1243 +20_10037292_10066351 9361 . G . . END=9361 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1076 +20_10037292_10066351 9362 . C . . END=9369 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,105,1575 +20_10037292_10066351 9370 . A . . END=9370 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1042 +20_10037292_10066351 9371 . C . . END=9374 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20_10037292_10066351 9375 . A . . END=9375 GT:DP:GQ:MIN_DP:PL 0/0:37:84:37:0,84,1118 +20_10037292_10066351 9376 . C . . END=9376 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 9377 . A . . END=9382 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1117 +20_10037292_10066351 9383 . C . . END=9385 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 9386 . A . . END=9386 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1091 +20_10037292_10066351 9387 . T . . END=9400 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1158 +20_10037292_10066351 9401 . T . . END=9401 GT:DP:GQ:MIN_DP:PL 0/0:36:73:36:0,73,1066 +20_10037292_10066351 9402 . C . . END=9408 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1143 +20_10037292_10066351 9409 . C . . END=9409 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1193 +20_10037292_10066351 9410 . C . . END=9412 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,111,1665 +20_10037292_10066351 9413 . C . . END=9413 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1240 +20_10037292_10066351 9414 . C . . END=9463 GT:DP:GQ:MIN_DP:PL 0/0:44:99:42:0,104,1316 +20_10037292_10066351 9464 . A . . END=9464 GT:DP:GQ:MIN_DP:PL 0/0:42:79:42:0,79,1237 +20_10037292_10066351 9465 . A . . END=9468 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1530 +20_10037292_10066351 9469 . T . . END=9469 GT:DP:GQ:MIN_DP:PL 0/0:39:95:39:0,95,1174 +20_10037292_10066351 9470 . C . . END=9478 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1485 +20_10037292_10066351 9479 . A . . END=9480 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 9481 . G . . END=9484 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20_10037292_10066351 9485 . A . . END=9486 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1037 +20_10037292_10066351 9487 . C . . END=9492 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1485 +20_10037292_10066351 9493 . G . . END=9493 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1162 +20_10037292_10066351 9494 . A . . END=9496 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20_10037292_10066351 9497 . T . . END=9497 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1105 +20_10037292_10066351 9498 . C . . END=9513 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1169 +20_10037292_10066351 9514 . C . . END=9514 GT:DP:GQ:MIN_DP:PL 0/0:39:91:39:0,91,1203 +20_10037292_10066351 9515 . C . . END=9533 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,105,1101 +20_10037292_10066351 9534 . A . . END=9534 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,960 +20_10037292_10066351 9535 . A . . END=9535 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 9536 . T C, 936.06 . DP=32;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=115200,32 GT:AD:DP:GQ:PL:SB 1/1:0,32,0:32:95:950,95,0,950,95,950:0,0,16,16 +20_10037292_10066351 9537 . T . . END=9537 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,993 +20_10037292_10066351 9538 . C . . END=9538 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 9539 . A . . END=9540 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,974 +20_10037292_10066351 9541 . C . . END=9544 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20_10037292_10066351 9545 . A . . END=9545 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1085 +20_10037292_10066351 9546 . T . . END=9546 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1088 +20_10037292_10066351 9547 . T . . END=9554 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20_10037292_10066351 9555 . A . . END=9565 GT:DP:GQ:MIN_DP:PL 0/0:38:90:34:0,90,1110 +20_10037292_10066351 9566 . T . . END=9568 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20_10037292_10066351 9569 . C . . END=9569 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,899 +20_10037292_10066351 9570 . T . . END=9573 GT:DP:GQ:MIN_DP:PL 0/0:32:80:31:0,80,900 +20_10037292_10066351 9574 . C . . END=9574 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 9575 . C . . END=9575 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,1076 +20_10037292_10066351 9576 . T . . END=9588 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20_10037292_10066351 9589 . A . . END=9589 GT:DP:GQ:MIN_DP:PL 0/0:35:78:35:0,78,952 +20_10037292_10066351 9590 . C . . END=9597 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20_10037292_10066351 9598 . G . . END=9598 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,865 +20_10037292_10066351 9599 . C . . END=9600 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1575 +20_10037292_10066351 9601 . G . . END=9601 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,868 +20_10037292_10066351 9602 . T . . END=9665 GT:DP:GQ:MIN_DP:PL 0/0:43:99:37:0,100,1177 +20_10037292_10066351 9666 . T . . END=9666 GT:DP:GQ:MIN_DP:PL 0/0:50:88:50:0,88,1434 +20_10037292_10066351 9667 . T . . END=9848 GT:DP:GQ:MIN_DP:PL 0/0:57:99:49:0,110,1475 +20_10037292_10066351 9849 . A . . END=9849 GT:DP:GQ:MIN_DP:PL 0/0:54:78:54:0,78,1253 +20_10037292_10066351 9850 . C . . END=9859 GT:DP:GQ:MIN_DP:PL 0/0:50:99:50:0,103,1432 +20_10037292_10066351 12912 . G . . END=12915 GT:DP:GQ:MIN_DP:PL 0/0:29:75:27:0,75,1125 +20_10037292_10066351 12916 . A . . END=12919 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20_10037292_10066351 12920 . A . . END=12920 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +20_10037292_10066351 12921 . G . . END=12921 GT:DP:GQ:MIN_DP:PL 0/0:28:66:28:0,66,844 +20_10037292_10066351 12922 . A . . END=12927 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 +20_10037292_10066351 12928 . A . . END=12934 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 +20_10037292_10066351 12935 . C . . END=12939 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,875 +20_10037292_10066351 12940 . A . . END=12947 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1530 +20_10037292_10066351 12948 . G . . END=12948 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1112 +20_10037292_10066351 12949 . G . . END=12956 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20_10037292_10066351 12957 . A . . END=12957 GT:DP:GQ:MIN_DP:PL 0/0:35:78:35:0,78,990 +20_10037292_10066351 12958 . A . . END=12966 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20_10037292_10066351 12967 . C . . END=12976 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1350 +20_10037292_10066351 12977 . C . . END=12977 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,835 +20_10037292_10066351 12978 . A . . END=12981 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,952 +20_10037292_10066351 12982 . T . . END=12982 GT:DP:GQ:MIN_DP:PL 0/0:30:50:30:0,50,808 +20_10037292_10066351 12983 . T . . END=12986 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,886 +20_10037292_10066351 12987 . G . . END=12987 GT:DP:GQ:MIN_DP:PL 0/0:30:70:30:0,70,861 +20_10037292_10066351 12988 . A . . END=12992 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,967 +20_10037292_10066351 12993 . G . . END=12994 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 12995 . C . . END=12997 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 12998 . G . . END=12999 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 +20_10037292_10066351 13000 . C . . END=13000 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,971 +20_10037292_10066351 13001 . C . . END=13002 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 13003 . G . . END=13006 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20_10037292_10066351 13007 . T . . END=13011 GT:DP:GQ:MIN_DP:PL 0/0:30:80:28:0,80,804 +20_10037292_10066351 13012 . G . . END=13012 GT:DP:GQ:MIN_DP:PL 0/0:30:61:30:0,61,937 +20_10037292_10066351 13013 . A . . END=13015 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20_10037292_10066351 13016 . T . . END=13023 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,817 +20_10037292_10066351 13024 . A . . END=13024 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,915 +20_10037292_10066351 13025 . A . . END=13027 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,954 +20_10037292_10066351 13028 . G . . END=13028 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20_10037292_10066351 13029 . T . . END=13029 GT:DP:GQ:MIN_DP:PL 0/0:30:77:30:0,77,799 +20_10037292_10066351 13030 . A . . END=13033 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20_10037292_10066351 13034 . A . . END=13034 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 13035 . G . . END=13035 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 13036 . T . . END=13037 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 13038 . T . . END=13038 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,969 +20_10037292_10066351 13039 . G . . END=13042 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 13043 . T . . END=13043 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,992 +20_10037292_10066351 13044 . T . . END=13047 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,959 +20_10037292_10066351 13048 . T . . END=13062 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1011 +20_10037292_10066351 13063 . T . . END=13063 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,1061 +20_10037292_10066351 13064 . T . . END=13064 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,1049 +20_10037292_10066351 13065 . T . . END=13068 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1087 +20_10037292_10066351 13069 . C . . END=13072 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,1102 +20_10037292_10066351 13073 . G . . END=13073 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20_10037292_10066351 13074 . C . . END=13074 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1305 +20_10037292_10066351 13075 . T . . END=13077 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1350 +20_10037292_10066351 13078 . T . . END=13080 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20_10037292_10066351 13081 . C . . END=13082 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20_10037292_10066351 13083 . T . . END=13083 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,929 +20_10037292_10066351 13084 . C . . END=13084 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20_10037292_10066351 13085 . T . . END=13085 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20_10037292_10066351 13086 . C . . END=13088 GT:DP:GQ:MIN_DP:PL 0/0:37:93:35:0,93,1395 +20_10037292_10066351 13089 . A . . END=13089 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1050 +20_10037292_10066351 13090 . A . . END=13092 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1062 +20_10037292_10066351 13093 . G . . END=13094 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 13095 . T . . END=13095 GT:DP:GQ:MIN_DP:PL 0/0:34:63:34:0,63,942 +20_10037292_10066351 13096 . T . . END=13098 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1047 +20_10037292_10066351 13099 . A . . END=13102 GT:DP:GQ:MIN_DP:PL 0/0:35:93:33:0,93,1395 +20_10037292_10066351 13103 . C . . END=13103 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1050 +20_10037292_10066351 13104 . A . . END=13104 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 13105 . C . . END=13125 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1127 +20_10037292_10066351 13126 . A . . END=13126 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1081 +20_10037292_10066351 13127 . A . . END=13127 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,100,1131 +20_10037292_10066351 13128 . T . . END=13128 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1135 +20_10037292_10066351 13129 . T . . END=13159 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,107,1215 +20_10037292_10066351 13160 . T . . END=13160 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1223 +20_10037292_10066351 13161 . T . . END=13168 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,106,1237 +20_10037292_10066351 13169 . G . . END=13170 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1217 +20_10037292_10066351 13171 . C . . END=13189 GT:DP:GQ:MIN_DP:PL 0/0:46:99:43:0,99,1275 +20_10037292_10066351 13190 . A . . END=13190 GT:DP:GQ:MIN_DP:PL 0/0:45:91:45:0,91,1329 +20_10037292_10066351 13191 . G . . END=13209 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,100,1211 +20_10037292_10066351 13210 . A . . END=13210 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1107 +20_10037292_10066351 13211 . G . . END=13374 GT:DP:GQ:MIN_DP:PL 0/0:44:99:37:0,99,1159 +20_10037292_10066351 13375 . C T, 725.64 . BaseQRankSum=0.171;DP=58;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=208800,58;ReadPosRankSum=0.415 GT:AD:DP:GQ:PL:SB 0/1:28,29,0:57:99:733,0,679,816,765,1581:14,14,9,20 +20_10037292_10066351 13376 . C . . END=13438 GT:DP:GQ:MIN_DP:PL 0/0:55:99:47:0,111,1631 +20_10037292_10066351 13439 . G . . END=13439 GT:DP:GQ:MIN_DP:PL 0/0:47:90:47:0,90,1325 +20_10037292_10066351 13440 . T . . END=13455 GT:DP:GQ:MIN_DP:PL 0/0:46:99:44:0,102,1278 +20_10037292_10066351 13456 . C . . END=13456 GT:DP:GQ:MIN_DP:PL 0/0:46:94:46:0,94,1305 +20_10037292_10066351 13457 . T . . END=13487 GT:DP:GQ:MIN_DP:PL 0/0:47:99:40:0,107,1330 +20_10037292_10066351 13488 . A . . END=13488 GT:DP:GQ:MIN_DP:PL 0/0:39:72:39:0,72,1128 +20_10037292_10066351 13489 . C . . END=13489 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20_10037292_10066351 13490 . A . . END=13490 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1203 +20_10037292_10066351 13491 . G . . END=13535 GT:DP:GQ:MIN_DP:PL 0/0:43:99:38:0,99,1231 +20_10037292_10066351 13536 . T C, 583.64 . BaseQRankSum=1.634;DP=44;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=158400,44;ReadPosRankSum=-0.200 GT:AD:DP:GQ:PL:SB 0/1:21,23,0:44:99:591,0,526,654,594,1248:9,12,12,11 +20_10037292_10066351 13537 . T . . END=13687 GT:DP:GQ:MIN_DP:PL 0/0:49:99:38:0,103,1209 +20_10037292_10066351 13688 . A . . END=13688 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1191 +20_10037292_10066351 13689 . T . . END=13691 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,114,1710 +20_10037292_10066351 13692 . T . . END=13692 GT:DP:GQ:MIN_DP:PL 0/0:39:89:39:0,89,1224 +20_10037292_10066351 13693 . C . . END=13745 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,100,1220 +20_10037292_10066351 13746 . A . . END=13746 GT:DP:GQ:MIN_DP:PL 0/0:48:82:48:0,82,1344 +20_10037292_10066351 13747 . G . . END=13875 GT:DP:GQ:MIN_DP:PL 0/0:48:99:42:0,101,1231 +20_10037292_10066351 13876 . A . . END=13876 GT:DP:GQ:MIN_DP:PL 0/0:40:73:40:0,73,1107 +20_10037292_10066351 13877 . A . . END=13881 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,116,1281 +20_10037292_10066351 13882 . C . . END=13882 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1274 +20_10037292_10066351 13883 . C . . END=13893 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,101,1231 +20_10037292_10066351 13894 . T . . END=13894 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1440 +20_10037292_10066351 13895 . A . . END=13895 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1186 +20_10037292_10066351 13896 . A . . END=13897 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 13898 . T . . END=13898 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1055 +20_10037292_10066351 13899 . T . . END=13899 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1008 +20_10037292_10066351 13900 . A . . END=13900 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 13901 . T . . END=13915 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,1034 +20_10037292_10066351 13916 . T . . END=13916 GT:DP:GQ:MIN_DP:PL 0/0:42:91:42:0,91,1137 +20_10037292_10066351 13917 . A . . END=13918 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,100,1176 +20_10037292_10066351 13919 . T . . END=13919 GT:DP:GQ:MIN_DP:PL 0/0:42:94:42:0,94,1163 +20_10037292_10066351 13920 . T . . END=13941 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,103,1099 +20_10037292_10066351 13942 . T . . END=13942 GT:DP:GQ:MIN_DP:PL 0/0:42:95:42:0,95,1134 +20_10037292_10066351 13943 . A . . END=13981 GT:DP:GQ:MIN_DP:PL 0/0:45:99:41:0,102,1152 +20_10037292_10066351 13982 . G . . END=13982 GT:DP:GQ:MIN_DP:PL 0/0:45:94:45:0,94,1300 +20_10037292_10066351 13983 . A . . END=13992 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,113,1242 +20_10037292_10066351 13993 . A . . END=13993 GT:DP:GQ:MIN_DP:PL 0/0:43:93:43:0,93,1200 +20_10037292_10066351 13994 . T . . END=14022 GT:DP:GQ:MIN_DP:PL 0/0:44:99:38:0,105,1172 +20_10037292_10066351 14023 . C . . END=14023 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1103 +20_10037292_10066351 14024 . A . . END=14037 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,102,1121 +20_10037292_10066351 14038 . G . . END=14038 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1166 +20_10037292_10066351 14039 . T . . END=14042 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,101,1109 +20_10037292_10066351 14043 . A . . END=14043 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1105 +20_10037292_10066351 14044 . A . . END=14051 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,108,1620 +20_10037292_10066351 14052 . G . . END=14063 GT:DP:GQ:MIN_DP:PL 0/0:38:96:36:0,96,1440 +20_10037292_10066351 14064 . G . . END=14064 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20_10037292_10066351 14065 . T . . END=14065 GT:DP:GQ:MIN_DP:PL 0/0:35:78:35:0,78,859 +20_10037292_10066351 14066 . G . . END=14066 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20_10037292_10066351 14067 . C . . END=14075 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20_10037292_10066351 14076 . T . . END=14076 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,986 +20_10037292_10066351 14077 . T . . END=14079 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20_10037292_10066351 14080 . A . . END=14081 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1009 +20_10037292_10066351 14082 . C . . END=14084 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1530 +20_10037292_10066351 14085 . C . . END=14085 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1104 +20_10037292_10066351 14086 . C . . END=14086 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20_10037292_10066351 14087 . A . . END=14097 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20_10037292_10066351 14098 . G . . END=14099 GT:DP:GQ:MIN_DP:PL 0/0:33:80:32:0,80,872 +20_10037292_10066351 14100 . A . . END=14101 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1011 +20_10037292_10066351 14102 . T . . END=14102 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,929 +20_10037292_10066351 14103 . C . . END=14103 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 14104 . A . . END=14104 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,971 +20_10037292_10066351 14105 . C . . END=14107 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 14108 . A . . END=14108 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 14109 . C . . END=14109 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,995 +20_10037292_10066351 14110 . T . . END=14112 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20_10037292_10066351 14113 . A . . END=14118 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1043 +20_10037292_10066351 14119 . T . . END=14119 GT:DP:GQ:MIN_DP:PL 0/0:36:85:36:0,85,1054 +20_10037292_10066351 14120 . C . . END=14123 GT:DP:GQ:MIN_DP:PL 0/0:36:93:34:0,93,1395 +20_10037292_10066351 14124 . C . . END=14124 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1014 +20_10037292_10066351 14125 . A . . END=14125 GT:DP:GQ:MIN_DP:PL 0/0:34:79:34:0,79,1057 +20_10037292_10066351 14126 . G . . END=14126 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1037 +20_10037292_10066351 14127 . C . . END=14127 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,889 +20_10037292_10066351 14128 . G . . END=14130 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,102,1006 +20_10037292_10066351 14131 . C . . END=14131 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,991 +20_10037292_10066351 14132 . G . . END=14139 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,104,1190 +20_10037292_10066351 14140 . A . . END=14140 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1163 +20_10037292_10066351 14141 . C . . END=14155 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,100,1070 +20_10037292_10066351 14156 . T C, 250.64 . BaseQRankSum=3.197;DP=38;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=136800,38;ReadPosRankSum=1.134 GT:AD:DP:GQ:PL:SB 0/1:25,11,0:36:99:258,0,676,333,709,1042:16,9,4,7 +20_10037292_10066351 14157 . T . . END=14170 GT:DP:GQ:MIN_DP:PL 0/0:44:99:40:0,105,1282 +20_10037292_10066351 14171 . A . . END=14171 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1214 +20_10037292_10066351 14172 . C . . END=14192 GT:DP:GQ:MIN_DP:PL 0/0:46:99:42:0,104,1294 +20_10037292_10066351 14193 . T . . END=14193 GT:DP:GQ:MIN_DP:PL 0/0:46:92:46:0,92,1310 +20_10037292_10066351 14194 . C . . END=14268 GT:DP:GQ:MIN_DP:PL 0/0:41:99:35:0,99,1065 +20_10037292_10066351 14269 . C . . END=14272 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1092 +20_10037292_10066351 14273 . A . . END=14277 GT:DP:GQ:MIN_DP:PL 0/0:36:84:35:0,84,1260 +20_10037292_10066351 14278 . A . . END=14279 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20_10037292_10066351 14280 . C . . END=14324 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,1011 +20_10037292_10066351 14325 . T . . END=14331 GT:DP:GQ:MIN_DP:PL 0/0:37:92:35:0,92,1076 +20_10037292_10066351 14332 . C . . END=14332 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1040 +20_10037292_10066351 14333 . T . . END=14335 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 14336 . G . . END=14336 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1026 +20_10037292_10066351 14337 . A . . END=14338 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 14339 . G . . END=14344 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 14345 . A . . END=14348 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20_10037292_10066351 14349 . T . . END=14351 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 14352 . G . . END=14352 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1064 +20_10037292_10066351 14353 . T . . END=14376 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,99,1159 +20_10037292_10066351 14377 . C . . END=14377 GT:DP:GQ:MIN_DP:PL 0/0:45:92:45:0,92,1330 +20_10037292_10066351 14378 . C . . END=14402 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,110,1227 +20_10037292_10066351 14403 . G A, 145.64 . BaseQRankSum=2.632;DP=42;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=151200,42;ReadPosRankSum=0.252 GT:AD:DP:GQ:PL:SB 0/1:32,9,0:41:99:153,0,821,249,848,1097:15,17,5,4 +20_10037292_10066351 14404 . T . . END=14450 GT:DP:GQ:MIN_DP:PL 0/0:43:99:37:0,99,1183 +20_10037292_10066351 14451 . T . . END=14454 GT:DP:GQ:MIN_DP:PL 0/0:38:90:37:0,90,1350 +20_10037292_10066351 14455 . G . . END=14457 GT:DP:GQ:MIN_DP:PL 0/0:34:84:33:0,84,1260 +20_10037292_10066351 14458 . A . . END=14470 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20_10037292_10066351 14471 . C . . END=14471 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,957 +20_10037292_10066351 14472 . T . . END=14473 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1032 +20_10037292_10066351 14474 . A . . END=14492 GT:DP:GQ:MIN_DP:PL 0/0:38:99:33:0,99,1015 +20_10037292_10066351 14493 . A . . END=14493 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1013 +20_10037292_10066351 14494 . A . . END=14495 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20_10037292_10066351 14496 . T . . END=14496 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1103 +20_10037292_10066351 14497 . A . . END=14500 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20_10037292_10066351 14501 . G . . END=14502 GT:DP:GQ:MIN_DP:PL 0/0:39:83:38:0,83,1070 +20_10037292_10066351 14503 . C . . END=14513 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,99,1485 +20_10037292_10066351 14514 . A . . END=14517 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20_10037292_10066351 14518 . A . . END=14519 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1305 +20_10037292_10066351 14520 . A . . END=14523 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1395 +20_10037292_10066351 14524 . T . . END=14524 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1001 +20_10037292_10066351 14525 . T . . END=14527 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 14528 . T . . END=14528 GT:DP:GQ:MIN_DP:PL 0/0:32:67:32:0,67,931 +20_10037292_10066351 14529 . T . . END=14529 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,950 +20_10037292_10066351 14530 . T . . END=14530 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20_10037292_10066351 14531 . A . . END=14548 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,99,1108 +20_10037292_10066351 14549 . C . . END=14549 GT:DP:GQ:MIN_DP:PL 0/0:40:83:40:0,83,1170 +20_10037292_10066351 14550 . A . . END=14557 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,111,1665 +20_10037292_10066351 14558 . C . . END=14558 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1130 +20_10037292_10066351 14559 . C . . END=14609 GT:DP:GQ:MIN_DP:PL 0/0:45:99:40:0,101,1298 +20_10037292_10066351 14610 . A . . END=14610 GT:DP:GQ:MIN_DP:PL 0/0:44:92:44:0,92,1272 +20_10037292_10066351 14611 . C . . END=14683 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,99,1157 +20_10037292_10066351 14684 . T . . END=14684 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 14685 . T . . END=14685 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 14686 . A . . END=14692 GT:DP:GQ:MIN_DP:PL 0/0:37:92:35:0,92,1073 +20_10037292_10066351 14693 . T . . END=14693 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 14694 . G . . END=14699 GT:DP:GQ:MIN_DP:PL 0/0:36:93:34:0,93,1109 +20_10037292_10066351 14700 . A . . END=14700 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1091 +20_10037292_10066351 14701 . T . . END=14701 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20_10037292_10066351 14702 . T . . END=14702 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1053 +20_10037292_10066351 14703 . A . . END=14703 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 14704 . A . . END=14708 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 14709 . G . . END=14714 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20_10037292_10066351 14715 . A . . END=14715 GT:DP:GQ:MIN_DP:PL 0/0:36:86:36:0,86,1081 +20_10037292_10066351 14716 . C . . END=14717 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 14718 . T . . END=14721 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20_10037292_10066351 14722 . A . . END=14722 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1110 +20_10037292_10066351 14723 . T . . END=14725 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 14726 . A . . END=14726 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1117 +20_10037292_10066351 14727 . T . . END=14737 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1099 diff --git a/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_father.bam.g.vcf.idx b/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_father.bam.g.vcf.idx new file mode 100644 index 0000000000000000000000000000000000000000..d2265c34e88df62a3c9ec48c32cc0d1504efb40c GIT binary patch literal 731 zcmZwD&ui2`6bJCHZM|qw{4Lnp;t%i#W|B!VlWgl@-A#2tx3FeQ3qr`oWZkx#m1M1m z9t1slP{flL@mi?jQPfL42;v{$K~EmUo<+ePeCZ&97>S`d>r+2*3ZJuhNOvgDvvsG8pW&~r@d|`%Gvc^ zw!loCwYbfB%P}Kiw!$QFA~Q;)Ep^K_c*t26hnMppp(EltotyyBT+Q|-(Gjp!rn39HO1{Ab-(2Uz*btgvkN%$P+j>Y+1u^F$POCklzk@q zFbu4c&rK>@7zIWtXA9Loy{7C5+0Wf%2Lb23vTbB{Y5yPO>nqA8N9bJ2*+acdeN|Q> zyLAZoMZx;2zhSZyJYxI4SY8$i4K9M~?41`C4@5{=n zRJ%?&&&Vh4D=Y5HO!_wxSo)&u1@+vbI*r_Yr|dMaz|tpET3 literal 0 HcmV?d00001 diff --git a/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_mother.bam.g.vcf b/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_mother.bam.g.vcf new file mode 100644 index 000000000..d4e306276 --- /dev/null +++ b/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_mother.bam.g.vcf @@ -0,0 +1,1676 @@ +##fileformat=VCFv4.2 +##ALT= +##FILTER= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##GATKCommandLine= +##GVCFBlock0-1=minGQ=0(inclusive),maxGQ=1(exclusive) +##GVCFBlock1-2=minGQ=1(inclusive),maxGQ=2(exclusive) +##GVCFBlock10-11=minGQ=10(inclusive),maxGQ=11(exclusive) +##GVCFBlock11-12=minGQ=11(inclusive),maxGQ=12(exclusive) +##GVCFBlock12-13=minGQ=12(inclusive),maxGQ=13(exclusive) +##GVCFBlock13-14=minGQ=13(inclusive),maxGQ=14(exclusive) +##GVCFBlock14-15=minGQ=14(inclusive),maxGQ=15(exclusive) +##GVCFBlock15-16=minGQ=15(inclusive),maxGQ=16(exclusive) +##GVCFBlock16-17=minGQ=16(inclusive),maxGQ=17(exclusive) 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+##GVCFBlock48-49=minGQ=48(inclusive),maxGQ=49(exclusive) +##GVCFBlock49-50=minGQ=49(inclusive),maxGQ=50(exclusive) +##GVCFBlock5-6=minGQ=5(inclusive),maxGQ=6(exclusive) +##GVCFBlock50-51=minGQ=50(inclusive),maxGQ=51(exclusive) +##GVCFBlock51-52=minGQ=51(inclusive),maxGQ=52(exclusive) +##GVCFBlock52-53=minGQ=52(inclusive),maxGQ=53(exclusive) +##GVCFBlock53-54=minGQ=53(inclusive),maxGQ=54(exclusive) +##GVCFBlock54-55=minGQ=54(inclusive),maxGQ=55(exclusive) +##GVCFBlock55-56=minGQ=55(inclusive),maxGQ=56(exclusive) +##GVCFBlock56-57=minGQ=56(inclusive),maxGQ=57(exclusive) +##GVCFBlock57-58=minGQ=57(inclusive),maxGQ=58(exclusive) +##GVCFBlock58-59=minGQ=58(inclusive),maxGQ=59(exclusive) +##GVCFBlock59-60=minGQ=59(inclusive),maxGQ=60(exclusive) +##GVCFBlock6-7=minGQ=6(inclusive),maxGQ=7(exclusive) +##GVCFBlock60-70=minGQ=60(inclusive),maxGQ=70(exclusive) +##GVCFBlock7-8=minGQ=7(inclusive),maxGQ=8(exclusive) +##GVCFBlock70-80=minGQ=70(inclusive),maxGQ=80(exclusive) 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G . . END=3278 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20_10037292_10066351 3279 . A . . END=3279 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1084 +20_10037292_10066351 3280 . A . . END=3281 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 3282 . T . . END=3282 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20_10037292_10066351 3283 . T . . END=3283 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20_10037292_10066351 3284 . T . . END=3284 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1350 +20_10037292_10066351 3285 . T . . END=3293 GT:DP:GQ:MIN_DP:PL 0/0:35:81:31:0,81,1215 +20_10037292_10066351 3294 . A . . END=3302 GT:DP:GQ:MIN_DP:PL 0/0:33:90:30:0,90,970 +20_10037292_10066351 3303 . G . . END=3304 GT:DP:GQ:MIN_DP:PL 0/0:33:72:32:0,72,963 +20_10037292_10066351 3305 . C . . END=3309 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1053 +20_10037292_10066351 3310 . A . . END=3319 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1086 +20_10037292_10066351 3320 . A . . END=3320 GT:DP:GQ:MIN_DP:PL 0/0:33:68:33:0,68,959 +20_10037292_10066351 3321 . A . . END=3322 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20_10037292_10066351 3323 . G . . END=3323 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,953 +20_10037292_10066351 3324 . T . . END=3325 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1215 +20_10037292_10066351 3326 . G . . END=3326 GT:DP:GQ:MIN_DP:PL 0/0:31:60:31:0,60,873 +20_10037292_10066351 3327 . C . . END=3328 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20_10037292_10066351 3329 . T . . END=3329 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20_10037292_10066351 3330 . G . . END=3330 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,949 +20_10037292_10066351 3331 . T . . END=3332 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20_10037292_10066351 3333 . A . . END=3335 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,892 +20_10037292_10066351 3336 . T . . END=3337 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20_10037292_10066351 3338 . C . . END=3338 GT:DP:GQ:MIN_DP:PL 0/0:30:59:30:0,59,851 +20_10037292_10066351 3339 . C . . END=3339 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20_10037292_10066351 3340 . T . . END=3340 GT:DP:GQ:MIN_DP:PL 0/0:30:77:30:0,77,888 +20_10037292_10066351 3341 . A . . END=3343 GT:DP:GQ:MIN_DP:PL 0/0:30:84:28:0,84,910 +20_10037292_10066351 3344 . T . . END=3344 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,832 +20_10037292_10066351 3345 . T . . END=3348 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,891 +20_10037292_10066351 3349 . A . . END=3349 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,904 +20_10037292_10066351 3350 . G . . END=3350 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,910 +20_10037292_10066351 3351 . T . . END=3352 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,975 +20_10037292_10066351 3353 . G . . END=3354 GT:DP:GQ:MIN_DP:PL 0/0:31:72:30:0,72,846 +20_10037292_10066351 3355 . A . . END=3355 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,978 +20_10037292_10066351 3356 . T . . END=3357 GT:DP:GQ:MIN_DP:PL 0/0:31:67:31:0,67,916 +20_10037292_10066351 3358 . A . . END=3363 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1017 +20_10037292_10066351 3364 . G . . END=3364 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,947 +20_10037292_10066351 3365 . A . . END=3365 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 3366 . C . . END=3366 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,963 +20_10037292_10066351 3367 . T . . END=3369 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20_10037292_10066351 3370 . C . . END=3370 GT:DP:GQ:MIN_DP:PL 0/0:32:46:32:0,46,903 +20_10037292_10066351 3371 . A . . END=3371 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 3372 . A . . END=3372 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,905 +20_10037292_10066351 3373 . A . . END=3374 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 3375 . G . . END=3375 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,922 +20_10037292_10066351 3376 . C . . END=3376 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 3377 . A . . END=3381 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +20_10037292_10066351 3382 . A . . END=3385 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 3386 . A . . END=3387 GT:DP:GQ:MIN_DP:PL 0/0:34:84:33:0,84,964 +20_10037292_10066351 3388 . A . . END=3397 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20_10037292_10066351 3398 . A . . END=3398 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,920 +20_10037292_10066351 3399 . T . . END=3399 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 3400 . T . . END=3400 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 3401 . T . . END=3402 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20_10037292_10066351 3403 . T . . END=3403 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 3404 . C . . END=3405 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,944 +20_10037292_10066351 3406 . G . . END=3407 GT:DP:GQ:MIN_DP:PL 0/0:31:72:30:0,72,859 +20_10037292_10066351 3408 . G . . END=3408 GT:DP:GQ:MIN_DP:PL 0/0:32:62:32:0,62,890 +20_10037292_10066351 3409 . T . . END=3418 GT:DP:GQ:MIN_DP:PL 0/0:33:81:30:0,81,1215 +20_10037292_10066351 3419 . T . . END=3419 GT:DP:GQ:MIN_DP:PL 0/0:29:74:29:0,74,827 +20_10037292_10066351 3420 . T . . END=3421 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 +20_10037292_10066351 3422 . T . . END=3430 GT:DP:GQ:MIN_DP:PL 0/0:29:75:28:0,75,1125 +20_10037292_10066351 3431 . T . . END=3439 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 3440 . A . . END=3440 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,782 +20_10037292_10066351 3441 . T . . END=3442 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 3443 . T . . END=3443 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20_10037292_10066351 3444 . T . . END=3445 GT:DP:GQ:MIN_DP:PL 0/0:28:64:28:0,64,722 +20_10037292_10066351 3446 . G . . END=3446 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20_10037292_10066351 3447 . C . . END=3447 GT:DP:GQ:MIN_DP:PL 0/0:29:53:29:0,53,694 +20_10037292_10066351 3448 . T . . END=3449 GT:DP:GQ:MIN_DP:PL 0/0:31:76:30:0,76,827 +20_10037292_10066351 3450 . A . . END=3450 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 3451 . C . . END=3452 GT:DP:GQ:MIN_DP:PL 0/0:31:74:31:0,74,715 +20_10037292_10066351 3453 . T . . END=3455 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 3456 . A . . END=3456 GT:DP:GQ:MIN_DP:PL 0/0:31:23:31:0,23,766 +20_10037292_10066351 3457 . T . . END=3460 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 3461 . C . . END=3461 GT:DP:GQ:MIN_DP:PL 0/0:30:89:30:0,89,873 +20_10037292_10066351 3462 . T . . END=3462 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 3463 . G . . END=3463 GT:DP:GQ:MIN_DP:PL 0/0:31:44:31:0,44,739 +20_10037292_10066351 3464 . T . . END=3468 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 3469 . C . . END=3469 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,816 +20_10037292_10066351 3470 . T . . END=3470 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 3471 . T . . END=3478 GT:DP:GQ:MIN_DP:PL 0/0:32:75:32:0,75,1125 +20_10037292_10066351 3479 . T . . END=3479 GT:DP:GQ:MIN_DP:PL 0/0:34:36:34:0,36,906 +20_10037292_10066351 3480 . C CT, 503.03 . DP=23;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=82800,23 GT:AD:DP:GQ:PL:SB 1/1:0,18,0:18:54:517,54,0,517,54,517:0,0,7,11 +20_10037292_10066351 3481 . T . . END=3481 GT:DP:GQ:MIN_DP:PL 0/0:21:51:21:0,51,765 +20_10037292_10066351 3482 . T . . END=3482 GT:DP:GQ:MIN_DP:PL 0/0:21:54:21:0,54,810 +20_10037292_10066351 3483 . T . . END=3487 GT:DP:GQ:MIN_DP:PL 0/0:20:51:19:0,51,765 +20_10037292_10066351 3488 . T . . END=3488 GT:DP:GQ:MIN_DP:PL 0/0:19:42:19:0,42,571 +20_10037292_10066351 3489 . A . . END=3489 GT:DP:GQ:MIN_DP:PL 0/0:17:51:17:0,51,521 +20_10037292_10066351 3490 . C . . END=3490 GT:DP:GQ:MIN_DP:PL 0/0:17:35:17:0,35,431 +20_10037292_10066351 3491 . A . . END=3495 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 +20_10037292_10066351 3496 . A . . END=3498 GT:DP:GQ:MIN_DP:PL 0/0:17:51:17:0,51,473 +20_10037292_10066351 3499 . C . . END=3499 GT:DP:GQ:MIN_DP:PL 0/0:16:48:16:0,48,428 +20_10037292_10066351 3500 . G . . END=3500 GT:DP:GQ:MIN_DP:PL 0/0:16:31:16:0,31,379 +20_10037292_10066351 3501 . T . . END=3501 GT:DP:GQ:MIN_DP:PL 0/0:17:48:17:0,48,720 +20_10037292_10066351 3502 . A . . END=3503 GT:DP:GQ:MIN_DP:PL 0/0:19:54:18:0,54,550 +20_10037292_10066351 3504 . T . . END=3504 GT:DP:GQ:MIN_DP:PL 0/0:19:48:19:0,48,720 +20_10037292_10066351 3505 . A . . END=3506 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 +20_10037292_10066351 3507 . T . . END=3519 GT:DP:GQ:MIN_DP:PL 0/0:19:54:18:0,54,501 +20_10037292_10066351 3520 . AT A, 609.03 . DP=18;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=64800,18 GT:AD:DP:GQ:PL:SB 1/1:0,18,0:18:54:623,54,0,623,54,623:0,0,9,9 +20_10037292_10066351 3522 . T . . END=3525 GT:DP:GQ:MIN_DP:PL 0/0:18:54:18:0,54,550 +20_10037292_10066351 3526 . T . . END=3527 GT:DP:GQ:MIN_DP:PL 0/0:19:57:19:0,57,607 +20_10037292_10066351 3528 . T . . END=3528 GT:DP:GQ:MIN_DP:PL 0/0:19:54:19:0,54,810 +20_10037292_10066351 3529 . T A, 155.64 . BaseQRankSum=-0.544;DP=21;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=75600,21;ReadPosRankSum=-1.158 GT:AD:DP:GQ:PL:SB 0/1:12,8,0:20:99:163,0,328,199,352,551:5,7,5,3 +20_10037292_10066351 3530 . A . . END=3530 GT:DP:GQ:MIN_DP:PL 0/0:33:64:33:0,64,941 +20_10037292_10066351 3531 . A . . END=3533 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1215 +20_10037292_10066351 3534 . A . . END=3534 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,1170 +20_10037292_10066351 3535 . A . . END=3536 GT:DP:GQ:MIN_DP:PL 0/0:33:68:33:0,68,891 +20_10037292_10066351 3537 . A . . END=3546 GT:DP:GQ:MIN_DP:PL 0/0:29:72:26:0,72,1080 +20_10037292_10066351 3547 . A . . END=3547 GT:DP:GQ:MIN_DP:PL 0/0:26:56:26:0,56,731 +20_10037292_10066351 3548 . G . . END=3549 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +20_10037292_10066351 3550 . T . . END=3553 GT:DP:GQ:MIN_DP:PL 0/0:26:60:25:0,60,707 +20_10037292_10066351 3554 . A . . END=3556 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,1080 +20_10037292_10066351 3557 . A . . END=3557 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 +20_10037292_10066351 3558 . A . . END=3559 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,819 +20_10037292_10066351 3560 . G . . END=3560 GT:DP:GQ:MIN_DP:PL 0/0:27:54:27:0,54,721 +20_10037292_10066351 3561 . T . . END=3562 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +20_10037292_10066351 3563 . C . . END=3569 GT:DP:GQ:MIN_DP:PL 0/0:29:81:27:0,81,833 +20_10037292_10066351 3570 . C . . END=3570 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20_10037292_10066351 3571 . C . . END=3571 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,788 +20_10037292_10066351 3572 . A . . END=3583 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +20_10037292_10066351 3584 . T . . END=3594 GT:DP:GQ:MIN_DP:PL 0/0:28:75:26:0,75,1125 +20_10037292_10066351 3595 . C . . END=3595 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 +20_10037292_10066351 3596 . T . . END=3602 GT:DP:GQ:MIN_DP:PL 0/0:27:75:25:0,75,800 +20_10037292_10066351 3603 . T . . END=3603 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,824 +20_10037292_10066351 3604 . G . . END=3611 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,1125 +20_10037292_10066351 3612 . G . . END=3612 GT:DP:GQ:MIN_DP:PL 0/0:27:65:27:0,65,786 +20_10037292_10066351 3613 . T . . END=3613 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20_10037292_10066351 3614 . G . . END=3614 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,825 +20_10037292_10066351 3615 . C . . END=3615 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20_10037292_10066351 3616 . A . . END=3616 GT:DP:GQ:MIN_DP:PL 0/0:27:61:27:0,61,752 +20_10037292_10066351 3617 . T . . END=3617 GT:DP:GQ:MIN_DP:PL 0/0:27:47:27:0,47,774 +20_10037292_10066351 3618 . T . . END=3619 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20_10037292_10066351 3620 . C . . END=3620 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,813 +20_10037292_10066351 3621 . A . . END=3638 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 +20_10037292_10066351 3639 . G . . END=3639 GT:DP:GQ:MIN_DP:PL 0/0:28:67:28:0,67,821 +20_10037292_10066351 3640 . A . . END=3640 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20_10037292_10066351 3641 . A . . END=3645 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20_10037292_10066351 3646 . G . . END=3646 GT:DP:GQ:MIN_DP:PL 0/0:29:71:29:0,71,894 +20_10037292_10066351 3647 . C . . END=3649 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20_10037292_10066351 3650 . A . . END=3650 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,922 +20_10037292_10066351 3651 . G . . END=3653 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 3654 . T . . END=3654 GT:DP:GQ:MIN_DP:PL 0/0:29:60:29:0,60,844 +20_10037292_10066351 3655 . T . . END=3655 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20_10037292_10066351 3656 . C . . END=3658 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20_10037292_10066351 3659 . G . . END=3661 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 3662 . C . . END=3662 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,961 +20_10037292_10066351 3663 . A . . END=3666 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,911 +20_10037292_10066351 3667 . G . . END=3667 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,943 +20_10037292_10066351 3668 . A . . END=3668 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 3669 . T . . END=3669 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,897 +20_10037292_10066351 3670 . G . . END=3670 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,889 +20_10037292_10066351 3671 . T . . END=3671 GT:DP:GQ:MIN_DP:PL 0/0:32:83:32:0,83,947 +20_10037292_10066351 3672 . G . . END=3672 GT:DP:GQ:MIN_DP:PL 0/0:32:77:32:0,77,907 +20_10037292_10066351 3673 . T . . END=3676 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,869 +20_10037292_10066351 3677 . G . . END=3677 GT:DP:GQ:MIN_DP:PL 0/0:31:74:31:0,74,927 +20_10037292_10066351 3678 . G . . END=3679 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 3680 . A . . END=3680 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,912 +20_10037292_10066351 3681 . G . . END=3684 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,977 +20_10037292_10066351 3685 . T . . END=3687 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 3688 . C . . END=3688 GT:DP:GQ:MIN_DP:PL 0/0:33:72:33:0,72,891 +20_10037292_10066351 3689 . A . . END=3689 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,983 +20_10037292_10066351 3690 . G . . END=3691 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1003 +20_10037292_10066351 3692 . G . . END=3693 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1001 +20_10037292_10066351 3694 . A . . END=3694 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 3695 . G . . END=3695 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,1051 +20_10037292_10066351 3696 . A . . END=3700 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20_10037292_10066351 3701 . T . . END=3701 GT:DP:GQ:MIN_DP:PL 0/0:36:79:36:0,79,985 +20_10037292_10066351 3702 . A . . END=3702 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 3703 . T . . END=3703 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1054 +20_10037292_10066351 3704 . G . . END=3704 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20_10037292_10066351 3705 . G . . END=3706 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1107 +20_10037292_10066351 3707 . G . . END=3707 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 3708 . T . . END=3708 GT:DP:GQ:MIN_DP:PL 0/0:37:57:37:0,57,902 +20_10037292_10066351 3709 . G . . END=3715 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20_10037292_10066351 3716 . A . . END=3724 GT:DP:GQ:MIN_DP:PL 0/0:35:91:34:0,91,1056 +20_10037292_10066351 3725 . G . . END=3725 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1033 +20_10037292_10066351 3726 . A . . END=3726 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 3727 . C . . END=3727 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,925 +20_10037292_10066351 3728 . A . . END=3728 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 3729 . C . . END=3729 GT:DP:GQ:MIN_DP:PL 0/0:33:68:33:0,68,930 +20_10037292_10066351 3730 . G . . END=3732 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,947 +20_10037292_10066351 3733 . A . . END=3733 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,1034 +20_10037292_10066351 3734 . A . . END=3736 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1074 +20_10037292_10066351 3737 . A . . END=3742 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 3743 . G . . END=3743 GT:DP:GQ:MIN_DP:PL 0/0:35:83:35:0,83,1077 +20_10037292_10066351 3744 . C . . END=3744 GT:DP:GQ:MIN_DP:PL 0/0:36:59:36:0,59,1005 +20_10037292_10066351 3745 . C . . END=3750 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1058 +20_10037292_10066351 3751 . A . . END=3751 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 3752 . G . . END=3754 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20_10037292_10066351 3755 . T . . END=3755 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1030 +20_10037292_10066351 3756 . G . . END=3758 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 3759 . C . . END=3761 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20_10037292_10066351 3762 . T . . END=3762 GT:DP:GQ:MIN_DP:PL 0/0:37:70:37:0,70,1061 +20_10037292_10066351 3763 . C . . END=3763 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1147 +20_10037292_10066351 3764 . A . . END=3767 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 3768 . G . . END=3768 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1166 +20_10037292_10066351 3769 . A . . END=3770 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 3771 . A . . END=3771 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1049 +20_10037292_10066351 3772 . C . . END=3772 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20_10037292_10066351 3773 . C . . END=3773 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1116 +20_10037292_10066351 3774 . A . . END=3780 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1199 +20_10037292_10066351 3781 . C . . END=3781 GT:DP:GQ:MIN_DP:PL 0/0:37:82:37:0,82,1169 +20_10037292_10066351 3782 . T . . END=3792 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20_10037292_10066351 3793 . T . . END=3795 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 3796 . G . . END=3796 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1000 +20_10037292_10066351 3797 . G . . END=3814 GT:DP:GQ:MIN_DP:PL 0/0:35:93:32:0,93,1021 +20_10037292_10066351 3815 . A . . END=3825 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1007 +20_10037292_10066351 3826 . C . . END=3827 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20_10037292_10066351 3828 . T . . END=3848 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20_10037292_10066351 3849 . G . . END=3856 GT:DP:GQ:MIN_DP:PL 0/0:29:78:27:0,78,1170 +20_10037292_10066351 3857 . A . . END=3867 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,816 +20_10037292_10066351 3868 . T . . END=3868 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,891 +20_10037292_10066351 3869 . G . . END=3880 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 3881 . C . . END=3882 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,978 +20_10037292_10066351 3883 . G . . END=3883 GT:DP:GQ:MIN_DP:PL 0/0:30:89:30:0,89,918 +20_10037292_10066351 3884 . T . . END=3892 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,994 +20_10037292_10066351 3893 . T . . END=3893 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1072 +20_10037292_10066351 3894 . C . . END=3898 GT:DP:GQ:MIN_DP:PL 0/0:33:93:31:0,93,882 +20_10037292_10066351 3899 . G . . END=3899 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1260 +20_10037292_10066351 3900 . C . . END=3903 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 +20_10037292_10066351 3904 . T . . END=3904 GT:DP:GQ:MIN_DP:PL 0/0:36:77:36:0,77,1073 +20_10037292_10066351 3905 . C . . END=3910 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1395 +20_10037292_10066351 3911 . A . . END=3911 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 3912 . G . . END=3912 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 3913 . G . . END=3914 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 3915 . C . . END=3920 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 3921 . G . . END=3937 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1052 +20_10037292_10066351 3938 . A . . END=3938 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,1028 +20_10037292_10066351 3939 . A . . END=3942 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 3943 . T . . END=3949 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20_10037292_10066351 3950 . G . . END=3954 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1050 +20_10037292_10066351 3955 . A . . END=3955 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 3956 . A . . END=3958 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 3959 . G . . END=3959 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1117 +20_10037292_10066351 3960 . C . . END=3960 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,902 +20_10037292_10066351 3961 . G . . END=4011 GT:DP:GQ:MIN_DP:PL 0/0:40:99:34:0,102,1024 +20_10037292_10066351 4012 . C T, 1398.06 . DP=44;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=158400,44 GT:AD:DP:GQ:PL:SB 1/1:0,43,0:43:99:1412,129,0,1412,129,1412:0,0,21,22 +20_10037292_10066351 4013 . G . . END=4023 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,106,1268 +20_10037292_10066351 4024 . T . . END=4024 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1212 +20_10037292_10066351 4025 . A . . END=4057 GT:DP:GQ:MIN_DP:PL 0/0:41:99:35:0,102,1223 +20_10037292_10066351 4058 . T . . END=4058 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1090 +20_10037292_10066351 4059 . T . . END=4081 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,101,1106 +20_10037292_10066351 4082 . C . . END=4085 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +20_10037292_10066351 4086 . A . . END=4086 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 4087 . T . . END=4089 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20_10037292_10066351 4090 . A . . END=4095 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 4096 . T . . END=4114 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20_10037292_10066351 4115 . T . . END=4115 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,1024 +20_10037292_10066351 4116 . T . . END=4116 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 4117 . A . . END=4119 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20_10037292_10066351 4120 . A . . END=4121 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 4122 . G . . END=4123 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +20_10037292_10066351 4124 . G . . END=4131 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,986 +20_10037292_10066351 4132 . T . . END=4133 GT:DP:GQ:MIN_DP:PL 0/0:34:87:33:0,87,1060 +20_10037292_10066351 4134 . C . . END=4134 GT:DP:GQ:MIN_DP:PL 0/0:32:47:32:0,47,810 +20_10037292_10066351 4135 . G . . END=4136 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 4137 . A . . END=4137 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,899 +20_10037292_10066351 4138 . T . . END=4141 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 4142 . A . . END=4142 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,1001 +20_10037292_10066351 4143 . T . . END=4149 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20_10037292_10066351 4150 . T . . END=4150 GT:DP:GQ:MIN_DP:PL 0/0:33:69:33:0,69,947 +20_10037292_10066351 4151 . A . . END=4157 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20_10037292_10066351 4158 . G . . END=4158 GT:DP:GQ:MIN_DP:PL 0/0:32:24:32:0,24,861 +20_10037292_10066351 4159 . G . . END=4159 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,982 +20_10037292_10066351 4160 . A . . END=4164 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1052 +20_10037292_10066351 4165 . A . . END=4167 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 4168 . A . . END=4168 GT:DP:GQ:MIN_DP:PL 0/0:35:76:35:0,76,1046 +20_10037292_10066351 4169 . C . . END=4169 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20_10037292_10066351 4170 . G . . END=4172 GT:DP:GQ:MIN_DP:PL 0/0:38:96:37:0,96,1440 +20_10037292_10066351 4173 . C . . END=4174 GT:DP:GQ:MIN_DP:PL 0/0:37:75:37:0,75,1090 +20_10037292_10066351 4175 . T . . END=4175 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1052 +20_10037292_10066351 4176 . C . . END=4182 GT:DP:GQ:MIN_DP:PL 0/0:33:91:32:0,91,1105 +20_10037292_10066351 4183 . C . . END=4184 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1094 +20_10037292_10066351 4185 . C . . END=4185 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 4186 . T . . END=4186 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,1062 +20_10037292_10066351 4187 . T . . END=4188 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 4189 . T . . END=4189 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1038 +20_10037292_10066351 4190 . G . . END=4202 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20_10037292_10066351 4203 . A . . END=4224 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20_10037292_10066351 4225 . A . . END=4226 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20_10037292_10066351 4227 . T . . END=4234 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20_10037292_10066351 4235 . C . . END=4235 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,980 +20_10037292_10066351 4236 . A . . END=4236 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 4237 . T . . END=4241 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20_10037292_10066351 4242 . G . . END=4242 GT:DP:GQ:MIN_DP:PL 0/0:30:61:30:0,61,914 +20_10037292_10066351 4243 . G . . END=4243 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20_10037292_10066351 4244 . T . . END=4244 GT:DP:GQ:MIN_DP:PL 0/0:30:71:30:0,71,911 +20_10037292_10066351 4245 . T . . END=4245 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20_10037292_10066351 4246 . G . . END=4249 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,979 +20_10037292_10066351 4250 . G . . END=4255 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20_10037292_10066351 4256 . A . . END=4260 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 4261 . G . . END=4263 GT:DP:GQ:MIN_DP:PL 0/0:32:83:31:0,83,1010 +20_10037292_10066351 4264 . T . . END=4264 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 4265 . G . . END=4265 GT:DP:GQ:MIN_DP:PL 0/0:33:79:33:0,79,998 +20_10037292_10066351 4266 . T . . END=4269 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +20_10037292_10066351 4270 . T . . END=4271 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20_10037292_10066351 4272 . A . . END=4275 GT:DP:GQ:MIN_DP:PL 0/0:34:87:31:0,87,1305 +20_10037292_10066351 4276 . T . . END=4276 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,961 +20_10037292_10066351 4277 . C . . END=4280 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 4281 . T . . END=4281 GT:DP:GQ:MIN_DP:PL 0/0:31:74:31:0,74,942 +20_10037292_10066351 4282 . A . . END=4283 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 4284 . T . . END=4285 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 4286 . T . . END=4286 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20_10037292_10066351 4287 . C . . END=4287 GT:DP:GQ:MIN_DP:PL 0/0:33:59:33:0,59,989 +20_10037292_10066351 4288 . T . . END=4288 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +20_10037292_10066351 4289 . A . . END=4293 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 4294 . A . . END=4296 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20_10037292_10066351 4297 . A . . END=4302 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1005 +20_10037292_10066351 4303 . C . . END=4303 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 4304 . C . . END=4321 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20_10037292_10066351 4322 . G . . END=4323 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 4324 . A . . END=4329 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20_10037292_10066351 4330 . G . . END=4330 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 4331 . A . . END=4331 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,963 +20_10037292_10066351 4332 . C . . END=4332 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,1015 +20_10037292_10066351 4333 . C . . END=4333 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 4334 . C . . END=4334 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1006 +20_10037292_10066351 4335 . A . . END=4337 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1133 +20_10037292_10066351 4338 . C . . END=4338 GT:DP:GQ:MIN_DP:PL 0/0:36:56:36:0,56,988 +20_10037292_10066351 4339 . C . . END=4339 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1032 +20_10037292_10066351 4340 . T . . END=4340 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20_10037292_10066351 4341 . G . . END=4341 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1141 +20_10037292_10066351 4342 . A . . END=4343 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,105,1076 +20_10037292_10066351 4344 . C . . END=4345 GT:DP:GQ:MIN_DP:PL 0/0:37:73:36:0,73,1097 +20_10037292_10066351 4346 . G . . END=4346 GT:DP:GQ:MIN_DP:PL 0/0:36:59:36:0,59,1017 +20_10037292_10066351 4347 . T . . END=4349 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1083 +20_10037292_10066351 4350 . G . . END=4350 GT:DP:GQ:MIN_DP:PL 0/0:37:83:37:0,83,1083 +20_10037292_10066351 4351 . A . . END=4354 GT:DP:GQ:MIN_DP:PL 0/0:37:76:37:0,76,1062 +20_10037292_10066351 4355 . G . . END=4355 GT:DP:GQ:MIN_DP:PL 0/0:37:62:37:0,62,1004 +20_10037292_10066351 4356 . A . . END=4356 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1081 +20_10037292_10066351 4357 . A . . END=4357 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1116 +20_10037292_10066351 4358 . A . . END=4358 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1094 +20_10037292_10066351 4359 . A . . END=4359 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20_10037292_10066351 4360 . G . . END=4363 GT:DP:GQ:MIN_DP:PL 0/0:37:73:36:0,73,1042 +20_10037292_10066351 4364 . T . . END=4364 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1082 +20_10037292_10066351 4365 . C . . END=4366 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1056 +20_10037292_10066351 4367 . T . . END=4367 GT:DP:GQ:MIN_DP:PL 0/0:37:63:37:0,63,1057 +20_10037292_10066351 4368 . G . . END=4368 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1014 +20_10037292_10066351 4369 . G . . END=4369 GT:DP:GQ:MIN_DP:PL 0/0:37:65:37:0,65,1058 +20_10037292_10066351 4370 . A . . END=4370 GT:DP:GQ:MIN_DP:PL 0/0:37:59:37:0,59,1028 +20_10037292_10066351 4371 . G . . END=4375 GT:DP:GQ:MIN_DP:PL 0/0:37:74:36:0,74,1002 +20_10037292_10066351 4376 . T . . END=4376 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,933 +20_10037292_10066351 4377 . T . . END=4377 GT:DP:GQ:MIN_DP:PL 0/0:33:52:33:0,52,895 +20_10037292_10066351 4378 . C . . END=4378 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1050 +20_10037292_10066351 4379 . A . . END=4379 GT:DP:GQ:MIN_DP:PL 0/0:34:53:34:0,53,926 +20_10037292_10066351 4380 . C . . END=4381 GT:DP:GQ:MIN_DP:PL 0/0:34:65:33:0,65,983 +20_10037292_10066351 4382 . T . . END=4382 GT:DP:GQ:MIN_DP:PL 0/0:34:54:34:0,54,901 +20_10037292_10066351 4383 . T . . END=4386 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,976 +20_10037292_10066351 4387 . A . . END=4387 GT:DP:GQ:MIN_DP:PL 0/0:33:40:33:0,40,800 +20_10037292_10066351 4388 . C . . END=4388 GT:DP:GQ:MIN_DP:PL 0/0:33:64:33:0,64,926 +20_10037292_10066351 4389 . C . . END=4389 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,980 +20_10037292_10066351 4390 . A . . END=4390 GT:DP:GQ:MIN_DP:PL 0/0:34:54:34:0,54,915 +20_10037292_10066351 4391 . T . . END=4391 GT:DP:GQ:MIN_DP:PL 0/0:34:52:34:0,52,819 +20_10037292_10066351 4392 . C . . END=4393 GT:DP:GQ:MIN_DP:PL 0/0:33:62:32:0,62,824 +20_10037292_10066351 4394 . A . . END=4396 GT:DP:GQ:MIN_DP:PL 0/0:36:71:35:0,71,987 +20_10037292_10066351 4397 . T . . END=4398 GT:DP:GQ:MIN_DP:PL 0/0:37:61:36:0,61,1000 +20_10037292_10066351 4399 . A . . END=4399 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20_10037292_10066351 4400 . T . . END=4400 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1063 +20_10037292_10066351 4401 . T . . END=4402 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1098 +20_10037292_10066351 4403 . A . . END=4403 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1530 +20_10037292_10066351 4404 . A . . END=4404 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20_10037292_10066351 4405 . A . . END=4405 GT:DP:GQ:MIN_DP:PL 0/0:38:80:38:0,80,1107 +20_10037292_10066351 4406 . C . . END=4406 GT:DP:GQ:MIN_DP:PL 0/0:31:63:31:0,63,945 +20_10037292_10066351 4407 . A . . END=4407 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 4408 . T . . END=4408 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,1125 +20_10037292_10066351 4409 . A ATG,ATATG, 710.03 . DP=31;ExcessHet=0.0000;MLEAC=0,2,0;MLEAF=0.00,1.00,0.00;RAW_MQandDP=111600,31 GT:AD:DP:GQ:PL:SB 2/2:0,0,21,0:21:69:724,765,1112,69,87,0,767,961,90,918:0,0,10,11 +20_10037292_10066351 4410 . T . . END=4410 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1170 +20_10037292_10066351 4411 . G . . END=4411 GT:DP:GQ:MIN_DP:PL 0/0:39:0:39:0,0,531 +20_10037292_10066351 4412 . T . . END=4419 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1260 +20_10037292_10066351 4420 . T . . END=4426 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20_10037292_10066351 4427 . G . . END=4427 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,1020 +20_10037292_10066351 4428 . T . . END=4431 GT:DP:GQ:MIN_DP:PL 0/0:36:84:36:0,84,1260 +20_10037292_10066351 4432 . T . . END=4435 GT:DP:GQ:MIN_DP:PL 0/0:37:90:35:0,90,1350 +20_10037292_10066351 4436 . C . . END=4436 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,717 +20_10037292_10066351 4437 . A . . END=4437 GT:DP:GQ:MIN_DP:PL 0/0:35:34:35:0,34,781 +20_10037292_10066351 4438 . T . . END=4438 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20_10037292_10066351 4439 . G . . END=4454 GT:DP:GQ:MIN_DP:PL 0/0:33:81:31:0,81,971 +20_10037292_10066351 4455 . A . . END=4455 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 4456 . T . . END=4462 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,927 +20_10037292_10066351 4463 . A . . END=4463 GT:DP:GQ:MIN_DP:PL 0/0:31:61:31:0,61,936 +20_10037292_10066351 4464 . T . . END=4465 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20_10037292_10066351 4466 . T . . END=4473 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20_10037292_10066351 4474 . A . . END=4474 GT:DP:GQ:MIN_DP:PL 0/0:30:73:30:0,73,890 +20_10037292_10066351 4475 . G . . END=4475 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,869 +20_10037292_10066351 4476 . A . . END=4476 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,879 +20_10037292_10066351 4477 . C . . END=4484 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,860 +20_10037292_10066351 4485 . C . . END=4485 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,887 +20_10037292_10066351 4486 . A . . END=4487 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +20_10037292_10066351 4488 . G . . END=4488 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,942 +20_10037292_10066351 4489 . G . . END=4491 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20_10037292_10066351 4492 . C . . END=4492 GT:DP:GQ:MIN_DP:PL 0/0:29:56:29:0,56,779 +20_10037292_10066351 4493 . G . . END=4493 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,804 +20_10037292_10066351 4494 . C . . END=4495 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,950 +20_10037292_10066351 4496 . G . . END=4496 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,925 +20_10037292_10066351 4497 . T . . END=4499 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,963 +20_10037292_10066351 4500 . C . . END=4500 GT:DP:GQ:MIN_DP:PL 0/0:29:67:29:0,67,843 +20_10037292_10066351 4501 . A . . END=4504 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20_10037292_10066351 4505 . T . . END=4507 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,952 +20_10037292_10066351 4508 . C . . END=4508 GT:DP:GQ:MIN_DP:PL 0/0:31:62:31:0,62,892 +20_10037292_10066351 4509 . A . . END=4509 GT:DP:GQ:MIN_DP:PL 0/0:31:73:31:0,73,943 +20_10037292_10066351 4510 . G . . END=4510 GT:DP:GQ:MIN_DP:PL 0/0:31:62:31:0,62,954 +20_10037292_10066351 4511 . T . . END=4511 GT:DP:GQ:MIN_DP:PL 0/0:30:58:30:0,58,878 +20_10037292_10066351 4512 . T . . END=4512 GT:DP:GQ:MIN_DP:PL 0/0:31:60:31:0,60,895 +20_10037292_10066351 4513 . C . . END=4513 GT:DP:GQ:MIN_DP:PL 0/0:32:47:32:0,47,858 +20_10037292_10066351 4514 . A . . END=4516 GT:DP:GQ:MIN_DP:PL 0/0:32:62:32:0,62,916 +20_10037292_10066351 4517 . G . . END=4517 GT:DP:GQ:MIN_DP:PL 0/0:32:34:32:0,34,834 +20_10037292_10066351 4518 . C . . END=4518 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,949 +20_10037292_10066351 4519 . A . . END=4519 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,970 +20_10037292_10066351 4520 . A . . END=4520 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,932 +20_10037292_10066351 4521 . C . . END=4521 GT:DP:GQ:MIN_DP:PL 0/0:32:50:32:0,50,885 +20_10037292_10066351 4522 . C . . END=4522 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,1000 +20_10037292_10066351 4523 . T . . END=4524 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1056 +20_10037292_10066351 4525 . C . . END=4525 GT:DP:GQ:MIN_DP:PL 0/0:33:72:33:0,72,931 +20_10037292_10066351 4526 . A . . END=4526 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,862 +20_10037292_10066351 4527 . C . . END=4527 GT:DP:GQ:MIN_DP:PL 0/0:32:49:32:0,49,875 +20_10037292_10066351 4528 . C . . END=4530 GT:DP:GQ:MIN_DP:PL 0/0:33:65:33:0,65,945 +20_10037292_10066351 4531 . C . . END=4533 GT:DP:GQ:MIN_DP:PL 0/0:34:81:33:0,81,1215 +20_10037292_10066351 4534 . G . . END=4534 GT:DP:GQ:MIN_DP:PL 0/0:33:71:33:0,71,931 +20_10037292_10066351 4535 . G . . END=4548 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,924 +20_10037292_10066351 4549 . C . . END=4555 GT:DP:GQ:MIN_DP:PL 0/0:29:71:28:0,71,875 +20_10037292_10066351 4556 . C . . END=4564 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20_10037292_10066351 4565 . G . . END=4565 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,769 +20_10037292_10066351 4566 . A . . END=4566 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,945 +20_10037292_10066351 4567 . T . . END=4568 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 4569 . T . . END=4574 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 4575 . A . . END=4575 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1044 +20_10037292_10066351 4576 . T . . END=4582 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1077 +20_10037292_10066351 4583 . T . . END=4583 GT:DP:GQ:MIN_DP:PL 0/0:34:75:34:0,75,949 +20_10037292_10066351 4584 . A . . END=4584 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1036 +20_10037292_10066351 4585 . G . . END=4585 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,992 +20_10037292_10066351 4586 . A . . END=4586 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20_10037292_10066351 4587 . G . . END=4587 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1042 +20_10037292_10066351 4588 . A . . END=4588 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,987 +20_10037292_10066351 4589 . T . . END=4589 GT:DP:GQ:MIN_DP:PL 0/0:35:60:35:0,60,992 +20_10037292_10066351 4590 . G . . END=4590 GT:DP:GQ:MIN_DP:PL 0/0:35:79:35:0,79,1008 +20_10037292_10066351 4591 . G . . END=4591 GT:DP:GQ:MIN_DP:PL 0/0:35:56:35:0,56,909 +20_10037292_10066351 4592 . G . . END=4593 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 4594 . T . . END=4594 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,979 +20_10037292_10066351 4595 . T . . END=4596 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 4597 . C . . END=4597 GT:DP:GQ:MIN_DP:PL 0/0:34:75:34:0,75,951 +20_10037292_10066351 4598 . A . . END=4599 GT:DP:GQ:MIN_DP:PL 0/0:35:66:34:0,66,937 +20_10037292_10066351 4600 . C . . END=4600 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,937 +20_10037292_10066351 4601 . A . . END=4603 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1025 +20_10037292_10066351 4604 . T . . END=4604 GT:DP:GQ:MIN_DP:PL 0/0:34:80:34:0,80,1029 +20_10037292_10066351 4605 . T . . END=4605 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20_10037292_10066351 4606 . G . . END=4606 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,938 +20_10037292_10066351 4607 . G . . END=4607 GT:DP:GQ:MIN_DP:PL 0/0:35:73:35:0,73,966 +20_10037292_10066351 4608 . C . . END=4611 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 4612 . G . . END=4612 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,998 +20_10037292_10066351 4613 . C . . END=4616 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20_10037292_10066351 4617 . T . . END=4620 GT:DP:GQ:MIN_DP:PL 0/0:33:81:28:0,81,853 +20_10037292_10066351 4621 . G . . END=4621 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 4622 . A . . END=4626 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 4627 . C . . END=4627 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 4628 . T . . END=4630 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 4631 . C . . END=4631 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 4632 . C . . END=4632 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,940 +20_10037292_10066351 4633 . T . . END=4633 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 4634 . C . . END=4634 GT:DP:GQ:MIN_DP:PL 0/0:31:60:31:0,60,922 +20_10037292_10066351 4635 . A . . END=4635 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,947 +20_10037292_10066351 4636 . A . . END=4636 GT:DP:GQ:MIN_DP:PL 0/0:32:68:32:0,68,1000 +20_10037292_10066351 4637 . G . . END=4637 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 4638 . T . . END=4638 GT:DP:GQ:MIN_DP:PL 0/0:32:66:32:0,66,947 +20_10037292_10066351 4639 . G . . END=4639 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,968 +20_10037292_10066351 4640 . A . . END=4642 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 4643 . C . . END=4644 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +20_10037292_10066351 4645 . C . . END=4649 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,1125 +20_10037292_10066351 4650 . T . . END=4650 GT:DP:GQ:MIN_DP:PL 0/0:30:60:30:0,60,874 +20_10037292_10066351 4651 . T . . END=4654 GT:DP:GQ:MIN_DP:PL 0/0:31:72:30:0,72,1080 +20_10037292_10066351 4655 . C . . END=4655 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,1035 +20_10037292_10066351 4656 . C . . END=4666 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,759 +20_10037292_10066351 4667 . C . . END=4668 GT:DP:GQ:MIN_DP:PL 0/0:27:61:26:0,61,735 +20_10037292_10066351 4669 . G . . END=4671 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,870 +20_10037292_10066351 4672 . A . . END=4672 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,840 +20_10037292_10066351 4673 . T . . END=4674 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,854 +20_10037292_10066351 4675 . A . . END=4675 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 +20_10037292_10066351 4676 . C . . END=4677 GT:DP:GQ:MIN_DP:PL 0/0:29:70:29:0,70,802 +20_10037292_10066351 4678 . G . . END=4678 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,893 +20_10037292_10066351 4679 . G . . END=4686 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 +20_10037292_10066351 4687 . C . . END=4687 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,884 +20_10037292_10066351 4688 . A . . END=4694 GT:DP:GQ:MIN_DP:PL 0/0:30:81:27:0,81,769 +20_10037292_10066351 4695 . C . . END=4695 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,879 +20_10037292_10066351 4696 . T . . END=4697 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1215 +20_10037292_10066351 4698 . G . . END=4703 GT:DP:GQ:MIN_DP:PL 0/0:32:75:31:0,75,892 +20_10037292_10066351 4704 . A . . END=4709 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +20_10037292_10066351 4710 . T . . END=4711 GT:DP:GQ:MIN_DP:PL 0/0:30:73:30:0,73,855 +20_10037292_10066351 4712 . G . . END=4715 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20_10037292_10066351 4716 . T . . END=4716 GT:DP:GQ:MIN_DP:PL 0/0:33:55:33:0,55,937 +20_10037292_10066351 4717 . T . . END=4724 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1084 +20_10037292_10066351 4725 . C . . END=4725 GT:DP:GQ:MIN_DP:PL 0/0:36:76:36:0,76,1064 +20_10037292_10066351 4726 . A . . END=4735 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,111,1264 +20_10037292_10066351 4736 . A . . END=4736 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1108 +20_10037292_10066351 4737 . C . . END=4749 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,111,1303 +20_10037292_10066351 4750 . C . . END=4750 GT:DP:GQ:MIN_DP:PL 0/0:42:96:42:0,96,1256 +20_10037292_10066351 4751 . T . . END=4790 GT:DP:GQ:MIN_DP:PL 0/0:44:99:41:0,104,1266 +20_10037292_10066351 4791 . G . . END=4791 GT:DP:GQ:MIN_DP:PL 0/0:45:78:45:0,78,1259 +20_10037292_10066351 4792 . A . . END=4802 GT:DP:GQ:MIN_DP:PL 0/0:45:99:44:0,107,1378 +20_10037292_10066351 4803 . A . . END=4803 GT:DP:GQ:MIN_DP:PL 0/0:44:83:44:0,83,1198 +20_10037292_10066351 4804 . A . . END=4810 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,114,1431 +20_10037292_10066351 4811 . T . . END=4811 GT:DP:GQ:MIN_DP:PL 0/0:45:79:45:0,79,1233 +20_10037292_10066351 4812 . A . . END=4831 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,101,1192 +20_10037292_10066351 4832 . C . . END=4833 GT:DP:GQ:MIN_DP:PL 0/0:43:95:43:0,95,1171 +20_10037292_10066351 4834 . C . . END=4849 GT:DP:GQ:MIN_DP:PL 0/0:43:99:39:0,99,1131 +20_10037292_10066351 4850 . A . . END=4851 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1137 +20_10037292_10066351 4852 . T . . END=4854 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20_10037292_10066351 4855 . C . . END=4855 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1139 +20_10037292_10066351 4856 . T . . END=4859 GT:DP:GQ:MIN_DP:PL 0/0:35:78:35:0,78,1170 +20_10037292_10066351 4860 . T . . END=4866 GT:DP:GQ:MIN_DP:PL 0/0:36:81:34:0,81,1215 +20_10037292_10066351 4867 . T . . END=4876 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,1080 +20_10037292_10066351 4877 . G . . END=4887 GT:DP:GQ:MIN_DP:PL 0/0:26:63:25:0,63,766 +20_10037292_10066351 4888 . A . . END=4890 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20_10037292_10066351 4891 . T . . END=4893 GT:DP:GQ:MIN_DP:PL 0/0:25:66:25:0,66,990 +20_10037292_10066351 4894 . C . . END=4894 GT:DP:GQ:MIN_DP:PL 0/0:25:59:25:0,59,757 +20_10037292_10066351 4895 . T . . END=4899 GT:DP:GQ:MIN_DP:PL 0/0:25:60:24:0,60,900 +20_10037292_10066351 4900 . A . . END=4913 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,813 +20_10037292_10066351 4914 . G . . END=4914 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 +20_10037292_10066351 4915 . G . . END=4915 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +20_10037292_10066351 4916 . G . . END=4919 GT:DP:GQ:MIN_DP:PL 0/0:27:65:26:0,65,769 +20_10037292_10066351 4920 . T . . END=4924 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,1080 +20_10037292_10066351 4925 . T . . END=4925 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 +20_10037292_10066351 4926 . G . . END=4926 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20_10037292_10066351 4927 . C . . END=4927 GT:DP:GQ:MIN_DP:PL 0/0:25:28:25:0,28,665 +20_10037292_10066351 4928 . A . . END=4928 GT:DP:GQ:MIN_DP:PL 0/0:25:47:25:0,47,725 +20_10037292_10066351 4929 . A . . END=4935 GT:DP:GQ:MIN_DP:PL 0/0:25:69:24:0,69,1035 +20_10037292_10066351 4936 . T . . END=4936 GT:DP:GQ:MIN_DP:PL 0/0:24:55:24:0,55,709 +20_10037292_10066351 4937 . A . . END=4939 GT:DP:GQ:MIN_DP:PL 0/0:24:66:24:0,66,990 +20_10037292_10066351 4940 . A . . END=4940 GT:DP:GQ:MIN_DP:PL 0/0:24:56:24:0,56,727 +20_10037292_10066351 4941 . A . . END=4941 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +20_10037292_10066351 4942 . G . . END=4942 GT:DP:GQ:MIN_DP:PL 0/0:24:40:24:0,40,714 +20_10037292_10066351 4943 . A . . END=4943 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +20_10037292_10066351 4944 . A . . END=4949 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,737 +20_10037292_10066351 4950 . A . . END=4950 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +20_10037292_10066351 4951 . T . . END=4951 GT:DP:GQ:MIN_DP:PL 0/0:24:56:24:0,56,685 +20_10037292_10066351 4952 . G . . END=4952 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20_10037292_10066351 4953 . T . . END=4953 GT:DP:GQ:MIN_DP:PL 0/0:25:62:25:0,62,712 +20_10037292_10066351 4954 . C . . END=4959 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,1125 +20_10037292_10066351 4960 . A . . END=4962 GT:DP:GQ:MIN_DP:PL 0/0:29:84:28:0,84,876 +20_10037292_10066351 4963 . A . . END=4963 GT:DP:GQ:MIN_DP:PL 0/0:30:62:30:0,62,862 +20_10037292_10066351 4964 . G . . END=4966 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,955 +20_10037292_10066351 4967 . A . . END=4968 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20_10037292_10066351 4969 . G . . END=4969 GT:DP:GQ:MIN_DP:PL 0/0:30:77:30:0,77,959 +20_10037292_10066351 4970 . C . . END=4970 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20_10037292_10066351 4971 . A . . END=4971 GT:DP:GQ:MIN_DP:PL 0/0:30:44:30:0,44,863 +20_10037292_10066351 4972 . G . . END=4972 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,921 +20_10037292_10066351 4973 . A . . END=4976 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20_10037292_10066351 4977 . A . . END=4977 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,903 +20_10037292_10066351 4978 . A . . END=4989 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,860 +20_10037292_10066351 4990 . T . . END=4990 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,837 +20_10037292_10066351 4991 . C . . END=5000 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20_10037292_10066351 5001 . G . . END=5011 GT:DP:GQ:MIN_DP:PL 0/0:28:71:27:0,71,806 +20_10037292_10066351 5012 . A . . END=5012 GT:DP:GQ:MIN_DP:PL 0/0:27:65:27:0,65,831 +20_10037292_10066351 5013 . G . . END=5018 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,1125 +20_10037292_10066351 5019 . C . . END=5019 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,798 +20_10037292_10066351 5020 . A . . END=5026 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,793 +20_10037292_10066351 5027 . C T, 784.06 . DP=27;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=97200,27 GT:AD:DP:GQ:PL:SB 1/1:0,26,0:26:77:798,77,0,798,77,798:0,0,13,13 +20_10037292_10066351 5028 . C . . END=5037 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,905 +20_10037292_10066351 5038 . T . . END=5044 GT:DP:GQ:MIN_DP:PL 0/0:26:62:25:0,62,765 +20_10037292_10066351 5045 . G . . END=5045 GT:DP:GQ:MIN_DP:PL 0/0:27:58:27:0,58,808 +20_10037292_10066351 5046 . A . . END=5049 GT:DP:GQ:MIN_DP:PL 0/0:26:63:23:0,63,681 +20_10037292_10066351 5050 . T . . END=5050 GT:DP:GQ:MIN_DP:PL 0/0:24:55:24:0,55,633 +20_10037292_10066351 5051 . T . . END=5051 GT:DP:GQ:MIN_DP:PL 0/0:24:59:24:0,59,681 +20_10037292_10066351 5052 . G . . END=5055 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,722 +20_10037292_10066351 5056 . G . . END=5056 GT:DP:GQ:MIN_DP:PL 0/0:25:62:25:0,62,771 +20_10037292_10066351 5057 . A . . END=5057 GT:DP:GQ:MIN_DP:PL 0/0:25:75:25:0,75,713 +20_10037292_10066351 5058 . T . . END=5058 GT:DP:GQ:MIN_DP:PL 0/0:26:60:26:0,60,732 +20_10037292_10066351 5059 . G . . END=5059 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20_10037292_10066351 5060 . A . . END=5060 GT:DP:GQ:MIN_DP:PL 0/0:27:64:27:0,64,709 +20_10037292_10066351 5061 . A . . END=5061 GT:DP:GQ:MIN_DP:PL 0/0:28:56:28:0,56,776 +20_10037292_10066351 5062 . T . . END=5063 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,874 +20_10037292_10066351 5064 . G . . END=5064 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,871 +20_10037292_10066351 5065 . A . . END=5069 GT:DP:GQ:MIN_DP:PL 0/0:29:71:28:0,71,838 +20_10037292_10066351 5070 . C . . END=5071 GT:DP:GQ:MIN_DP:PL 0/0:28:62:28:0,62,836 +20_10037292_10066351 5072 . G . . END=5072 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 5073 . A . . END=5074 GT:DP:GQ:MIN_DP:PL 0/0:29:71:29:0,71,851 +20_10037292_10066351 5075 . G . . END=5075 GT:DP:GQ:MIN_DP:PL 0/0:27:66:27:0,66,811 +20_10037292_10066351 5076 . T . . END=5078 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 5079 . G . . END=5079 GT:DP:GQ:MIN_DP:PL 0/0:29:71:29:0,71,837 +20_10037292_10066351 5080 . T . . END=5080 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 +20_10037292_10066351 5081 . C . . END=5081 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,867 +20_10037292_10066351 5082 . C . . END=5087 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20_10037292_10066351 5088 . A . . END=5088 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20_10037292_10066351 5089 . G . . END=5095 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20_10037292_10066351 5096 . G . . END=5097 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 5098 . A . . END=5103 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 5104 . C . . END=5106 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20_10037292_10066351 5107 . G . . END=5108 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20_10037292_10066351 5109 . T . . END=5109 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,899 +20_10037292_10066351 5110 . A . . END=5110 GT:DP:GQ:MIN_DP:PL 0/0:29:59:29:0,59,846 +20_10037292_10066351 5111 . C . . END=5129 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,876 +20_10037292_10066351 5130 . A . . END=5130 GT:DP:GQ:MIN_DP:PL 0/0:28:65:28:0,65,831 +20_10037292_10066351 5131 . T . . END=5134 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,843 +20_10037292_10066351 5135 . C . . END=5141 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,949 +20_10037292_10066351 5142 . C . . END=5142 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,965 +20_10037292_10066351 5143 . T . . END=5149 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 5150 . G . . END=5171 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,906 +20_10037292_10066351 5172 . C . . END=5172 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,921 +20_10037292_10066351 5173 . C . . END=5176 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20_10037292_10066351 5177 . C . . END=5183 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 5184 . G . . END=5184 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,946 +20_10037292_10066351 5185 . C . . END=5189 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20_10037292_10066351 5190 . T . . END=5190 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 5191 . G . . END=5193 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 5194 . T . . END=5196 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 5197 . G . . END=5210 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20_10037292_10066351 5211 . A . . END=5468 GT:DP:GQ:MIN_DP:PL 0/0:46:99:36:0,99,1192 +20_10037292_10066351 5469 . A G, 1297.06 . DP=42;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=151200,42 GT:AD:DP:GQ:PL:SB 1/1:0,42,0:42:99:1311,126,0,1311,126,1311:0,0,18,24 +20_10037292_10066351 5470 . G . . END=5495 GT:DP:GQ:MIN_DP:PL 0/0:45:99:43:0,111,1345 +20_10037292_10066351 7536 . C . . END=7552 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,107,1241 +20_10037292_10066351 7553 . A . . END=7553 GT:DP:GQ:MIN_DP:PL 0/0:41:78:41:0,78,1102 +20_10037292_10066351 7554 . A . . END=7555 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,102,1209 +20_10037292_10066351 7556 . C . . END=7556 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1063 +20_10037292_10066351 7557 . A G, 935.06 . DP=36;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=129600,36 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:949,100,0,949,100,949:0,0,17,17 +20_10037292_10066351 7558 . C . . END=7558 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20_10037292_10066351 7559 . T . . END=7559 GT:DP:GQ:MIN_DP:PL 0/0:38:94:38:0,94,1183 +20_10037292_10066351 7560 . C . . END=7569 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 7570 . C . . END=7570 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1111 +20_10037292_10066351 7571 . A . . END=7573 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1138 +20_10037292_10066351 7574 . T . . END=7574 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1087 +20_10037292_10066351 7575 . T . . END=7579 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,108,1069 +20_10037292_10066351 7580 . C . . END=7580 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1164 +20_10037292_10066351 7581 . T . . END=7581 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20_10037292_10066351 7582 . T . . END=7582 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1088 +20_10037292_10066351 7583 . C . . END=7584 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20_10037292_10066351 7585 . G . . END=7585 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20_10037292_10066351 7586 . A . . END=7595 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1485 +20_10037292_10066351 7596 . A . . END=7601 GT:DP:GQ:MIN_DP:PL 0/0:37:96:36:0,96,1440 +20_10037292_10066351 7602 . G . . END=7610 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 7611 . A . . END=7611 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1069 +20_10037292_10066351 7612 . G . . END=7614 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1207 +20_10037292_10066351 7615 . C . . END=7615 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1080 +20_10037292_10066351 7616 . A . . END=7618 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 7619 . T . . END=7630 GT:DP:GQ:MIN_DP:PL 0/0:37:93:35:0,93,1395 +20_10037292_10066351 7631 . T . . END=7632 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 7633 . A . . END=7633 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,1005 +20_10037292_10066351 7634 . G . . END=7649 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20_10037292_10066351 7650 . A . . END=7650 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,1034 +20_10037292_10066351 7651 . C . . END=7657 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 7658 . T . . END=7658 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,981 +20_10037292_10066351 7659 . G . . END=7665 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20_10037292_10066351 7666 . A . . END=7667 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20_10037292_10066351 7668 . C . . END=7668 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 7669 . C . . END=7679 GT:DP:GQ:MIN_DP:PL 0/0:31:82:29:0,82,996 +20_10037292_10066351 7680 . A . . END=7680 GT:DP:GQ:MIN_DP:PL 0/0:30:77:30:0,77,895 +20_10037292_10066351 7681 . C . . END=7684 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20_10037292_10066351 7685 . G . . END=7685 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,993 +20_10037292_10066351 7686 . T . . END=7686 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 7687 . T . . END=7687 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,1008 +20_10037292_10066351 7688 . A . . END=7690 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20_10037292_10066351 7691 . C . . END=7691 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,974 +20_10037292_10066351 7692 . C . . END=7695 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,936 +20_10037292_10066351 7696 . T . . END=7696 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,929 +20_10037292_10066351 7697 . A . . END=7705 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,990 +20_10037292_10066351 7706 . C . . END=7706 GT:DP:GQ:MIN_DP:PL 0/0:33:68:33:0,68,895 +20_10037292_10066351 7707 . A . . END=7708 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 7709 . T . . END=7709 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,937 +20_10037292_10066351 7710 . C . . END=7712 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20_10037292_10066351 7713 . T . . END=7713 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1093 +20_10037292_10066351 7714 . A . . END=7714 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 7715 . C . . END=7715 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1058 +20_10037292_10066351 7716 . A . . END=7718 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 7719 . C . . END=7719 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1091 +20_10037292_10066351 7720 . C . . END=7723 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20_10037292_10066351 7724 . A . . END=7724 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1138 +20_10037292_10066351 7725 . C . . END=7730 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 7731 . A . . END=7742 GT:DP:GQ:MIN_DP:PL 0/0:36:90:32:0,90,1350 +20_10037292_10066351 7743 . A . . END=7744 GT:DP:GQ:MIN_DP:PL 0/0:33:84:32:0,84,1260 +20_10037292_10066351 7745 . A . . END=7748 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1131 +20_10037292_10066351 7749 . T . . END=7751 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 7752 . C . . END=7752 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1118 +20_10037292_10066351 7753 . T . . END=7753 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 7754 . C . . END=7754 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1032 +20_10037292_10066351 7755 . C . . END=7763 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20_10037292_10066351 7764 . T . . END=7764 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,1019 +20_10037292_10066351 7765 . T . . END=7769 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20_10037292_10066351 7770 . C . . END=7774 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 7775 . A . . END=7775 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1053 +20_10037292_10066351 7776 . A . . END=7780 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 7781 . A . . END=7785 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1115 +20_10037292_10066351 7786 . G T, 1043.06 . DP=35;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=126000,35 GT:AD:DP:GQ:PL:SB 1/1:0,34,0:34:99:1057,102,0,1057,102,1057:0,0,19,15 +20_10037292_10066351 7787 . C . . END=7795 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 7796 . A . . END=7796 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1024 +20_10037292_10066351 7797 . A . . END=7798 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20_10037292_10066351 7799 . T . . END=7799 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1065 +20_10037292_10066351 7800 . C . . END=7812 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,102,1061 +20_10037292_10066351 7813 . T . . END=7813 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1099 +20_10037292_10066351 7814 . T . . END=7859 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,102,1254 +20_10037292_10066351 7860 . G . . END=7860 GT:DP:GQ:MIN_DP:PL 0/0:42:95:42:0,95,1293 +20_10037292_10066351 7861 . A . . END=7863 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,108,1620 +20_10037292_10066351 7864 . G . . END=7864 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1148 +20_10037292_10066351 7865 . C . . END=7873 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1575 +20_10037292_10066351 7874 . G . . END=7874 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1195 +20_10037292_10066351 7875 . A . . END=7879 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 7880 . T . . END=7887 GT:DP:GQ:MIN_DP:PL 0/0:35:93:33:0,93,1395 +20_10037292_10066351 7888 . A . . END=7888 GT:DP:GQ:MIN_DP:PL 0/0:34:74:34:0,74,1071 +20_10037292_10066351 7889 . A . . END=7894 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20_10037292_10066351 7895 . C . . END=7895 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,1094 +20_10037292_10066351 7896 . C . . END=7909 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1011 +20_10037292_10066351 7910 . G . . END=7918 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,1215 +20_10037292_10066351 7919 . G . . END=7919 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,968 +20_10037292_10066351 7920 . T . . END=7926 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20_10037292_10066351 7927 . A . . END=7929 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1003 +20_10037292_10066351 7930 . G . . END=7930 GT:DP:GQ:MIN_DP:PL 0/0:31:80:31:0,80,970 +20_10037292_10066351 7931 . A . . END=7933 GT:DP:GQ:MIN_DP:PL 0/0:34:90:30:0,90,986 +20_10037292_10066351 7934 . A . . END=7951 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1485 +20_10037292_10066351 7952 . T . . END=7952 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1244 +20_10037292_10066351 7953 . G . . END=7963 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,100,1172 +20_10037292_10066351 7964 . T . . END=7964 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20_10037292_10066351 7965 . T . . END=7967 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1485 +20_10037292_10066351 7968 . C . . END=7968 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1440 +20_10037292_10066351 7969 . T . . END=7975 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20_10037292_10066351 7976 . T . . END=7976 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1161 +20_10037292_10066351 7977 . A . . END=7986 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,101,1160 +20_10037292_10066351 7987 . T . . END=7987 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1081 +20_10037292_10066351 7988 . G . . END=7990 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20_10037292_10066351 7991 . G . . END=7991 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1134 +20_10037292_10066351 7992 . A . . END=8011 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,101,1155 +20_10037292_10066351 8012 . A . . END=8012 GT:DP:GQ:MIN_DP:PL 0/0:41:97:41:0,97,1234 +20_10037292_10066351 8013 . A . . END=8079 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,99,1221 +20_10037292_10066351 8080 . C . . END=8083 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20_10037292_10066351 8084 . G . . END=8086 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20_10037292_10066351 8087 . A . . END=8093 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20_10037292_10066351 8094 . A . . END=8096 GT:DP:GQ:MIN_DP:PL 0/0:34:81:34:0,81,992 +20_10037292_10066351 8097 . A . . END=8098 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20_10037292_10066351 8099 . T . . END=8099 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,989 +20_10037292_10066351 8100 . A . . END=8102 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1064 +20_10037292_10066351 8103 . A . . END=8103 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,1037 +20_10037292_10066351 8104 . A . . END=8104 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1037 +20_10037292_10066351 8105 . A . . END=8105 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1022 +20_10037292_10066351 8106 . T . . END=8106 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 8107 . G . . END=8109 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1018 +20_10037292_10066351 8110 . C . . END=8117 GT:DP:GQ:MIN_DP:PL 0/0:33:75:28:0,75,1125 +20_10037292_10066351 8118 . A . . END=8121 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20_10037292_10066351 8122 . G . . END=8130 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,945 +20_10037292_10066351 8131 . A . . END=8131 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 8132 . C . . END=8132 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,970 +20_10037292_10066351 8133 . A . . END=8135 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,954 +20_10037292_10066351 8136 . C . . END=8140 GT:DP:GQ:MIN_DP:PL 0/0:31:78:30:0,78,1170 +20_10037292_10066351 8141 . G . . END=8141 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 8142 . A . . END=8144 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20_10037292_10066351 8145 . T . . END=8150 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 8151 . A . . END=8156 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +20_10037292_10066351 8157 . C . . END=8157 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20_10037292_10066351 8158 . C . . END=8180 GT:DP:GQ:MIN_DP:PL 0/0:28:70:26:0,70,854 +20_10037292_10066351 8181 . A . . END=8181 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,812 +20_10037292_10066351 8182 . T . . END=8204 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,730 +20_10037292_10066351 8205 . G . . END=8205 GT:DP:GQ:MIN_DP:PL 0/0:26:63:26:0,63,702 +20_10037292_10066351 8206 . T . . END=8206 GT:DP:GQ:MIN_DP:PL 0/0:26:75:26:0,75,1125 +20_10037292_10066351 8207 . C . . END=8207 GT:DP:GQ:MIN_DP:PL 0/0:26:62:26:0,62,793 +20_10037292_10066351 8208 . C . . END=8209 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20_10037292_10066351 8210 . T . . END=8210 GT:DP:GQ:MIN_DP:PL 0/0:27:66:27:0,66,868 +20_10037292_10066351 8211 . T . . END=8216 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +20_10037292_10066351 8217 . A . . END=8223 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,854 +20_10037292_10066351 8224 . T . . END=8229 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20_10037292_10066351 8230 . A . . END=8235 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1055 +20_10037292_10066351 8236 . G . . END=8236 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,999 +20_10037292_10066351 8237 . C . . END=8240 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 8241 . A . . END=8241 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1044 +20_10037292_10066351 8242 . C . . END=8247 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20_10037292_10066351 8248 . T . . END=8250 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1103 +20_10037292_10066351 8251 . C . . END=8251 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1026 +20_10037292_10066351 8252 . C . . END=8258 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,102,1121 +20_10037292_10066351 8259 . T . . END=8259 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1226 +20_10037292_10066351 8260 . T . . END=8261 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 8262 . T . . END=8269 GT:DP:GQ:MIN_DP:PL 0/0:38:93:36:0,93,1395 +20_10037292_10066351 8270 . C . . END=8270 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,1122 +20_10037292_10066351 8271 . T . . END=8272 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20_10037292_10066351 8273 . T . . END=8274 GT:DP:GQ:MIN_DP:PL 0/0:34:80:34:0,80,1002 +20_10037292_10066351 8275 . T . . END=8276 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,1073 +20_10037292_10066351 8277 . G . . END=8277 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,1011 +20_10037292_10066351 8278 . C . . END=8278 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1007 +20_10037292_10066351 8279 . C . . END=8279 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,970 +20_10037292_10066351 8280 . A . . END=8280 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1088 +20_10037292_10066351 8281 . T . . END=8282 GT:DP:GQ:MIN_DP:PL 0/0:34:82:33:0,82,1000 +20_10037292_10066351 8283 . C . . END=8285 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1075 +20_10037292_10066351 8286 . T . . END=8286 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1030 +20_10037292_10066351 8287 . T . . END=8292 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 8293 . C . . END=8293 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,1030 +20_10037292_10066351 8294 . A . . END=8296 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 8297 . A . . END=8297 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20_10037292_10066351 8298 . C . . END=8298 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,1031 +20_10037292_10066351 8299 . T . . END=8299 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1109 +20_10037292_10066351 8300 . C . . END=8305 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1167 +20_10037292_10066351 8306 . A . . END=8307 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1113 +20_10037292_10066351 8308 . C . . END=8308 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,991 +20_10037292_10066351 8309 . A . . END=8310 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 8311 . C . . END=8311 GT:DP:GQ:MIN_DP:PL 0/0:34:70:34:0,70,951 +20_10037292_10066351 8312 . A . . END=8314 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 8315 . C . . END=8332 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,990 +20_10037292_10066351 8333 . T . . END=8333 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1016 +20_10037292_10066351 8334 . A . . END=8335 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 8336 . G . . END=8336 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1037 +20_10037292_10066351 8337 . A . . END=8337 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20_10037292_10066351 8338 . C . . END=8338 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1023 +20_10037292_10066351 8339 . T . . END=8339 GT:DP:GQ:MIN_DP:PL 0/0:36:69:36:0,69,1050 +20_10037292_10066351 8340 . T . . END=8340 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1102 +20_10037292_10066351 8341 . A . . END=8341 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20_10037292_10066351 8342 . G . . END=8342 GT:DP:GQ:MIN_DP:PL 0/0:36:88:36:0,88,1074 +20_10037292_10066351 8343 . A . . END=8349 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,117,1755 +20_10037292_10066351 8350 . G C, 1162.06 . DP=39;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=140400,39 GT:AD:DP:GQ:PL:SB 1/1:0,39,0:39:99:1176,115,0,1176,115,1176:0,0,16,23 +20_10037292_10066351 8351 . A . . END=8355 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,114,1710 +20_10037292_10066351 8356 . T . . END=8356 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1267 +20_10037292_10066351 8357 . T . . END=8357 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,108,1620 +20_10037292_10066351 8358 . A . . END=8358 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1232 +20_10037292_10066351 8359 . A . . END=8365 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,99,1210 +20_10037292_10066351 8366 . A . . END=8367 GT:DP:GQ:MIN_DP:PL 0/0:38:96:37:0,96,1440 +20_10037292_10066351 8368 . T . . END=8368 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20_10037292_10066351 8369 . T . . END=8369 GT:DP:GQ:MIN_DP:PL 0/0:39:94:39:0,94,1156 +20_10037292_10066351 8370 . C . . END=8378 GT:DP:GQ:MIN_DP:PL 0/0:39:99:34:0,99,1485 +20_10037292_10066351 8379 . G . . END=8388 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 8389 . G . . END=8394 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20_10037292_10066351 8395 . A . . END=8396 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20_10037292_10066351 8397 . G . . END=8400 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20_10037292_10066351 8401 . A . . END=8401 GT:DP:GQ:MIN_DP:PL 0/0:30:77:30:0,77,920 +20_10037292_10066351 8402 . A . . END=8408 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,947 +20_10037292_10066351 8409 . C . . END=8425 GT:DP:GQ:MIN_DP:PL 0/0:29:72:27:0,72,1080 +20_10037292_10066351 8426 . C . . END=8426 GT:DP:GQ:MIN_DP:PL 0/0:27:36:27:0,36,772 +20_10037292_10066351 8427 . T . . END=8428 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,1125 +20_10037292_10066351 8429 . T . . END=8438 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20_10037292_10066351 8439 . G . . END=8439 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,935 +20_10037292_10066351 8440 . C . . END=8440 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20_10037292_10066351 8441 . T . . END=8458 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,938 +20_10037292_10066351 8459 . G . . END=8483 GT:DP:GQ:MIN_DP:PL 0/0:40:99:35:0,102,1192 +20_10037292_10066351 8484 . T . . END=8501 GT:DP:GQ:MIN_DP:PL 0/0:38:90:30:0,90,944 +20_10037292_10066351 8502 . A . . END=8512 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 8513 . G . . END=8513 GT:DP:GQ:MIN_DP:PL 0/0:30:59:30:0,59,919 +20_10037292_10066351 8514 . A . . END=8521 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,956 +20_10037292_10066351 8522 . A . . END=8529 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,934 +20_10037292_10066351 8530 . C . . END=8530 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,911 +20_10037292_10066351 8531 . C . . END=8537 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,980 +20_10037292_10066351 8538 . A . . END=8549 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20_10037292_10066351 8550 . A . . END=8556 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20_10037292_10066351 8557 . A . . END=8576 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1007 +20_10037292_10066351 8577 . G . . END=8581 GT:DP:GQ:MIN_DP:PL 0/0:37:93:35:0,93,1087 +20_10037292_10066351 8582 . C . . END=8584 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1260 +20_10037292_10066351 8585 . T . . END=8587 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20_10037292_10066351 8588 . C . . END=8591 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1485 +20_10037292_10066351 8592 . T . . END=8592 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1049 +20_10037292_10066351 8593 . G . . END=8595 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1040 +20_10037292_10066351 8596 . C . . END=8599 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 8600 . T . . END=8606 GT:DP:GQ:MIN_DP:PL 0/0:34:84:33:0,84,1260 +20_10037292_10066351 8607 . C . . END=8609 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,1170 +20_10037292_10066351 8610 . G . . END=8611 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 8612 . T . . END=8613 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20_10037292_10066351 8614 . G . . END=8620 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20_10037292_10066351 8621 . C . . END=8621 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,915 +20_10037292_10066351 8622 . A . . END=8623 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,864 +20_10037292_10066351 8624 . T . . END=8624 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,872 +20_10037292_10066351 8625 . G . . END=8633 GT:DP:GQ:MIN_DP:PL 0/0:30:84:28:0,84,928 +20_10037292_10066351 8634 . T . . END=8634 GT:DP:GQ:MIN_DP:PL 0/0:28:63:28:0,63,877 +20_10037292_10066351 8635 . G . . END=8637 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 8638 . T . . END=8638 GT:DP:GQ:MIN_DP:PL 0/0:28:71:28:0,71,847 +20_10037292_10066351 8639 . C . . END=8644 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 8645 . T . . END=8645 GT:DP:GQ:MIN_DP:PL 0/0:28:53:28:0,53,770 +20_10037292_10066351 8646 . C . . END=8646 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,950 +20_10037292_10066351 8647 . T . . END=8668 GT:DP:GQ:MIN_DP:PL 0/0:33:90:30:0,90,922 +20_10037292_10066351 8669 . C . . END=8672 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 8673 . A . . END=8673 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 8674 . G . . END=8674 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1037 +20_10037292_10066351 8675 . G . . END=8676 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 8677 . C . . END=8678 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 8679 . C . . END=8683 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20_10037292_10066351 8684 . T . . END=8684 GT:DP:GQ:MIN_DP:PL 0/0:36:76:36:0,76,1090 +20_10037292_10066351 8685 . T . . END=8702 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1065 +20_10037292_10066351 8703 . T . . END=8703 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 8704 . T . . END=8704 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,1041 +20_10037292_10066351 8705 . T . . END=8720 GT:DP:GQ:MIN_DP:PL 0/0:35:90:33:0,90,1064 +20_10037292_10066351 8721 . A . . END=8725 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 8726 . A . . END=8728 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20_10037292_10066351 8729 . A . . END=8736 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,928 +20_10037292_10066351 8737 . T . . END=8741 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 8742 . A . . END=8742 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,952 +20_10037292_10066351 8743 . A . . END=8745 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,980 +20_10037292_10066351 8746 . C . . END=8746 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,822 +20_10037292_10066351 8747 . A . . END=8747 GT:DP:GQ:MIN_DP:PL 0/0:32:83:32:0,83,986 +20_10037292_10066351 8748 . C . . END=8749 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20_10037292_10066351 8750 . A . . END=8751 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,979 +20_10037292_10066351 8752 . A . . END=8753 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 8754 . T . . END=8754 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,929 +20_10037292_10066351 8755 . G . . END=8757 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20_10037292_10066351 8758 . A . . END=8758 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,1005 +20_10037292_10066351 8759 . C . . END=8770 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20_10037292_10066351 8771 . T . . END=8771 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,819 +20_10037292_10066351 8772 . G . . END=8773 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 8774 . G . . END=8774 GT:DP:GQ:MIN_DP:PL 0/0:33:71:33:0,71,962 +20_10037292_10066351 8775 . C . . END=8775 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 8776 . T . . END=8776 GT:DP:GQ:MIN_DP:PL 0/0:33:52:33:0,52,865 +20_10037292_10066351 8777 . C . . END=8778 GT:DP:GQ:MIN_DP:PL 0/0:34:82:33:0,82,789 +20_10037292_10066351 8779 . C . . END=8779 GT:DP:GQ:MIN_DP:PL 0/0:35:71:35:0,71,883 +20_10037292_10066351 8780 . A . . END=8781 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,114,1174 +20_10037292_10066351 8782 . G . . END=8782 GT:DP:GQ:MIN_DP:PL 0/0:37:33:37:0,33,916 +20_10037292_10066351 8783 . A . . END=8791 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1182 +20_10037292_10066351 8792 . G . . END=8792 GT:DP:GQ:MIN_DP:PL 0/0:39:78:39:0,78,1074 +20_10037292_10066351 8793 . G . . END=8800 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,102,1039 +20_10037292_10066351 8801 . T . . END=8801 GT:DP:GQ:MIN_DP:PL 0/0:40:81:40:0,81,1090 +20_10037292_10066351 8802 . T . . END=8802 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,106,1067 +20_10037292_10066351 8803 . C . . END=8803 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,984 +20_10037292_10066351 8804 . C . . END=8804 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,102,1041 +20_10037292_10066351 8805 . C . . END=8805 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,986 +20_10037292_10066351 8806 . C . . END=8806 GT:DP:GQ:MIN_DP:PL 0/0:38:79:38:0,79,1019 +20_10037292_10066351 8807 . A . . END=8813 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,111,1665 +20_10037292_10066351 8814 . G . . END=8814 GT:DP:GQ:MIN_DP:PL 0/0:40:76:40:0,76,1133 +20_10037292_10066351 8815 . A . . END=8816 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20_10037292_10066351 8817 . T . . END=8817 GT:DP:GQ:MIN_DP:PL 0/0:39:39:39:0,39,868 +20_10037292_10066351 8818 . T . . END=8826 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1002 +20_10037292_10066351 8827 . T . . END=8827 GT:DP:GQ:MIN_DP:PL 0/0:38:75:38:0,75,1016 +20_10037292_10066351 8828 . G . . END=8828 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1530 +20_10037292_10066351 8829 . G . . END=8831 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20_10037292_10066351 8832 . A . . END=8834 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 8835 . C . . END=8835 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,892 +20_10037292_10066351 8836 . A . . END=8836 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 8837 . G . . END=8837 GT:DP:GQ:MIN_DP:PL 0/0:35:61:35:0,61,962 +20_10037292_10066351 8838 . A . . END=8841 GT:DP:GQ:MIN_DP:PL 0/0:35:96:33:0,96,1440 +20_10037292_10066351 8842 . A . . END=8843 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20_10037292_10066351 8844 . A . . END=8844 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1120 +20_10037292_10066351 8845 . A . . END=8845 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20_10037292_10066351 8846 . G . . END=8846 GT:DP:GQ:MIN_DP:PL 0/0:36:74:36:0,74,1003 +20_10037292_10066351 8847 . G . . END=8847 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1017 +20_10037292_10066351 8848 . G . . END=8848 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1030 +20_10037292_10066351 8849 . A . . END=8849 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1039 +20_10037292_10066351 8850 . A . . END=8856 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20_10037292_10066351 8857 . A . . END=8857 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,1039 +20_10037292_10066351 8858 . G . . END=8858 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,999 +20_10037292_10066351 8859 . G . . END=8860 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20_10037292_10066351 8861 . A . . END=8861 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1118 +20_10037292_10066351 8862 . G . . END=8862 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 8863 . G . . END=8863 GT:DP:GQ:MIN_DP:PL 0/0:37:91:37:0,91,1058 +20_10037292_10066351 8864 . G . . END=8864 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,1033 +20_10037292_10066351 8865 . G . . END=8869 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1530 +20_10037292_10066351 8870 . G . . END=8870 GT:DP:GQ:MIN_DP:PL 0/0:38:78:38:0,78,1017 +20_10037292_10066351 8871 . G . . END=8871 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1039 +20_10037292_10066351 8872 . A . . END=8880 GT:DP:GQ:MIN_DP:PL 0/0:37:93:36:0,93,1054 +20_10037292_10066351 8881 . A . . END=8881 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1054 +20_10037292_10066351 8882 . A . . END=8882 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20_10037292_10066351 8883 . A . . END=8883 GT:DP:GQ:MIN_DP:PL 0/0:37:87:37:0,87,1305 +20_10037292_10066351 8884 . G . . END=8884 GT:DP:GQ:MIN_DP:PL 0/0:36:77:36:0,77,1086 +20_10037292_10066351 8885 . A . . END=8885 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,966 +20_10037292_10066351 8886 . AAGAAAGAAAG A, 1268.03 . DP=34;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=122400,34 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:88:1282,88,0,1282,88,1282:0,0,17,12 +20_10037292_10066351 8897 . A . . END=8903 GT:DP:GQ:MIN_DP:PL 0/0:35:84:34:0,84,1260 +20_10037292_10066351 8904 . A . . END=8904 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,695 +20_10037292_10066351 8905 . A . . END=8905 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20_10037292_10066351 8906 . G . . END=8906 GT:DP:GQ:MIN_DP:PL 0/0:35:0:35:0,0,689 +20_10037292_10066351 8907 . A . . END=8907 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 8908 . G . . END=8908 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1032 +20_10037292_10066351 8909 . A . . END=8911 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20_10037292_10066351 8912 . G . . END=8912 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,963 +20_10037292_10066351 8913 . A . . END=8916 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 8917 . A . . END=8917 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,870 +20_10037292_10066351 8918 . G . . END=8918 GT:DP:GQ:MIN_DP:PL 0/0:31:64:31:0,64,892 +20_10037292_10066351 8919 . A . . END=8919 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 8920 . A . . END=8920 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,867 +20_10037292_10066351 8921 . A . . END=8921 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 8922 . G . . END=8922 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,925 +20_10037292_10066351 8923 . A . . END=8923 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20_10037292_10066351 8924 . G . . END=8924 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,884 +20_10037292_10066351 8925 . G . . END=8925 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,925 +20_10037292_10066351 8926 . A . . END=8926 GT:DP:GQ:MIN_DP:PL 0/0:32:68:32:0,68,827 +20_10037292_10066351 8927 . A . . END=8928 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1215 +20_10037292_10066351 8929 . G . . END=8929 GT:DP:GQ:MIN_DP:PL 0/0:32:33:32:0,33,853 +20_10037292_10066351 8930 . A . . END=8931 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,1215 +20_10037292_10066351 8932 . A . . END=8932 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20_10037292_10066351 8933 . G . . END=8933 GT:DP:GQ:MIN_DP:PL 0/0:35:73:35:0,73,979 +20_10037292_10066351 8934 . A . . END=8937 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20_10037292_10066351 8938 . A . . END=8938 GT:DP:GQ:MIN_DP:PL 0/0:35:78:35:0,78,1170 +20_10037292_10066351 8939 . G . . END=8939 GT:DP:GQ:MIN_DP:PL 0/0:35:42:35:0,42,927 +20_10037292_10066351 8940 . A . . END=8941 GT:DP:GQ:MIN_DP:PL 0/0:34:81:32:0,81,1215 +20_10037292_10066351 8942 . A . . END=8944 GT:DP:GQ:MIN_DP:PL 0/0:34:78:33:0,78,1170 +20_10037292_10066351 8945 . G . . END=8945 GT:DP:GQ:MIN_DP:PL 0/0:33:67:33:0,67,909 +20_10037292_10066351 8946 . A . . END=8948 GT:DP:GQ:MIN_DP:PL 0/0:32:76:32:0,76,882 +20_10037292_10066351 8949 . G . . END=8952 GT:DP:GQ:MIN_DP:PL 0/0:34:81:33:0,81,1215 +20_10037292_10066351 8953 . G . . END=8953 GT:DP:GQ:MIN_DP:PL 0/0:33:68:33:0,68,878 +20_10037292_10066351 8954 . A . . END=8954 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1260 +20_10037292_10066351 8955 . G . . END=8955 GT:DP:GQ:MIN_DP:PL 0/0:33:68:33:0,68,881 +20_10037292_10066351 8956 . A . . END=8961 GT:DP:GQ:MIN_DP:PL 0/0:32:80:30:0,80,916 +20_10037292_10066351 8962 . A . . END=8963 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,869 +20_10037292_10066351 8964 . A . . END=8964 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 8965 . G . . END=8965 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,792 +20_10037292_10066351 8966 . A . . END=8967 GT:DP:GQ:MIN_DP:PL 0/0:31:80:31:0,80,872 +20_10037292_10066351 8968 . G . . END=8968 GT:DP:GQ:MIN_DP:PL 0/0:33:27:33:0,27,752 +20_10037292_10066351 8969 . G . . END=8974 GT:DP:GQ:MIN_DP:PL 0/0:34:83:32:0,83,944 +20_10037292_10066351 8975 . G . . END=8975 GT:DP:GQ:MIN_DP:PL 0/0:34:70:34:0,70,857 +20_10037292_10066351 8976 . A . . END=8976 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1260 +20_10037292_10066351 8977 . G . . END=8977 GT:DP:GQ:MIN_DP:PL 0/0:34:71:34:0,71,895 +20_10037292_10066351 8978 . A . . END=8980 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20_10037292_10066351 8981 . G . . END=8981 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,921 +20_10037292_10066351 8982 . A . . END=8984 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20_10037292_10066351 8985 . A . . END=8993 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +20_10037292_10066351 8994 . A . . END=8994 GT:DP:GQ:MIN_DP:PL 0/0:31:68:31:0,68,872 +20_10037292_10066351 8995 . G . . END=8995 GT:DP:GQ:MIN_DP:PL 0/0:31:28:31:0,28,772 +20_10037292_10066351 8996 . A . . END=8996 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 8997 . G . . END=8997 GT:DP:GQ:MIN_DP:PL 0/0:31:64:31:0,64,833 +20_10037292_10066351 8998 . A . . END=9007 GT:DP:GQ:MIN_DP:PL 0/0:33:81:30:0,81,958 +20_10037292_10066351 9008 . G . . END=9008 GT:DP:GQ:MIN_DP:PL 0/0:34:73:34:0,73,965 +20_10037292_10066351 9009 . A . . END=9010 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20_10037292_10066351 9011 . G . . END=9011 GT:DP:GQ:MIN_DP:PL 0/0:34:66:34:0,66,929 +20_10037292_10066351 9012 . G . . END=9013 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,908 +20_10037292_10066351 9014 . A . . END=9014 GT:DP:GQ:MIN_DP:PL 0/0:33:70:33:0,70,956 +20_10037292_10066351 9015 . G . . END=9015 GT:DP:GQ:MIN_DP:PL 0/0:32:13:32:0,13,731 +20_10037292_10066351 9016 . G . . END=9016 GT:DP:GQ:MIN_DP:PL 0/0:32:64:32:0,64,884 +20_10037292_10066351 9017 . A . . END=9017 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1007 +20_10037292_10066351 9018 . A . . END=9018 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20_10037292_10066351 9019 . G . . END=9019 GT:DP:GQ:MIN_DP:PL 0/0:39:69:39:0,69,1010 +20_10037292_10066351 9020 . A . . END=9020 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +20_10037292_10066351 9021 . A . . END=9021 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1070 +20_10037292_10066351 9022 . A . . END=9024 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,111,1080 +20_10037292_10066351 9025 . T . . END=9025 GT:DP:GQ:MIN_DP:PL 0/0:37:0:37:0,0,654 +20_10037292_10066351 9026 . G . . END=9026 GT:DP:GQ:MIN_DP:PL 0/0:37:83:37:0,83,1047 +20_10037292_10066351 9027 . A . . END=9028 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1620 +20_10037292_10066351 9029 . G . . END=9029 GT:DP:GQ:MIN_DP:PL 0/0:38:86:38:0,86,1046 +20_10037292_10066351 9030 . G . . END=9030 GT:DP:GQ:MIN_DP:PL 0/0:38:56:38:0,56,999 +20_10037292_10066351 9031 . G . . END=9031 GT:DP:GQ:MIN_DP:PL 0/0:38:70:38:0,70,1004 +20_10037292_10066351 9032 . A . . END=9032 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20_10037292_10066351 9033 . G . . END=9033 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1083 +20_10037292_10066351 9034 . G . . END=9034 GT:DP:GQ:MIN_DP:PL 0/0:38:25:38:0,25,908 +20_10037292_10066351 9035 . A . . END=9035 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1012 +20_10037292_10066351 9036 . A . . END=9036 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20_10037292_10066351 9037 . G . . END=9037 GT:DP:GQ:MIN_DP:PL 0/0:38:71:38:0,71,1040 +20_10037292_10066351 9038 . G . . END=9038 GT:DP:GQ:MIN_DP:PL 0/0:36:41:36:0,41,937 +20_10037292_10066351 9039 . A . . END=9042 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20_10037292_10066351 9043 . A . . END=9043 GT:DP:GQ:MIN_DP:PL 0/0:36:83:36:0,83,1090 +20_10037292_10066351 9044 . G . . END=9044 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20_10037292_10066351 9045 . G . . END=9045 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1010 +20_10037292_10066351 9046 . A . . END=9050 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20_10037292_10066351 9051 . G . . END=9051 GT:DP:GQ:MIN_DP:PL 0/0:35:76:35:0,76,1041 +20_10037292_10066351 9052 . G . . END=9052 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1030 +20_10037292_10066351 9053 . A . . END=9053 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20_10037292_10066351 9054 . A . . END=9054 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,1075 +20_10037292_10066351 9055 . G . . END=9060 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,101,974 +20_10037292_10066351 9061 . A . . END=9068 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20_10037292_10066351 9069 . G . . END=9069 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1056 +20_10037292_10066351 9070 . A . . END=9070 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 9071 . A . . END=9071 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20_10037292_10066351 9072 . G . . END=9073 GT:DP:GQ:MIN_DP:PL 0/0:37:64:37:0,64,1071 +20_10037292_10066351 9074 . A . . END=9074 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20_10037292_10066351 9075 . A . . END=9076 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,106,1209 +20_10037292_10066351 9077 . A . . END=9082 GT:DP:GQ:MIN_DP:PL 0/0:38:90:36:0,90,1214 +20_10037292_10066351 9083 . G . . END=9083 GT:DP:GQ:MIN_DP:PL 0/0:37:86:37:0,86,1135 +20_10037292_10066351 9084 . G . . END=9084 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20_10037292_10066351 9085 . G . . END=9085 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1148 +20_10037292_10066351 9086 . G . . END=9088 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1395 +20_10037292_10066351 9089 . G . . END=9097 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,934 +20_10037292_10066351 9098 . G . . END=9098 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,971 +20_10037292_10066351 9099 . G . . END=9101 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,981 +20_10037292_10066351 9102 . T . . END=9102 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,847 +20_10037292_10066351 9103 . A . . END=9103 GT:DP:GQ:MIN_DP:PL 0/0:30:63:30:0,63,860 +20_10037292_10066351 9104 . A . . END=9104 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20_10037292_10066351 9105 . A . . END=9105 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20_10037292_10066351 9106 . G . . END=9106 GT:DP:GQ:MIN_DP:PL 0/0:29:64:29:0,64,878 +20_10037292_10066351 9107 . A . . END=9107 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20_10037292_10066351 9108 . A . . END=9108 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 9109 . A . . END=9109 GT:DP:GQ:MIN_DP:PL 0/0:31:71:31:0,71,936 +20_10037292_10066351 9110 . G . . END=9110 GT:DP:GQ:MIN_DP:PL 0/0:31:62:31:0,62,914 +20_10037292_10066351 9111 . A . . END=9112 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 9113 . G . . END=9118 GT:DP:GQ:MIN_DP:PL 0/0:31:72:31:0,72,1080 +20_10037292_10066351 9119 . G . . END=9119 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,873 +20_10037292_10066351 9120 . A . . END=9120 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +20_10037292_10066351 9121 . T . . END=9121 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,869 +20_10037292_10066351 9122 . G . . END=9122 GT:DP:GQ:MIN_DP:PL 0/0:28:52:28:0,52,788 +20_10037292_10066351 9123 . G . . END=9123 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,830 +20_10037292_10066351 9124 . A . . END=9124 GT:DP:GQ:MIN_DP:PL 0/0:28:51:28:0,51,802 +20_10037292_10066351 9125 . G . . END=9125 GT:DP:GQ:MIN_DP:PL 0/0:26:63:26:0,63,799 +20_10037292_10066351 9126 . A . . END=9126 GT:DP:GQ:MIN_DP:PL 0/0:27:58:27:0,58,789 +20_10037292_10066351 9127 . A . . END=9127 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20_10037292_10066351 9128 . G . . END=9128 GT:DP:GQ:MIN_DP:PL 0/0:27:53:27:0,53,781 +20_10037292_10066351 9129 . A . . END=9135 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,809 +20_10037292_10066351 9136 . A . . END=9136 GT:DP:GQ:MIN_DP:PL 0/0:27:68:27:0,68,796 +20_10037292_10066351 9137 . C . . END=9140 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20_10037292_10066351 9141 . A . . END=9142 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20_10037292_10066351 9143 . A . . END=9143 GT:DP:GQ:MIN_DP:PL 0/0:30:77:30:0,77,887 +20_10037292_10066351 9144 . A . . END=9145 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20_10037292_10066351 9146 . T . . END=9146 GT:DP:GQ:MIN_DP:PL 0/0:29:74:29:0,74,817 +20_10037292_10066351 9147 . G . . END=9147 GT:DP:GQ:MIN_DP:PL 0/0:29:69:29:0,69,824 +20_10037292_10066351 9148 . G . . END=9148 GT:DP:GQ:MIN_DP:PL 0/0:29:70:29:0,70,800 +20_10037292_10066351 9149 . C . . END=9152 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,822 +20_10037292_10066351 9153 . T . . END=9153 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,914 +20_10037292_10066351 9154 . A . . END=9154 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,804 +20_10037292_10066351 9155 . C . . END=9158 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,889 +20_10037292_10066351 9159 . C . . END=9163 GT:DP:GQ:MIN_DP:PL 0/0:34:81:27:0,81,827 +20_10037292_10066351 9164 . C . . END=9167 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1016 +20_10037292_10066351 9168 . A . . END=9168 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 9169 . C . . END=9175 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 9176 . A . . END=9199 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,981 +20_10037292_10066351 9200 . T . . END=9200 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1180 +20_10037292_10066351 9201 . T . . END=9201 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,111,1221 +20_10037292_10066351 9202 . T . . END=9202 GT:DP:GQ:MIN_DP:PL 0/0:42:90:42:0,90,1135 +20_10037292_10066351 9203 . C . . END=9225 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,100,1080 +20_10037292_10066351 9226 . G . . END=9226 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1056 +20_10037292_10066351 9227 . C . . END=9227 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 9228 . T . . END=9228 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1056 +20_10037292_10066351 9229 . C . . END=9229 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 9230 . T . . END=9230 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1055 +20_10037292_10066351 9231 . C . . END=9236 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,104,1030 +20_10037292_10066351 9237 . G . . END=9237 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1042 +20_10037292_10066351 9238 . C . . END=9239 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1017 +20_10037292_10066351 9240 . A . . END=9242 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20_10037292_10066351 9243 . T . . END=9244 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1084 +20_10037292_10066351 9245 . A G, 26.64 . BaseQRankSum=-1.133;DP=35;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=126000,35;ReadPosRankSum=1.071 GT:AD:DP:GQ:PL:SB 0/1:29,5,0:34:34:34,0,814,120,828,948:11,18,1,4 +20_10037292_10066351 9246 . T . . END=9246 GT:DP:GQ:MIN_DP:PL 0/0:37:83:37:0,83,1071 +20_10037292_10066351 9247 . T . . END=9262 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1084 +20_10037292_10066351 9263 . G . . END=9265 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1018 +20_10037292_10066351 9266 . T . . END=9266 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,111,1161 +20_10037292_10066351 9267 . G . . END=9267 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1120 +20_10037292_10066351 9268 . A . . END=9268 GT:DP:GQ:MIN_DP:PL 0/0:38:73:38:0,73,909 +20_10037292_10066351 9269 . C . . END=9350 GT:DP:GQ:MIN_DP:PL 0/0:45:99:38:0,105,1281 +20_10037292_10066351 9351 . A . . END=9351 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1158 +20_10037292_10066351 9352 . T . . END=9355 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,105,1575 +20_10037292_10066351 9356 . C . . END=9356 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1127 +20_10037292_10066351 9357 . A . . END=9358 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1169 +20_10037292_10066351 9359 . A . . END=9359 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1110 +20_10037292_10066351 9360 . C . . END=9361 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,111,1087 +20_10037292_10066351 9362 . C . . END=9362 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1186 +20_10037292_10066351 9363 . T . . END=9406 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,104,1220 +20_10037292_10066351 9407 . G . . END=9407 GT:DP:GQ:MIN_DP:PL 0/0:45:93:45:0,93,1366 +20_10037292_10066351 9408 . C . . END=9414 GT:DP:GQ:MIN_DP:PL 0/0:45:99:43:0,105,1575 +20_10037292_10066351 9415 . T . . END=9425 GT:DP:GQ:MIN_DP:PL 0/0:39:90:35:0,90,1068 +20_10037292_10066351 9426 . T . . END=9427 GT:DP:GQ:MIN_DP:PL 0/0:33:81:32:0,81,996 +20_10037292_10066351 9428 . A . . END=9428 GT:DP:GQ:MIN_DP:PL 0/0:32:71:32:0,71,957 +20_10037292_10066351 9429 . C . . END=9439 GT:DP:GQ:MIN_DP:PL 0/0:32:80:31:0,80,877 +20_10037292_10066351 9440 . T . . END=9440 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 9441 . T . . END=9452 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,1215 +20_10037292_10066351 9453 . A . . END=9454 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,870 +20_10037292_10066351 9455 . G . . END=9457 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20_10037292_10066351 9458 . A . . END=9468 GT:DP:GQ:MIN_DP:PL 0/0:30:72:29:0,72,898 +20_10037292_10066351 9469 . T . . END=9469 GT:DP:GQ:MIN_DP:PL 0/0:28:56:28:0,56,791 +20_10037292_10066351 9470 . C . . END=9471 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +20_10037292_10066351 9472 . G . . END=9488 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,965 +20_10037292_10066351 9489 . C . . END=9489 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,962 +20_10037292_10066351 9490 . C . . END=9491 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,946 +20_10037292_10066351 9492 . A . . END=9493 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,1034 +20_10037292_10066351 9494 . A . . END=9494 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1040 +20_10037292_10066351 9495 . T . . END=9495 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 9496 . A . . END=9496 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 9497 . T . . END=9497 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,1047 +20_10037292_10066351 9498 . C . . END=9500 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 9501 . C . . END=9505 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20_10037292_10066351 9506 . C . . END=9507 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20_10037292_10066351 9508 . T . . END=9508 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 9509 . G . . END=9512 GT:DP:GQ:MIN_DP:PL 0/0:34:87:33:0,87,1305 +20_10037292_10066351 9513 . C . . END=9513 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20_10037292_10066351 9514 . C . . END=9518 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 +20_10037292_10066351 9519 . G . . END=9519 GT:DP:GQ:MIN_DP:PL 0/0:31:74:31:0,74,915 +20_10037292_10066351 9520 . C . . END=9521 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 9522 . C . . END=9525 GT:DP:GQ:MIN_DP:PL 0/0:31:78:30:0,78,1170 +20_10037292_10066351 9526 . C . . END=9528 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20_10037292_10066351 9529 . A . . END=9529 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,772 +20_10037292_10066351 9530 . C . . END=9533 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20_10037292_10066351 9534 . A . . END=9534 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,826 +20_10037292_10066351 9535 . A . . END=9544 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20_10037292_10066351 9545 . A . . END=9546 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,800 +20_10037292_10066351 9547 . T . . END=9549 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,954 +20_10037292_10066351 9550 . A . . END=9551 GT:DP:GQ:MIN_DP:PL 0/0:32:70:31:0,70,887 +20_10037292_10066351 9552 . C . . END=9552 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 9553 . T . . END=9553 GT:DP:GQ:MIN_DP:PL 0/0:31:80:31:0,80,925 +20_10037292_10066351 9554 . C . . END=9556 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 9557 . A . . END=9558 GT:DP:GQ:MIN_DP:PL 0/0:31:72:30:0,72,839 +20_10037292_10066351 9559 . A . . END=9562 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,959 +20_10037292_10066351 9563 . T . . END=9563 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,1004 +20_10037292_10066351 9564 . T . . END=9564 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1041 +20_10037292_10066351 9565 . G . . END=9565 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,927 +20_10037292_10066351 9566 . T . . END=9567 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 9568 . A . . END=9568 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,887 +20_10037292_10066351 9569 . C . . END=9569 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 9570 . T . . END=9570 GT:DP:GQ:MIN_DP:PL 0/0:33:54:33:0,54,838 +20_10037292_10066351 9571 . C . . END=9571 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 9572 . T . . END=9572 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,963 +20_10037292_10066351 9573 . T . . END=9574 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 9575 . C . . END=9575 GT:DP:GQ:MIN_DP:PL 0/0:33:88:33:0,88,1021 +20_10037292_10066351 9576 . T . . END=9576 GT:DP:GQ:MIN_DP:PL 0/0:34:54:34:0,54,906 +20_10037292_10066351 9577 . C . . END=9578 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 9579 . T . . END=9579 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,994 +20_10037292_10066351 9580 . A . . END=9580 GT:DP:GQ:MIN_DP:PL 0/0:33:72:33:0,72,872 +20_10037292_10066351 9581 . C . . END=9587 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20_10037292_10066351 9588 . C . . END=9589 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,862 +20_10037292_10066351 9590 . C . . END=9593 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 9594 . T . . END=9607 GT:DP:GQ:MIN_DP:PL 0/0:38:99:34:0,99,956 +20_10037292_10066351 9608 . A . . END=9608 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1158 +20_10037292_10066351 9609 . C . . END=9646 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,107,1228 +20_10037292_10066351 9647 . G . . END=9647 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1214 +20_10037292_10066351 9648 . A . . END=9650 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,114,1710 +20_10037292_10066351 9651 . T . . END=9651 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1301 +20_10037292_10066351 9652 . G . . END=9659 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,114,1710 +20_10037292_10066351 9660 . A . . END=9660 GT:DP:GQ:MIN_DP:PL 0/0:40:98:40:0,98,1230 +20_10037292_10066351 9661 . T . . END=9687 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,102,1188 +20_10037292_10066351 9688 . A . . END=9688 GT:DP:GQ:MIN_DP:PL 0/0:42:82:42:0,82,1182 +20_10037292_10066351 9689 . C . . END=9700 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,117,1755 +20_10037292_10066351 9701 . A . . END=9701 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1221 +20_10037292_10066351 9702 . C . . END=9711 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,107,1235 +20_10037292_10066351 9712 . C . . END=9712 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1180 +20_10037292_10066351 9713 . A . . END=9736 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,102,1195 +20_10037292_10066351 9737 . T . . END=9745 GT:DP:GQ:MIN_DP:PL 0/0:39:90:37:0,90,1350 +20_10037292_10066351 9746 . T . . END=9748 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20_10037292_10066351 9749 . C . . END=9753 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 9754 . A . . END=9754 GT:DP:GQ:MIN_DP:PL 0/0:32:66:32:0,66,887 +20_10037292_10066351 9755 . A . . END=9755 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 9756 . T . . END=9757 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20_10037292_10066351 9758 . A . . END=9758 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 9759 . A . . END=9761 GT:DP:GQ:MIN_DP:PL 0/0:33:84:32:0,84,1260 +20_10037292_10066351 9762 . T . . END=9762 GT:DP:GQ:MIN_DP:PL 0/0:34:78:34:0,78,1064 +20_10037292_10066351 9763 . A . . END=9765 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 9766 . T . . END=9770 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1058 +20_10037292_10066351 9771 . A . . END=9771 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 9772 . A . . END=9772 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1019 +20_10037292_10066351 9773 . T . . END=9775 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20_10037292_10066351 9776 . C . . END=9777 GT:DP:GQ:MIN_DP:PL 0/0:36:77:35:0,77,1058 +20_10037292_10066351 9778 . G . . END=9781 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1350 +20_10037292_10066351 9782 . T . . END=9782 GT:DP:GQ:MIN_DP:PL 0/0:32:76:32:0,76,948 +20_10037292_10066351 9783 . T . . END=9783 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 9784 . C . . END=9784 GT:DP:GQ:MIN_DP:PL 0/0:31:66:31:0,66,973 +20_10037292_10066351 9785 . T . . END=9787 GT:DP:GQ:MIN_DP:PL 0/0:31:86:30:0,86,975 +20_10037292_10066351 9788 . A . . END=9789 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 9790 . A . . END=9792 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,955 +20_10037292_10066351 9793 . A . . END=9793 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 9794 . T . . END=9794 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20_10037292_10066351 9795 . A . . END=9796 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1015 +20_10037292_10066351 9797 . G . . END=9797 GT:DP:GQ:MIN_DP:PL 0/0:35:64:35:0,64,953 +20_10037292_10066351 9798 . A . . END=9801 GT:DP:GQ:MIN_DP:PL 0/0:36:91:35:0,91,1068 +20_10037292_10066351 9802 . T . . END=9809 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 9810 . A . . END=9810 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1101 +20_10037292_10066351 9811 . A . . END=9818 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20_10037292_10066351 9819 . T . . END=9820 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1112 +20_10037292_10066351 9821 . T . . END=9830 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20_10037292_10066351 9831 . A . . END=9831 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1115 +20_10037292_10066351 9832 . G . . END=9848 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,99,1122 +20_10037292_10066351 9849 . A . . END=9849 GT:DP:GQ:MIN_DP:PL 0/0:38:87:38:0,87,1030 +20_10037292_10066351 9850 . C . . END=9851 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,111,1173 +20_10037292_10066351 9852 . C . . END=9852 GT:DP:GQ:MIN_DP:PL 0/0:37:52:37:0,52,971 +20_10037292_10066351 9853 . C . . END=9855 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1135 +20_10037292_10066351 9856 . C . . END=9856 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1125 +20_10037292_10066351 9857 . C . . END=9859 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,102,1530 +20_10037292_10066351 12912 . G . . END=12912 GT:DP:GQ:MIN_DP:PL 0/0:39:80:39:0,80,1203 +20_10037292_10066351 12913 . A . . END=12913 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,114,1710 +20_10037292_10066351 12914 . G . . END=12914 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1239 +20_10037292_10066351 12915 . C . . END=12935 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1157 +20_10037292_10066351 12936 . T . . END=12936 GT:DP:GQ:MIN_DP:PL 0/0:41:76:41:0,76,1212 +20_10037292_10066351 12937 . T . . END=12942 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,105,1575 +20_10037292_10066351 12943 . A . . END=12943 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1236 +20_10037292_10066351 12944 . A . . END=12978 GT:DP:GQ:MIN_DP:PL 0/0:41:99:36:0,105,1107 +20_10037292_10066351 12979 . A . . END=12979 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1213 +20_10037292_10066351 12980 . G . . END=12983 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,108,1193 +20_10037292_10066351 12984 . G . . END=12984 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1260 +20_10037292_10066351 12985 . A . . END=13012 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,102,1146 +20_10037292_10066351 13013 . A . . END=13013 GT:DP:GQ:MIN_DP:PL 0/0:41:92:41:0,92,1181 +20_10037292_10066351 13014 . A . . END=13016 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1138 +20_10037292_10066351 13017 . C . . END=13017 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1020 +20_10037292_10066351 13018 . G . . END=13023 GT:DP:GQ:MIN_DP:PL 0/0:39:99:36:0,105,1575 +20_10037292_10066351 13024 . A . . END=13024 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,1028 +20_10037292_10066351 13025 . A . . END=13028 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,101,1192 +20_10037292_10066351 13029 . T . . END=13029 GT:DP:GQ:MIN_DP:PL 0/0:42:86:42:0,86,1160 +20_10037292_10066351 13030 . A . . END=13032 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,108,1620 +20_10037292_10066351 13033 . G . . END=13033 GT:DP:GQ:MIN_DP:PL 0/0:42:81:42:0,81,1210 +20_10037292_10066351 13034 . A . . END=13034 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,105,1575 +20_10037292_10066351 13035 . G . . END=13035 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1181 +20_10037292_10066351 13036 . T . . END=13054 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,99,1182 +20_10037292_10066351 13055 . T . . END=13055 GT:DP:GQ:MIN_DP:PL 0/0:36:97:36:0,97,1060 +20_10037292_10066351 13056 . C . . END=13057 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,108,1145 +20_10037292_10066351 13058 . A . . END=13058 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1067 +20_10037292_10066351 13059 . T . . END=13060 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,108,1124 +20_10037292_10066351 13061 . G . . END=13061 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1045 +20_10037292_10066351 13062 . G . . END=13062 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,107,1074 +20_10037292_10066351 13063 . T . . END=13063 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1106 +20_10037292_10066351 13064 . T . . END=13070 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,108,1620 +20_10037292_10066351 13071 . T . . END=13071 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1199 +20_10037292_10066351 13072 . T . . END=13078 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,104,1206 +20_10037292_10066351 13079 . A . . END=13079 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1440 +20_10037292_10066351 13080 . G . . END=13082 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,99,1485 +20_10037292_10066351 13083 . T . . END=13083 GT:DP:GQ:MIN_DP:PL 0/0:40:92:40:0,92,1186 +20_10037292_10066351 13084 . C . . END=13090 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,102,1207 +20_10037292_10066351 13091 . G . . END=13091 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1168 +20_10037292_10066351 13092 . T . . END=13092 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1137 +20_10037292_10066351 13093 . G . . END=13175 GT:DP:GQ:MIN_DP:PL 0/0:47:99:38:0,106,1209 +20_10037292_10066351 13176 . C . . END=13176 GT:DP:GQ:MIN_DP:PL 0/0:45:76:45:0,76,1292 +20_10037292_10066351 13177 . T . . END=13203 GT:DP:GQ:MIN_DP:PL 0/0:45:99:43:0,101,1297 +20_10037292_10066351 13204 . G . . END=13204 GT:DP:GQ:MIN_DP:PL 0/0:46:89:46:0,89,1350 +20_10037292_10066351 13205 . T . . END=13220 GT:DP:GQ:MIN_DP:PL 0/0:46:99:41:0,109,1372 +20_10037292_10066351 13221 . T . . END=13221 GT:DP:GQ:MIN_DP:PL 0/0:41:97:41:0,97,1139 +20_10037292_10066351 13222 . A . . END=13261 GT:DP:GQ:MIN_DP:PL 0/0:40:99:33:0,99,1021 +20_10037292_10066351 13262 . A . . END=13262 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1069 +20_10037292_10066351 13263 . A . . END=13266 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20_10037292_10066351 13267 . G . . END=13269 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1215 +20_10037292_10066351 13270 . A . . END=13283 GT:DP:GQ:MIN_DP:PL 0/0:34:72:27:0,72,1080 +20_10037292_10066351 13284 . G . . END=13284 GT:DP:GQ:MIN_DP:PL 0/0:28:56:28:0,56,767 +20_10037292_10066351 13285 . C . . END=13287 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +20_10037292_10066351 13288 . G . . END=13288 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20_10037292_10066351 13289 . T . . END=13289 GT:DP:GQ:MIN_DP:PL 0/0:29:65:29:0,65,809 +20_10037292_10066351 13290 . C . . END=13294 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,828 +20_10037292_10066351 13295 . T . . END=13306 GT:DP:GQ:MIN_DP:PL 0/0:27:78:26:0,78,767 +20_10037292_10066351 13307 . T . . END=13309 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,798 +20_10037292_10066351 13310 . T . . END=13312 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,890 +20_10037292_10066351 13313 . T . . END=13314 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1026 +20_10037292_10066351 13315 . T . . END=13321 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1018 +20_10037292_10066351 13322 . C . . END=13329 GT:DP:GQ:MIN_DP:PL 0/0:33:81:30:0,81,1215 +20_10037292_10066351 13330 . C . . END=13330 GT:DP:GQ:MIN_DP:PL 0/0:32:66:32:0,66,958 +20_10037292_10066351 13331 . A . . END=13344 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20_10037292_10066351 13345 . C . . END=13345 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 13346 . T . . END=13348 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20_10037292_10066351 13349 . G . . END=13349 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 13350 . A . . END=13352 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 13353 . T . . END=13355 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 13356 . C . . END=13356 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 13357 . T . . END=13360 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 13361 . A . . END=13371 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20_10037292_10066351 13372 . A . . END=13372 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,873 +20_10037292_10066351 13373 . A . . END=13377 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20_10037292_10066351 13378 . T . . END=13378 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,1125 +20_10037292_10066351 13379 . G . . END=13383 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 13384 . G . . END=13384 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,939 +20_10037292_10066351 13385 . T . . END=13392 GT:DP:GQ:MIN_DP:PL 0/0:31:81:29:0,81,987 +20_10037292_10066351 13393 . C . . END=13393 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 13394 . A . . END=13395 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 13396 . C . . END=13399 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20_10037292_10066351 13400 . T . . END=13404 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 13405 . T . . END=13405 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1033 +20_10037292_10066351 13406 . C . . END=13418 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1017 +20_10037292_10066351 13419 . G . . END=13419 GT:DP:GQ:MIN_DP:PL 0/0:35:86:35:0,86,1024 +20_10037292_10066351 13420 . C . . END=13428 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20_10037292_10066351 13429 . T . . END=13430 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1097 +20_10037292_10066351 13431 . G . . END=13433 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20_10037292_10066351 13434 . A . . END=13434 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,1012 +20_10037292_10066351 13435 . A . . END=13438 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20_10037292_10066351 13439 . G . . END=13439 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,934 +20_10037292_10066351 13440 . T . . END=13440 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20_10037292_10066351 13441 . T . . END=13441 GT:DP:GQ:MIN_DP:PL 0/0:35:92:35:0,92,996 +20_10037292_10066351 13442 . T . . END=13444 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20_10037292_10066351 13445 . C . . END=13449 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,966 +20_10037292_10066351 13450 . C . . END=13451 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 13452 . G . . END=13460 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1012 +20_10037292_10066351 13461 . T . . END=13461 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,987 +20_10037292_10066351 13462 . T . . END=13462 GT:DP:GQ:MIN_DP:PL 0/0:35:54:35:0,54,861 +20_10037292_10066351 13463 . C . . END=13463 GT:DP:GQ:MIN_DP:PL 0/0:33:32:33:0,32,865 +20_10037292_10066351 13464 . T . . END=13535 GT:DP:GQ:MIN_DP:PL 0/0:44:99:36:0,99,1095 +20_10037292_10066351 13536 . T C, 437.64 . BaseQRankSum=1.454;DP=45;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=162000,45;ReadPosRankSum=-1.613 GT:AD:DP:GQ:PL:SB 0/1:26,18,0:44:99:445,0,672,523,726,1249:15,11,11,7 +20_10037292_10066351 13537 . T . . END=13548 GT:DP:GQ:MIN_DP:PL 0/0:45:99:40:0,111,1665 +20_10037292_10066351 13549 . A . . END=13549 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1215 +20_10037292_10066351 13550 . G . . END=13554 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,100,1128 +20_10037292_10066351 13555 . A . . END=13556 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1079 +20_10037292_10066351 13557 . A . . END=13561 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20_10037292_10066351 13562 . C . . END=13562 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1093 +20_10037292_10066351 13563 . T . . END=13563 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20_10037292_10066351 13564 . G . . END=13564 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1104 +20_10037292_10066351 13565 . C . . END=13565 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20_10037292_10066351 13566 . C . . END=13566 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1134 +20_10037292_10066351 13567 . C . . END=13577 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1146 +20_10037292_10066351 13578 . T . . END=13578 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1063 +20_10037292_10066351 13579 . A . . END=13579 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 13580 . G . . END=13588 GT:DP:GQ:MIN_DP:PL 0/0:36:96:33:0,96,1440 +20_10037292_10066351 13589 . T . . END=13589 GT:DP:GQ:MIN_DP:PL 0/0:33:79:33:0,79,939 +20_10037292_10066351 13590 . G . . END=13590 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,991 +20_10037292_10066351 13591 . T . . END=13591 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,960 +20_10037292_10066351 13592 . C . . END=13592 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,966 +20_10037292_10066351 13593 . A . . END=13593 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 13594 . G . . END=13595 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,958 +20_10037292_10066351 13596 . T . . END=13596 GT:DP:GQ:MIN_DP:PL 0/0:35:75:35:0,75,994 +20_10037292_10066351 13597 . G . . END=13599 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 13600 . T . . END=13603 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20_10037292_10066351 13604 . T . . END=13604 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1031 +20_10037292_10066351 13605 . C . . END=13605 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 13606 . T . . END=13607 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20_10037292_10066351 13608 . A . . END=13610 GT:DP:GQ:MIN_DP:PL 0/0:36:83:35:0,83,982 +20_10037292_10066351 13611 . A . . END=13617 GT:DP:GQ:MIN_DP:PL 0/0:36:90:33:0,90,1350 +20_10037292_10066351 13618 . T . . END=13631 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +20_10037292_10066351 13632 . A . . END=13632 GT:DP:GQ:MIN_DP:PL 0/0:30:77:30:0,77,941 +20_10037292_10066351 13633 . G . . END=13639 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20_10037292_10066351 13640 . C . . END=13640 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20_10037292_10066351 13641 . A . . END=13654 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20_10037292_10066351 13655 . G . . END=13655 GT:DP:GQ:MIN_DP:PL 0/0:31:64:31:0,64,944 +20_10037292_10066351 13656 . C . . END=13657 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,980 +20_10037292_10066351 13658 . T . . END=13671 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,890 +20_10037292_10066351 13672 . T . . END=13684 GT:DP:GQ:MIN_DP:PL 0/0:34:83:32:0,83,982 +20_10037292_10066351 13685 . G . . END=13686 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 13687 . A . . END=13687 GT:DP:GQ:MIN_DP:PL 0/0:30:69:30:0,69,896 +20_10037292_10066351 13688 . A . . END=13703 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,879 +20_10037292_10066351 13704 . C . . END=13704 GT:DP:GQ:MIN_DP:PL 0/0:33:52:33:0,52,943 +20_10037292_10066351 13705 . C . . END=13707 GT:DP:GQ:MIN_DP:PL 0/0:33:93:31:0,93,874 +20_10037292_10066351 13708 . C . . END=13708 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20_10037292_10066351 13709 . C . . END=13709 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,983 +20_10037292_10066351 13710 . G . . END=13715 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1530 +20_10037292_10066351 13716 . T . . END=13716 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1076 +20_10037292_10066351 13717 . C . . END=13717 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20_10037292_10066351 13718 . A . . END=13718 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1070 +20_10037292_10066351 13719 . G . . END=13726 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,102,1091 +20_10037292_10066351 13727 . A . . END=13727 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1125 +20_10037292_10066351 13728 . A . . END=13757 GT:DP:GQ:MIN_DP:PL 0/0:40:99:36:0,99,1146 +20_10037292_10066351 13758 . A . . END=13758 GT:DP:GQ:MIN_DP:PL 0/0:36:61:36:0,61,1017 +20_10037292_10066351 13759 . T . . END=13767 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1019 +20_10037292_10066351 13768 . T . . END=13768 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 13769 . G . . END=13771 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20_10037292_10066351 13772 . T . . END=13776 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20_10037292_10066351 13777 . A . . END=13778 GT:DP:GQ:MIN_DP:PL 0/0:35:87:34:0,87,1305 +20_10037292_10066351 13779 . C . . END=13779 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,969 +20_10037292_10066351 13780 . A . . END=13797 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +20_10037292_10066351 13798 . T . . END=13802 GT:DP:GQ:MIN_DP:PL 0/0:29:75:29:0,75,1125 +20_10037292_10066351 13803 . C . . END=13804 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 13805 . G . . END=13805 GT:DP:GQ:MIN_DP:PL 0/0:30:71:30:0,71,951 +20_10037292_10066351 13806 . C . . END=13807 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20_10037292_10066351 13808 . T . . END=13815 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20_10037292_10066351 13816 . A . . END=13840 GT:DP:GQ:MIN_DP:PL 0/0:30:80:27:0,80,850 +20_10037292_10066351 13841 . A . . END=13843 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 13844 . A . . END=13847 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20_10037292_10066351 13848 . G . . END=13848 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 13849 . T . . END=13859 GT:DP:GQ:MIN_DP:PL 0/0:31:74:28:0,74,918 +20_10037292_10066351 13860 . T . . END=13862 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,835 +20_10037292_10066351 13863 . T . . END=13873 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +20_10037292_10066351 13874 . T . . END=13880 GT:DP:GQ:MIN_DP:PL 0/0:28:69:27:0,69,845 +20_10037292_10066351 13881 . A . . END=13881 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +20_10037292_10066351 13882 . C . . END=13882 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,1035 +20_10037292_10066351 13883 . C . . END=13883 GT:DP:GQ:MIN_DP:PL 0/0:25:58:25:0,58,750 +20_10037292_10066351 13884 . T . . END=13899 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,722 +20_10037292_10066351 13900 . A . . END=13900 GT:DP:GQ:MIN_DP:PL 0/0:24:58:24:0,58,739 +20_10037292_10066351 13901 . T . . END=13901 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,766 +20_10037292_10066351 13902 . A . . END=13902 GT:DP:GQ:MIN_DP:PL 0/0:24:66:24:0,66,990 +20_10037292_10066351 13903 . A . . END=13903 GT:DP:GQ:MIN_DP:PL 0/0:24:58:24:0,58,701 +20_10037292_10066351 13904 . A . . END=13905 GT:DP:GQ:MIN_DP:PL 0/0:24:66:24:0,66,990 +20_10037292_10066351 13906 . A . . END=13921 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,735 +20_10037292_10066351 13922 . G . . END=13922 GT:DP:GQ:MIN_DP:PL 0/0:26:60:26:0,60,737 +20_10037292_10066351 13923 . C . . END=13932 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,806 +20_10037292_10066351 13933 . T . . END=13933 GT:DP:GQ:MIN_DP:PL 0/0:26:52:26:0,52,811 +20_10037292_10066351 13934 . G . . END=13942 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,1125 +20_10037292_10066351 13943 . A . . END=13943 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20_10037292_10066351 13944 . C . . END=13946 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20_10037292_10066351 13947 . G . . END=13948 GT:DP:GQ:MIN_DP:PL 0/0:28:67:28:0,67,785 +20_10037292_10066351 13949 . A . . END=13952 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20_10037292_10066351 13953 . T . . END=13954 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,862 +20_10037292_10066351 13955 . G . . END=13957 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +20_10037292_10066351 13958 . A . . END=13958 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,843 +20_10037292_10066351 13959 . C . . END=13961 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +20_10037292_10066351 13962 . C . . END=13962 GT:DP:GQ:MIN_DP:PL 0/0:27:65:27:0,65,774 +20_10037292_10066351 13963 . T . . END=13963 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +20_10037292_10066351 13964 . G . . END=13973 GT:DP:GQ:MIN_DP:PL 0/0:26:66:25:0,66,798 +20_10037292_10066351 13974 . A . . END=13974 GT:DP:GQ:MIN_DP:PL 0/0:25:59:25:0,59,721 +20_10037292_10066351 13975 . G . . END=13976 GT:DP:GQ:MIN_DP:PL 0/0:25:66:24:0,66,990 +20_10037292_10066351 13977 . C . . END=13977 GT:DP:GQ:MIN_DP:PL 0/0:25:58:25:0,58,723 +20_10037292_10066351 13978 . T . . END=13985 GT:DP:GQ:MIN_DP:PL 0/0:25:66:24:0,66,990 +20_10037292_10066351 13986 . G . . END=13988 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,1080 +20_10037292_10066351 13989 . T . . END=13991 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 +20_10037292_10066351 13992 . A . . END=13992 GT:DP:GQ:MIN_DP:PL 0/0:25:55:25:0,55,697 +20_10037292_10066351 13993 . A . . END=13993 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20_10037292_10066351 13994 . T . . END=13994 GT:DP:GQ:MIN_DP:PL 0/0:25:62:25:0,62,748 +20_10037292_10066351 13995 . T . . END=14002 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,808 +20_10037292_10066351 14003 . A . . END=14003 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,742 +20_10037292_10066351 14004 . A . . END=14006 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20_10037292_10066351 14007 . C . . END=14013 GT:DP:GQ:MIN_DP:PL 0/0:31:84:29:0,84,1260 +20_10037292_10066351 14014 . G . . END=14020 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20_10037292_10066351 14021 . G . . END=14024 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 14025 . C . . END=14034 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20_10037292_10066351 14035 . A . . END=14041 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +20_10037292_10066351 14042 . G . . END=14044 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 14045 . G . . END=14046 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +20_10037292_10066351 14047 . A . . END=14049 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 14050 . G . . END=14051 GT:DP:GQ:MIN_DP:PL 0/0:31:80:31:0,80,933 +20_10037292_10066351 14052 . G . . END=14055 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 14056 . G . . END=14056 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,933 +20_10037292_10066351 14057 . T . . END=14061 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,938 +20_10037292_10066351 14062 . A . . END=14062 GT:DP:GQ:MIN_DP:PL 0/0:31:80:31:0,80,925 +20_10037292_10066351 14063 . G . . END=14064 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,876 +20_10037292_10066351 14065 . T . . END=14065 GT:DP:GQ:MIN_DP:PL 0/0:31:63:31:0,63,778 +20_10037292_10066351 14066 . G . . END=14070 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 14071 . A . . END=14084 GT:DP:GQ:MIN_DP:PL 0/0:28:72:26:0,72,1080 +20_10037292_10066351 14085 . C . . END=14085 GT:DP:GQ:MIN_DP:PL 0/0:27:51:27:0,51,814 +20_10037292_10066351 14086 . C . . END=14086 GT:DP:GQ:MIN_DP:PL 0/0:27:65:27:0,65,791 +20_10037292_10066351 14087 . A . . END=14087 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20_10037292_10066351 14088 . G . . END=14088 GT:DP:GQ:MIN_DP:PL 0/0:27:64:27:0,64,809 +20_10037292_10066351 14089 . C . . END=14095 GT:DP:GQ:MIN_DP:PL 0/0:26:75:26:0,75,796 +20_10037292_10066351 14096 . G . . END=14101 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 14102 . T . . END=14102 GT:DP:GQ:MIN_DP:PL 0/0:28:55:28:0,55,788 +20_10037292_10066351 14103 . C . . END=14112 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,879 +20_10037292_10066351 14113 . A . . END=14122 GT:DP:GQ:MIN_DP:PL 0/0:29:72:28:0,72,1080 +20_10037292_10066351 14123 . G . . END=14123 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,865 +20_10037292_10066351 14124 . C . . END=14129 GT:DP:GQ:MIN_DP:PL 0/0:27:72:24:0,72,686 +20_10037292_10066351 14130 . A . . END=14139 GT:DP:GQ:MIN_DP:PL 0/0:25:60:23:0,60,900 +20_10037292_10066351 14140 . A . . END=14141 GT:DP:GQ:MIN_DP:PL 0/0:24:57:23:0,57,855 +20_10037292_10066351 14142 . C . . END=14144 GT:DP:GQ:MIN_DP:PL 0/0:22:54:21:0,54,810 +20_10037292_10066351 14145 . T . . END=14146 GT:DP:GQ:MIN_DP:PL 0/0:21:51:21:0,51,765 +20_10037292_10066351 14147 . A . . END=14150 GT:DP:GQ:MIN_DP:PL 0/0:22:54:21:0,54,810 +20_10037292_10066351 14151 . T . . END=14154 GT:DP:GQ:MIN_DP:PL 0/0:20:51:19:0,51,765 +20_10037292_10066351 14155 . T . . END=14155 GT:DP:GQ:MIN_DP:PL 0/0:21:50:21:0,50,612 +20_10037292_10066351 14156 . T C, 183.64 . BaseQRankSum=0.703;DP=20;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=72000,20;ReadPosRankSum=-0.193 GT:AD:DP:GQ:PL:SB 0/1:12,8,0:20:99:191,0,319,227,343,570:5,7,5,3 +20_10037292_10066351 14157 . T . . END=14158 GT:DP:GQ:MIN_DP:PL 0/0:21:51:20:0,51,765 +20_10037292_10066351 14159 . T . . END=14159 GT:DP:GQ:MIN_DP:PL 0/0:20:48:20:0,48,720 +20_10037292_10066351 14160 . C . . END=14160 GT:DP:GQ:MIN_DP:PL 0/0:20:46:20:0,46,579 +20_10037292_10066351 14161 . C . . END=14161 GT:DP:GQ:MIN_DP:PL 0/0:20:51:20:0,51,765 +20_10037292_10066351 14162 . C . . END=14162 GT:DP:GQ:MIN_DP:PL 0/0:20:54:20:0,54,810 +20_10037292_10066351 14163 . C . . END=14164 GT:DP:GQ:MIN_DP:PL 0/0:22:57:22:0,57,855 +20_10037292_10066351 14165 . T . . END=14169 GT:DP:GQ:MIN_DP:PL 0/0:22:60:21:0,60,900 +20_10037292_10066351 14170 . C . . END=14170 GT:DP:GQ:MIN_DP:PL 0/0:22:48:22:0,48,666 +20_10037292_10066351 14171 . A . . END=14172 GT:DP:GQ:MIN_DP:PL 0/0:22:63:22:0,63,945 +20_10037292_10066351 14173 . T . . END=14173 GT:DP:GQ:MIN_DP:PL 0/0:24:55:24:0,55,714 +20_10037292_10066351 14174 . C . . END=14174 GT:DP:GQ:MIN_DP:PL 0/0:25:61:25:0,61,767 +20_10037292_10066351 14175 . A . . END=14176 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,785 +20_10037292_10066351 14177 . C . . END=14178 GT:DP:GQ:MIN_DP:PL 0/0:26:60:26:0,60,792 +20_10037292_10066351 14179 . C . . END=14187 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,778 +20_10037292_10066351 14188 . C . . END=14188 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 +20_10037292_10066351 14189 . C . . END=14192 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,1080 +20_10037292_10066351 14193 . T . . END=14197 GT:DP:GQ:MIN_DP:PL 0/0:25:60:25:0,60,715 +20_10037292_10066351 14198 . A . . END=14209 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,750 +20_10037292_10066351 14210 . A . . END=14211 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,824 +20_10037292_10066351 14212 . G . . END=14212 GT:DP:GQ:MIN_DP:PL 0/0:27:64:27:0,64,802 +20_10037292_10066351 14213 . G . . END=14214 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,862 +20_10037292_10066351 14215 . G . . END=14217 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,933 +20_10037292_10066351 14218 . T . . END=14218 GT:DP:GQ:MIN_DP:PL 0/0:31:76:31:0,76,874 +20_10037292_10066351 14219 . T . . END=14219 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,972 +20_10037292_10066351 14220 . G . . END=14220 GT:DP:GQ:MIN_DP:PL 0/0:31:75:31:0,75,937 +20_10037292_10066351 14221 . G . . END=14222 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,936 +20_10037292_10066351 14223 . T . . END=14224 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1004 +20_10037292_10066351 14225 . G . . END=14228 GT:DP:GQ:MIN_DP:PL 0/0:33:93:31:0,93,930 +20_10037292_10066351 14229 . C . . END=14230 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,102,1530 +20_10037292_10066351 14231 . T . . END=14232 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 14233 . C . . END=14233 GT:DP:GQ:MIN_DP:PL 0/0:36:76:36:0,76,1043 +20_10037292_10066351 14234 . A . . END=14235 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20_10037292_10066351 14236 . G . . END=14236 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1041 +20_10037292_10066351 14237 . A . . END=14237 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20_10037292_10066351 14238 . T . . END=14238 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1030 +20_10037292_10066351 14239 . T . . END=14239 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 14240 . T . . END=14247 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1077 +20_10037292_10066351 14248 . G . . END=14248 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1046 +20_10037292_10066351 14249 . A . . END=14249 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,949 +20_10037292_10066351 14250 . T . . END=14250 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1084 +20_10037292_10066351 14251 . T . . END=14251 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,1020 +20_10037292_10066351 14252 . T . . END=14406 GT:DP:GQ:MIN_DP:PL 0/0:48:99:37:0,109,1169 +20_10037292_10066351 14407 . C . . END=14407 GT:DP:GQ:MIN_DP:PL 0/0:52:84:52:0,84,1360 +20_10037292_10066351 14408 . T . . END=14510 GT:DP:GQ:MIN_DP:PL 0/0:53:99:46:0,118,1386 +20_10037292_10066351 14511 . G . . END=14511 GT:DP:GQ:MIN_DP:PL 0/0:47:95:47:0,95,1387 +20_10037292_10066351 14512 . T . . END=14557 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,102,1196 +20_10037292_10066351 14558 . C . . END=14558 GT:DP:GQ:MIN_DP:PL 0/0:36:77:36:0,77,1030 +20_10037292_10066351 14559 . C . . END=14563 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1157 +20_10037292_10066351 14564 . A . . END=14565 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20_10037292_10066351 14566 . T . . END=14566 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20_10037292_10066351 14567 . G . . END=14571 GT:DP:GQ:MIN_DP:PL 0/0:38:93:37:0,93,1145 +20_10037292_10066351 14572 . T . . END=14573 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20_10037292_10066351 14574 . A . . END=14576 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1395 +20_10037292_10066351 14577 . G . . END=14577 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1065 +20_10037292_10066351 14578 . T . . END=14578 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20_10037292_10066351 14579 . G . . END=14579 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1029 +20_10037292_10066351 14580 . C . . END=14581 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20_10037292_10066351 14582 . C . . END=14583 GT:DP:GQ:MIN_DP:PL 0/0:33:73:33:0,73,985 +20_10037292_10066351 14584 . C . . END=14586 GT:DP:GQ:MIN_DP:PL 0/0:35:81:34:0,81,1215 +20_10037292_10066351 14587 . A . . END=14589 GT:DP:GQ:MIN_DP:PL 0/0:35:78:34:0,78,1170 +20_10037292_10066351 14590 . T . . END=14590 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,1035 +20_10037292_10066351 14591 . A . . END=14597 GT:DP:GQ:MIN_DP:PL 0/0:35:72:27:0,72,1024 +20_10037292_10066351 14598 . T . . END=14598 GT:DP:GQ:MIN_DP:PL 0/0:27:66:27:0,66,836 +20_10037292_10066351 14599 . A . . END=14601 GT:DP:GQ:MIN_DP:PL 0/0:28:75:26:0,75,854 +20_10037292_10066351 14602 . G . . END=14603 GT:DP:GQ:MIN_DP:PL 0/0:27:63:26:0,63,794 +20_10037292_10066351 14604 . C . . END=14612 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,1080 +20_10037292_10066351 14613 . T . . END=14613 GT:DP:GQ:MIN_DP:PL 0/0:26:60:26:0,60,803 +20_10037292_10066351 14614 . A . . END=14617 GT:DP:GQ:MIN_DP:PL 0/0:26:75:26:0,75,822 +20_10037292_10066351 14618 . A . . END=14619 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 14620 . T . . END=14620 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,845 +20_10037292_10066351 14621 . C . . END=14626 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20_10037292_10066351 14627 . T . . END=14627 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,946 +20_10037292_10066351 14628 . T . . END=14629 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,980 +20_10037292_10066351 14630 . A . . END=14634 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20_10037292_10066351 14635 . A . . END=14636 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 14637 . A . . END=14649 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 14650 . T . . END=14653 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 14654 . A . . END=14656 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 14657 . T . . END=14657 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,1040 +20_10037292_10066351 14658 . C . . END=14671 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 14672 . T . . END=14672 GT:DP:GQ:MIN_DP:PL 0/0:31:64:31:0,64,910 +20_10037292_10066351 14673 . T . . END=14673 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,1002 +20_10037292_10066351 14674 . G . . END=14674 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,839 +20_10037292_10066351 14675 . A . . END=14680 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,950 +20_10037292_10066351 14681 . A . . END=14681 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1051 +20_10037292_10066351 14682 . T . . END=14682 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,979 +20_10037292_10066351 14683 . C . . END=14683 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 14684 . T . . END=14684 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,1045 +20_10037292_10066351 14685 . T . . END=14685 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 14686 . A . . END=14686 GT:DP:GQ:MIN_DP:PL 0/0:34:79:34:0,79,1047 +20_10037292_10066351 14687 . A . . END=14689 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20_10037292_10066351 14690 . G . . END=14690 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,961 +20_10037292_10066351 14691 . T . . END=14691 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 14692 . T . . END=14692 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1090 +20_10037292_10066351 14693 . T . . END=14694 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20_10037292_10066351 14695 . A . . END=14695 GT:DP:GQ:MIN_DP:PL 0/0:35:62:35:0,62,1010 +20_10037292_10066351 14696 . A . . END=14696 GT:DP:GQ:MIN_DP:PL 0/0:38:88:38:0,88,1135 +20_10037292_10066351 14697 . A . . END=14698 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20_10037292_10066351 14699 . T . . END=14699 GT:DP:GQ:MIN_DP:PL 0/0:38:55:38:0,55,1027 +20_10037292_10066351 14700 . A . . END=14703 GT:DP:GQ:MIN_DP:PL 0/0:37:91:37:0,91,1149 +20_10037292_10066351 14704 . A . . END=14704 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1106 +20_10037292_10066351 14705 . A . . END=14706 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1193 +20_10037292_10066351 14707 . A . . END=14707 GT:DP:GQ:MIN_DP:PL 0/0:37:64:37:0,64,1029 +20_10037292_10066351 14708 . A . . END=14709 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20_10037292_10066351 14710 . T . . END=14712 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20_10037292_10066351 14713 . T . . END=14713 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1128 +20_10037292_10066351 14714 . T . . END=14718 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1192 +20_10037292_10066351 14719 . T . . END=14719 GT:DP:GQ:MIN_DP:PL 0/0:36:82:36:0,82,1087 +20_10037292_10066351 14720 . T . . END=14737 GT:DP:GQ:MIN_DP:PL 0/0:42:99:37:0,100,1160 diff --git a/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_mother.bam.g.vcf.idx b/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_mother.bam.g.vcf.idx new file mode 100644 index 0000000000000000000000000000000000000000..8b9fd43f8616b06dd55c0d2604d0fcb668d5206a GIT binary patch literal 811 zcmZwFOK8+U7zgmbt_8(cA6AeS@qr%H<~?~7LD${XT^}oKlckE7X0yq5TQ{kjMNfhk zJ!p%Hv??COgWyR|dJqvxRj7B5f*0>Sc#-<;4)q`shRpo(|GvzGIK}+LMgSQaQR8Yj zDvF|;hOJbbPGY}3<;OzPkK;yM7iU|^bQrW#vEA|;U5O)YBn=v29E4&$jFV;~NW~jT zYetN8u^K92kY zg~80_g$>;)&_nlpG3Sgbk|#@&YABY{ndrL8WGI%zER5M%$1U65IlFY)DR}4YYzeZV z3d}TQW&KkAjg32bFK<^MOQs-e%#bw2P)wDn44n?%de=&}T+EhoHe^}1n4npz$`oBU z7}Ni@%w2Fx4rFF(=xqGId)-YBiUWYX3wYd(0c%6R*`2`KUSRnFKk~>haA!N%O`+N`I>Qz6#bItw$Ob5rrTR&in@ZMq2snBe zc>0~&GWF{@2rSUJ`I6g5vY6hviEMnH+Yzc=q;)UVpIG8{iR`Ni3^CyO9{#KRB0EO? zSI8%S^IVSXo({|zz|S(zeIXmBy1V4hbZ#ZGdCDXf@Fw9_C7Y%7LmGo~+-5SsA95&} A6#xJL literal 0 HcmV?d00001 diff --git a/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_son.bam.g.vcf b/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_son.bam.g.vcf new file mode 100644 index 000000000..fc51fb3ed --- /dev/null +++ b/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_son.bam.g.vcf @@ -0,0 +1,1672 @@ +##fileformat=VCFv4.2 +##ALT= +##FILTER= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##FORMAT= +##GATKCommandLine= +##GVCFBlock0-1=minGQ=0(inclusive),maxGQ=1(exclusive) +##GVCFBlock1-2=minGQ=1(inclusive),maxGQ=2(exclusive) +##GVCFBlock10-11=minGQ=10(inclusive),maxGQ=11(exclusive) +##GVCFBlock11-12=minGQ=11(inclusive),maxGQ=12(exclusive) +##GVCFBlock12-13=minGQ=12(inclusive),maxGQ=13(exclusive) +##GVCFBlock13-14=minGQ=13(inclusive),maxGQ=14(exclusive) +##GVCFBlock14-15=minGQ=14(inclusive),maxGQ=15(exclusive) 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G . . END=3282 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,719 +20_10037292_10066351 3283 . T . . END=3283 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,833 +20_10037292_10066351 3284 . T . . END=3287 GT:DP:GQ:MIN_DP:PL 0/0:29:78:27:0,78,1170 +20_10037292_10066351 3288 . A . . END=3290 GT:DP:GQ:MIN_DP:PL 0/0:32:84:31:0,84,1260 +20_10037292_10066351 3291 . G . . END=3291 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,1023 +20_10037292_10066351 3292 . G . . END=3293 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 3294 . A . . END=3294 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,974 +20_10037292_10066351 3295 . A . . END=3297 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,986 +20_10037292_10066351 3298 . T . . END=3309 GT:DP:GQ:MIN_DP:PL 0/0:32:84:28:0,84,870 +20_10037292_10066351 3310 . A . . END=3310 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20_10037292_10066351 3311 . A . . END=3313 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +20_10037292_10066351 3314 . A . . END=3314 GT:DP:GQ:MIN_DP:PL 0/0:30:77:30:0,77,873 +20_10037292_10066351 3315 . C . . END=3315 GT:DP:GQ:MIN_DP:PL 0/0:30:69:30:0,69,894 +20_10037292_10066351 3316 . T . . END=3316 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 3317 . G . . END=3317 GT:DP:GQ:MIN_DP:PL 0/0:29:71:29:0,71,864 +20_10037292_10066351 3318 . T . . END=3318 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 3319 . C . . END=3319 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,945 +20_10037292_10066351 3320 . A . . END=3333 GT:DP:GQ:MIN_DP:PL 0/0:32:84:30:0,84,993 +20_10037292_10066351 3334 . A . . END=3334 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,979 +20_10037292_10066351 3335 . G . . END=3338 GT:DP:GQ:MIN_DP:PL 0/0:30:86:29:0,86,836 +20_10037292_10066351 3339 . C . . END=3341 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 3342 . C . . END=3342 GT:DP:GQ:MIN_DP:PL 0/0:31:62:31:0,62,870 +20_10037292_10066351 3343 . A . . END=3348 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,962 +20_10037292_10066351 3349 . A . . END=3349 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,1011 +20_10037292_10066351 3350 . G . . END=3351 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 3352 . A . . END=3352 GT:DP:GQ:MIN_DP:PL 0/0:36:87:36:0,87,1121 +20_10037292_10066351 3353 . G . . END=3361 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1163 +20_10037292_10066351 3362 . C . . END=3362 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1036 +20_10037292_10066351 3363 . A . . END=3364 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20_10037292_10066351 3365 . A . . END=3365 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1067 +20_10037292_10066351 3366 . C . . END=3369 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,108,1142 +20_10037292_10066351 3370 . C . . END=3370 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1138 +20_10037292_10066351 3371 . A . . END=3418 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,108,1248 +20_10037292_10066351 3419 . T . . END=3419 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1188 +20_10037292_10066351 3420 . T . . END=3436 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,99,1140 +20_10037292_10066351 3437 . T . . END=3437 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1118 +20_10037292_10066351 3438 . T . . END=3439 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,103,1164 +20_10037292_10066351 3440 . A . . END=3440 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1216 +20_10037292_10066351 3441 . T . . END=3444 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,105,1575 +20_10037292_10066351 3445 . G . . END=3446 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1100 +20_10037292_10066351 3447 . C . . END=3453 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20_10037292_10066351 3454 . G . . END=3458 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1043 +20_10037292_10066351 3459 . T . . END=3459 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1134 +20_10037292_10066351 3460 . T . . END=3460 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20_10037292_10066351 3461 . C . . END=3468 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,101,1112 +20_10037292_10066351 3469 . C . . END=3469 GT:DP:GQ:MIN_DP:PL 0/0:39:60:39:0,60,1079 +20_10037292_10066351 3470 . T . . END=3474 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,99,1485 +20_10037292_10066351 3475 . C . . END=3475 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1064 +20_10037292_10066351 3476 . T . . END=3478 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,102,1530 +20_10037292_10066351 3479 . T . . END=3479 GT:DP:GQ:MIN_DP:PL 0/0:44:57:44:0,57,1177 +20_10037292_10066351 3480 . C CT, 742.03 . DP=30;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=108000,30 GT:AD:DP:GQ:PL:SB 1/1:0,26,0:26:78:756,78,0,756,78,756:0,0,15,11 +20_10037292_10066351 3481 . T . . END=3486 GT:DP:GQ:MIN_DP:PL 0/0:28:72:26:0,72,1080 +20_10037292_10066351 3487 . T . . END=3487 GT:DP:GQ:MIN_DP:PL 0/0:26:69:26:0,69,1035 +20_10037292_10066351 3488 . T . . END=3489 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +20_10037292_10066351 3490 . C . . END=3490 GT:DP:GQ:MIN_DP:PL 0/0:30:58:30:0,58,818 +20_10037292_10066351 3491 . A . . END=3491 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 3492 . A . . END=3492 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,1125 +20_10037292_10066351 3493 . T . . END=3496 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 3497 . C . . END=3497 GT:DP:GQ:MIN_DP:PL 0/0:29:71:29:0,71,802 +20_10037292_10066351 3498 . A . . END=3498 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 3499 . C . . END=3499 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20_10037292_10066351 3500 . G . . END=3501 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20_10037292_10066351 3502 . A . . END=3512 GT:DP:GQ:MIN_DP:PL 0/0:28:72:26:0,72,1080 +20_10037292_10066351 3513 . A . . END=3513 GT:DP:GQ:MIN_DP:PL 0/0:26:62:26:0,62,772 +20_10037292_10066351 3514 . T . . END=3519 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,1080 +20_10037292_10066351 3520 . AT A, 760.03 . DP=28;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=100800,28 GT:AD:DP:GQ:PL:SB 1/1:0,26,0:26:78:774,78,0,774,78,774:0,0,15,11 +20_10037292_10066351 3522 . T . . END=3523 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,114,1710 +20_10037292_10066351 3524 . T . . END=3524 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1092 +20_10037292_10066351 3525 . T . . END=3529 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1194 +20_10037292_10066351 3530 . A . . END=3531 GT:DP:GQ:MIN_DP:PL 0/0:39:92:38:0,92,1099 +20_10037292_10066351 3532 . A . . END=3532 GT:DP:GQ:MIN_DP:PL 0/0:38:65:38:0,65,1022 +20_10037292_10066351 3533 . A . . END=3535 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20_10037292_10066351 3536 . G . . END=3536 GT:DP:GQ:MIN_DP:PL 0/0:39:67:39:0,67,996 +20_10037292_10066351 3537 . A . . END=3547 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,108,1620 +20_10037292_10066351 3548 . G . . END=3548 GT:DP:GQ:MIN_DP:PL 0/0:38:86:38:0,86,1042 +20_10037292_10066351 3549 . T . . END=3550 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1165 +20_10037292_10066351 3551 . A . . END=3551 GT:DP:GQ:MIN_DP:PL 0/0:38:94:38:0,94,1105 +20_10037292_10066351 3552 . A . . END=3552 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20_10037292_10066351 3553 . C . . END=3555 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1070 +20_10037292_10066351 3556 . C . . END=3562 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,100,1084 +20_10037292_10066351 3563 . C . . END=3563 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1080 +20_10037292_10066351 3564 . A . . END=3570 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,108,1206 +20_10037292_10066351 3571 . C . . END=3571 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1114 +20_10037292_10066351 3572 . A . . END=3576 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,102,1145 +20_10037292_10066351 3577 . G . . END=3577 GT:DP:GQ:MIN_DP:PL 0/0:41:83:41:0,83,1163 +20_10037292_10066351 3578 . A . . END=3579 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,112,1139 +20_10037292_10066351 3580 . T . . END=3580 GT:DP:GQ:MIN_DP:PL 0/0:43:94:43:0,94,1150 +20_10037292_10066351 3581 . T . . END=3593 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,100,1153 +20_10037292_10066351 3594 . C . . END=3595 GT:DP:GQ:MIN_DP:PL 0/0:40:94:39:0,94,1054 +20_10037292_10066351 3596 . T . . END=3596 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,109,1244 +20_10037292_10066351 3597 . C . . END=3597 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1101 +20_10037292_10066351 3598 . T . . END=3599 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,102,1530 +20_10037292_10066351 3600 . T . . END=3600 GT:DP:GQ:MIN_DP:PL 0/0:41:95:41:0,95,1208 +20_10037292_10066351 3601 . T . . END=3601 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,105,1575 +20_10037292_10066351 3602 . A . . END=3603 GT:DP:GQ:MIN_DP:PL 0/0:41:75:40:0,75,1125 +20_10037292_10066351 3604 . G . . END=3604 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,105,1575 +20_10037292_10066351 3605 . C . . END=3605 GT:DP:GQ:MIN_DP:PL 0/0:42:62:42:0,62,1050 +20_10037292_10066351 3606 . C . . END=3611 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,99,1485 +20_10037292_10066351 3612 . G . . END=3612 GT:DP:GQ:MIN_DP:PL 0/0:39:63:39:0,63,1081 +20_10037292_10066351 3613 . T . . END=3613 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,102,1530 +20_10037292_10066351 3614 . G . . END=3614 GT:DP:GQ:MIN_DP:PL 0/0:41:97:41:0,97,1152 +20_10037292_10066351 3615 . C . . END=3615 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,105,1575 +20_10037292_10066351 3616 . A . . END=3616 GT:DP:GQ:MIN_DP:PL 0/0:40:69:40:0,69,1125 +20_10037292_10066351 3617 . T . . END=3622 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1485 +20_10037292_10066351 3623 . T . . END=3623 GT:DP:GQ:MIN_DP:PL 0/0:37:82:37:0,82,1048 +20_10037292_10066351 3624 . A . . END=3625 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1152 +20_10037292_10066351 3626 . G . . END=3628 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,105,1121 +20_10037292_10066351 3629 . T . . END=3629 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1081 +20_10037292_10066351 3630 . C . . END=3630 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1015 +20_10037292_10066351 3631 . T . . END=3631 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 3632 . C . . END=3632 GT:DP:GQ:MIN_DP:PL 0/0:34:59:34:0,59,951 +20_10037292_10066351 3633 . T . . END=3633 GT:DP:GQ:MIN_DP:PL 0/0:35:91:35:0,91,1033 +20_10037292_10066351 3634 . C . . END=3634 GT:DP:GQ:MIN_DP:PL 0/0:35:68:35:0,68,974 +20_10037292_10066351 3635 . A . . END=3641 GT:DP:GQ:MIN_DP:PL 0/0:36:91:35:0,91,1085 +20_10037292_10066351 3642 . C . . END=3642 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,900 +20_10037292_10066351 3643 . G . . END=3651 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1171 +20_10037292_10066351 3652 . A . . END=3652 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1126 +20_10037292_10066351 3653 . G . . END=3667 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,99,1092 +20_10037292_10066351 3668 . A . . END=3668 GT:DP:GQ:MIN_DP:PL 0/0:44:76:44:0,76,1248 +20_10037292_10066351 3669 . T . . END=3672 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,120,1800 +20_10037292_10066351 3673 . T . . END=3673 GT:DP:GQ:MIN_DP:PL 0/0:42:97:42:0,97,1192 +20_10037292_10066351 3674 . G . . END=3674 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,101,1251 +20_10037292_10066351 3675 . A . . END=3675 GT:DP:GQ:MIN_DP:PL 0/0:42:88:42:0,88,1126 +20_10037292_10066351 3676 . A . . END=3683 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,113,1311 +20_10037292_10066351 3684 . C . . END=3684 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1257 +20_10037292_10066351 3685 . T . . END=3685 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +20_10037292_10066351 3686 . C . . END=3686 GT:DP:GQ:MIN_DP:PL 0/0:43:93:43:0,93,1225 +20_10037292_10066351 3687 . C . . END=3693 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,113,1254 +20_10037292_10066351 3694 . A . . END=3694 GT:DP:GQ:MIN_DP:PL 0/0:44:80:44:0,80,1185 +20_10037292_10066351 3695 . G . . END=3769 GT:DP:GQ:MIN_DP:PL 0/0:47:99:41:0,100,1196 +20_10037292_10066351 3770 . A . . END=3770 GT:DP:GQ:MIN_DP:PL 0/0:48:88:48:0,88,1268 +20_10037292_10066351 3771 . A . . END=3780 GT:DP:GQ:MIN_DP:PL 0/0:45:99:43:0,106,1300 +20_10037292_10066351 3781 . C . . END=3781 GT:DP:GQ:MIN_DP:PL 0/0:44:85:44:0,85,1222 +20_10037292_10066351 3782 . T . . END=3784 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,120,1800 +20_10037292_10066351 3785 . G . . END=3785 GT:DP:GQ:MIN_DP:PL 0/0:44:97:44:0,97,1329 +20_10037292_10066351 3786 . T . . END=3834 GT:DP:GQ:MIN_DP:PL 0/0:44:99:36:0,105,1125 +20_10037292_10066351 3835 . T . . END=3835 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1163 +20_10037292_10066351 3836 . C . . END=3836 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20_10037292_10066351 3837 . C . . END=3837 GT:DP:GQ:MIN_DP:PL 0/0:39:80:39:0,80,1117 +20_10037292_10066351 3838 . T . . END=3857 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,102,1041 +20_10037292_10066351 3858 . G . . END=3867 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20_10037292_10066351 3868 . T . . END=3868 GT:DP:GQ:MIN_DP:PL 0/0:32:83:32:0,83,911 +20_10037292_10066351 3869 . G . . END=3870 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20_10037292_10066351 3871 . A . . END=3871 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,927 +20_10037292_10066351 3872 . C . . END=3872 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 3873 . T . . END=3873 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,914 +20_10037292_10066351 3874 . G . . END=3877 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 3878 . A . . END=3883 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20_10037292_10066351 3884 . T . . END=3884 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20_10037292_10066351 3885 . T . . END=3885 GT:DP:GQ:MIN_DP:PL 0/0:35:79:35:0,79,1031 +20_10037292_10066351 3886 . C . . END=3890 GT:DP:GQ:MIN_DP:PL 0/0:35:81:34:0,81,1215 +20_10037292_10066351 3891 . G . . END=3893 GT:DP:GQ:MIN_DP:PL 0/0:38:90:35:0,90,1137 +20_10037292_10066351 3894 . C . . END=3899 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,99,1485 +20_10037292_10066351 3900 . C . . END=3900 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1069 +20_10037292_10066351 3901 . A . . END=3901 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20_10037292_10066351 3902 . A . . END=3902 GT:DP:GQ:MIN_DP:PL 0/0:38:54:38:0,54,1082 +20_10037292_10066351 3903 . G . . END=3906 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1530 +20_10037292_10066351 3907 . G . . END=3907 GT:DP:GQ:MIN_DP:PL 0/0:37:88:37:0,88,1135 +20_10037292_10066351 3908 . C . . END=3929 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1183 +20_10037292_10066351 3930 . T . . END=3936 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20_10037292_10066351 3937 . A . . END=3942 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 +20_10037292_10066351 3943 . T . . END=3948 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,960 +20_10037292_10066351 3949 . A . . END=3949 GT:DP:GQ:MIN_DP:PL 0/0:31:62:31:0,62,932 +20_10037292_10066351 3950 . G . . END=3955 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,959 +20_10037292_10066351 3956 . A . . END=3956 GT:DP:GQ:MIN_DP:PL 0/0:31:70:31:0,70,941 +20_10037292_10066351 3957 . C . . END=3965 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,920 +20_10037292_10066351 3966 . T . . END=3966 GT:DP:GQ:MIN_DP:PL 0/0:33:86:33:0,86,1005 +20_10037292_10066351 3967 . A . . END=3967 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 3968 . G . . END=3968 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,1014 +20_10037292_10066351 3969 . C . . END=3975 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20_10037292_10066351 3976 . A . . END=3980 GT:DP:GQ:MIN_DP:PL 0/0:32:87:30:0,87,1305 +20_10037292_10066351 3981 . A . . END=3983 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,917 +20_10037292_10066351 3984 . A . . END=3987 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +20_10037292_10066351 3988 . G . . END=3997 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,914 +20_10037292_10066351 3998 . T . . END=4000 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 4001 . A . . END=4001 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1030 +20_10037292_10066351 4002 . A . . END=4006 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1047 +20_10037292_10066351 4007 . C . . END=4007 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,1026 +20_10037292_10066351 4008 . A . . END=4010 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 4011 . T . . END=4011 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20_10037292_10066351 4012 . C T, 1092.06 . DP=36;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=129600,36 GT:AD:DP:GQ:PL:SB 1/1:0,35,0:35:99:1106,105,0,1106,105,1106:0,0,19,16 +20_10037292_10066351 4013 . G . . END=4013 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1305 +20_10037292_10066351 4014 . G . . END=4017 GT:DP:GQ:MIN_DP:PL 0/0:37:90:35:0,90,1350 +20_10037292_10066351 4018 . A . . END=4019 GT:DP:GQ:MIN_DP:PL 0/0:35:78:35:0,78,1170 +20_10037292_10066351 4020 . T . . END=4024 GT:DP:GQ:MIN_DP:PL 0/0:36:81:35:0,81,1215 +20_10037292_10066351 4025 . A . . END=4031 GT:DP:GQ:MIN_DP:PL 0/0:33:72:28:0,72,1080 +20_10037292_10066351 4032 . T . . END=4034 GT:DP:GQ:MIN_DP:PL 0/0:30:66:28:0,66,990 +20_10037292_10066351 4035 . G T, 0 . BaseQRankSum=-2.303;DP=30;ExcessHet=0.0000;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=0.000;RAW_MQandDP=108000,30;ReadPosRankSum=1.760 GT:AD:DP:GQ:PL:SB 0/0:25,2,0:27:60:0,60,734,74,739,753:14,11,1,1 +20_10037292_10066351 4036 . T . . END=4040 GT:DP:GQ:MIN_DP:PL 0/0:27:63:26:0,63,945 +20_10037292_10066351 4041 . T . . END=4043 GT:DP:GQ:MIN_DP:PL 0/0:29:75:27:0,75,1125 +20_10037292_10066351 4044 . T . . END=4050 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,862 +20_10037292_10066351 4051 . C . . END=4053 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20_10037292_10066351 4054 . G . . END=4061 GT:DP:GQ:MIN_DP:PL 0/0:31:81:28:0,81,1215 +20_10037292_10066351 4062 . A . . END=4066 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 4067 . C . . END=4067 GT:DP:GQ:MIN_DP:PL 0/0:32:73:32:0,73,937 +20_10037292_10066351 4068 . A . . END=4081 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,101,1033 +20_10037292_10066351 4082 . C . . END=4082 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1154 +20_10037292_10066351 4083 . T . . END=4106 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,102,1167 +20_10037292_10066351 4107 . G . . END=4107 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1286 +20_10037292_10066351 4108 . G . . END=4139 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,102,1071 +20_10037292_10066351 4140 . T . . END=4141 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1135 +20_10037292_10066351 4142 . A . . END=4177 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,100,1167 +20_10037292_10066351 4178 . A . . END=4186 GT:DP:GQ:MIN_DP:PL 0/0:38:90:36:0,90,1350 +20_10037292_10066351 4187 . T . . END=4191 GT:DP:GQ:MIN_DP:PL 0/0:37:87:33:0,87,1305 +20_10037292_10066351 4192 . G . . END=4192 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 4193 . A . . END=4193 GT:DP:GQ:MIN_DP:PL 0/0:35:94:35:0,94,1028 +20_10037292_10066351 4194 . C . . END=4194 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20_10037292_10066351 4195 . T . . END=4196 GT:DP:GQ:MIN_DP:PL 0/0:35:85:35:0,85,1066 +20_10037292_10066351 4197 . T . . END=4200 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1040 +20_10037292_10066351 4201 . G . . END=4201 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1117 +20_10037292_10066351 4202 . G . . END=4208 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 4209 . G . . END=4210 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1395 +20_10037292_10066351 4211 . C . . END=4212 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20_10037292_10066351 4213 . T . . END=4214 GT:DP:GQ:MIN_DP:PL 0/0:38:93:37:0,93,1395 +20_10037292_10066351 4215 . A . . END=4219 GT:DP:GQ:MIN_DP:PL 0/0:37:80:34:0,80,1158 +20_10037292_10066351 4220 . T . . END=4225 GT:DP:GQ:MIN_DP:PL 0/0:36:93:34:0,93,1395 +20_10037292_10066351 4226 . G . . END=4226 GT:DP:GQ:MIN_DP:PL 0/0:34:67:34:0,67,1017 +20_10037292_10066351 4227 . T . . END=4232 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 4233 . C . . END=4233 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1039 +20_10037292_10066351 4234 . C . . END=4235 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,101,1014 +20_10037292_10066351 4236 . A . . END=4236 GT:DP:GQ:MIN_DP:PL 0/0:35:76:35:0,76,1043 +20_10037292_10066351 4237 . T . . END=4376 GT:DP:GQ:MIN_DP:PL 0/0:46:99:36:0,105,1190 +20_10037292_10066351 4377 . T . . END=4377 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1282 +20_10037292_10066351 4378 . C . . END=4389 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,102,1234 +20_10037292_10066351 4390 . A . . END=4390 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1120 +20_10037292_10066351 4391 . T . . END=4391 GT:DP:GQ:MIN_DP:PL 0/0:37:82:37:0,82,1119 +20_10037292_10066351 4392 . C . . END=4393 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 4394 . A . . END=4398 GT:DP:GQ:MIN_DP:PL 0/0:36:90:35:0,90,1350 +20_10037292_10066351 4399 . A . . END=4399 GT:DP:GQ:MIN_DP:PL 0/0:36:88:36:0,88,1098 +20_10037292_10066351 4400 . T . . END=4403 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1070 +20_10037292_10066351 4404 . A . . END=4404 GT:DP:GQ:MIN_DP:PL 0/0:35:28:35:0,28,953 +20_10037292_10066351 4405 . A . . END=4405 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1215 +20_10037292_10066351 4406 . C . . END=4407 GT:DP:GQ:MIN_DP:PL 0/0:28:66:28:0,66,990 +20_10037292_10066351 4408 . T . . END=4408 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,1125 +20_10037292_10066351 4409 . A ATG,ATATG, 785.03 . DP=31;ExcessHet=0.0000;MLEAC=0,2,0;MLEAF=0.00,1.00,0.00;RAW_MQandDP=111600,31 GT:AD:DP:GQ:PL:SB 2/2:0,0,24,0:24:72:799,867,1161,72,87,0,850,1031,87,980:0,0,13,11 +20_10037292_10066351 4410 . T . . END=4410 GT:DP:GQ:MIN_DP:PL 0/0:35:81:35:0,81,1215 +20_10037292_10066351 4411 . G . . END=4411 GT:DP:GQ:MIN_DP:PL 0/0:34:0:34:0,0,738 +20_10037292_10066351 4412 . T . . END=4412 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20_10037292_10066351 4413 . G . . END=4416 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1350 +20_10037292_10066351 4417 . G . . END=4422 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20_10037292_10066351 4423 . G . . END=4423 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1108 +20_10037292_10066351 4424 . T . . END=4426 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 4427 . G . . END=4427 GT:DP:GQ:MIN_DP:PL 0/0:36:76:36:0,76,1091 +20_10037292_10066351 4428 . T . . END=4430 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1137 +20_10037292_10066351 4431 . G . . END=4435 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20_10037292_10066351 4436 . C . . END=4436 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1161 +20_10037292_10066351 4437 . A . . END=4473 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,108,1286 +20_10037292_10066351 4474 . A . . END=4474 GT:DP:GQ:MIN_DP:PL 0/0:45:87:45:0,87,1273 +20_10037292_10066351 4475 . G . . END=4479 GT:DP:GQ:MIN_DP:PL 0/0:46:99:44:0,103,1305 +20_10037292_10066351 4480 . G . . END=4480 GT:DP:GQ:MIN_DP:PL 0/0:46:89:46:0,89,1235 +20_10037292_10066351 4481 . G . . END=4502 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,106,1289 +20_10037292_10066351 4503 . G . . END=4503 GT:DP:GQ:MIN_DP:PL 0/0:43:67:43:0,67,1218 +20_10037292_10066351 4504 . A . . END=4592 GT:DP:GQ:MIN_DP:PL 0/0:50:99:42:0,99,1431 +20_10037292_10066351 4593 . G . . END=4593 GT:DP:GQ:MIN_DP:PL 0/0:40:96:40:0,96,1440 +20_10037292_10066351 4594 . T . . END=4604 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1485 +20_10037292_10066351 4605 . T . . END=4608 GT:DP:GQ:MIN_DP:PL 0/0:36:96:35:0,96,1440 +20_10037292_10066351 4609 . C . . END=4610 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 4611 . G . . END=4611 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20_10037292_10066351 4612 . G . . END=4615 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20_10037292_10066351 4616 . G . . END=4616 GT:DP:GQ:MIN_DP:PL 0/0:34:86:34:0,86,932 +20_10037292_10066351 4617 . T . . END=4622 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1485 +20_10037292_10066351 4623 . A . . END=4623 GT:DP:GQ:MIN_DP:PL 0/0:37:85:37:0,85,983 +20_10037292_10066351 4624 . C . . END=4630 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1094 +20_10037292_10066351 4631 . C . . END=4631 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1118 +20_10037292_10066351 4632 . C . . END=4639 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,101,1156 +20_10037292_10066351 4640 . A . . END=4640 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1108 +20_10037292_10066351 4641 . T . . END=4649 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1217 +20_10037292_10066351 4650 . T . . END=4655 GT:DP:GQ:MIN_DP:PL 0/0:38:93:36:0,93,1395 +20_10037292_10066351 4656 . C . . END=4666 GT:DP:GQ:MIN_DP:PL 0/0:33:84:30:0,84,1260 +20_10037292_10066351 4667 . C . . END=4674 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 4675 . A . . END=4682 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1021 +20_10037292_10066351 4683 . G . . END=4683 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1011 +20_10037292_10066351 4684 . A . . END=4684 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,108,1173 +20_10037292_10066351 4685 . G . . END=4685 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1121 +20_10037292_10066351 4686 . C . . END=4690 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,107,1013 +20_10037292_10066351 4691 . G . . END=4691 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,997 +20_10037292_10066351 4692 . C . . END=4704 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,101,1183 +20_10037292_10066351 4705 . A . . END=4706 GT:DP:GQ:MIN_DP:PL 0/0:39:91:39:0,91,1107 +20_10037292_10066351 4707 . A . . END=4718 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1185 +20_10037292_10066351 4719 . T . . END=4719 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1078 +20_10037292_10066351 4720 . A . . END=4724 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 4725 . C . . END=4725 GT:DP:GQ:MIN_DP:PL 0/0:40:81:40:0,81,1101 +20_10037292_10066351 4726 . A . . END=4733 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,101,1155 +20_10037292_10066351 4734 . C . . END=4734 GT:DP:GQ:MIN_DP:PL 0/0:39:91:39:0,91,1188 +20_10037292_10066351 4735 . T . . END=4735 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,103,1187 +20_10037292_10066351 4736 . A . . END=4736 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1108 +20_10037292_10066351 4737 . C . . END=4739 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,99,1188 +20_10037292_10066351 4740 . T . . END=4740 GT:DP:GQ:MIN_DP:PL 0/0:41:94:41:0,94,1197 +20_10037292_10066351 4741 . A . . END=4746 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,105,1575 +20_10037292_10066351 4747 . T . . END=4747 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1082 +20_10037292_10066351 4748 . T . . END=4748 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20_10037292_10066351 4749 . T . . END=4750 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1092 +20_10037292_10066351 4751 . T . . END=4752 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1170 +20_10037292_10066351 4753 . A . . END=4753 GT:DP:GQ:MIN_DP:PL 0/0:35:64:35:0,64,1027 +20_10037292_10066351 4754 . T . . END=4754 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20_10037292_10066351 4755 . A . . END=4755 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1112 +20_10037292_10066351 4756 . A . . END=4757 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,105,1575 +20_10037292_10066351 4758 . C . . END=4758 GT:DP:GQ:MIN_DP:PL 0/0:40:73:40:0,73,1197 +20_10037292_10066351 4759 . A . . END=4790 GT:DP:GQ:MIN_DP:PL 0/0:43:99:36:0,102,1163 +20_10037292_10066351 4791 . G . . END=4791 GT:DP:GQ:MIN_DP:PL 0/0:45:83:45:0,83,1299 +20_10037292_10066351 4792 . A . . END=4889 GT:DP:GQ:MIN_DP:PL 0/0:43:99:38:0,100,1187 +20_10037292_10066351 4890 . C . . END=4890 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1215 +20_10037292_10066351 4891 . T . . END=4895 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1575 +20_10037292_10066351 4896 . A . . END=4898 GT:DP:GQ:MIN_DP:PL 0/0:39:96:37:0,96,1440 +20_10037292_10066351 4899 . A . . END=4904 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20_10037292_10066351 4905 . A . . END=4912 GT:DP:GQ:MIN_DP:PL 0/0:35:91:34:0,91,1060 +20_10037292_10066351 4913 . T . . END=4926 GT:DP:GQ:MIN_DP:PL 0/0:33:84:29:0,84,1260 +20_10037292_10066351 4927 . C . . END=4927 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,819 +20_10037292_10066351 4928 . A . . END=4931 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 4932 . G . . END=4932 GT:DP:GQ:MIN_DP:PL 0/0:30:67:30:0,67,865 +20_10037292_10066351 4933 . A . . END=4933 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,910 +20_10037292_10066351 4934 . C . . END=4946 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20_10037292_10066351 4947 . A . . END=4949 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 4950 . A . . END=4950 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 4951 . T . . END=4957 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 4958 . G . . END=4958 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20_10037292_10066351 4959 . A . . END=4967 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1096 +20_10037292_10066351 4968 . A . . END=5026 GT:DP:GQ:MIN_DP:PL 0/0:43:99:36:0,102,1168 +20_10037292_10066351 5027 . C T, 1377.06 . DP=44;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=158400,44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1391,132,0,1391,132,1391:0,0,22,22 +20_10037292_10066351 5028 . C . . END=5204 GT:DP:GQ:MIN_DP:PL 0/0:48:99:38:0,99,1306 +20_10037292_10066351 5205 . A . . END=5205 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1100 +20_10037292_10066351 5206 . A . . END=5211 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,111,1107 +20_10037292_10066351 5212 . A . . END=5212 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1096 +20_10037292_10066351 5213 . T . . END=5226 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,101,1240 +20_10037292_10066351 5227 . G . . END=5227 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1272 +20_10037292_10066351 5228 . G . . END=5362 GT:DP:GQ:MIN_DP:PL 0/0:49:99:38:0,102,1184 +20_10037292_10066351 5363 . T . . END=5363 GT:DP:GQ:MIN_DP:PL 0/0:49:97:49:0,97,1426 +20_10037292_10066351 5364 . G . . END=5373 GT:DP:GQ:MIN_DP:PL 0/0:47:99:45:0,120,1800 +20_10037292_10066351 5374 . T . . END=5374 GT:DP:GQ:MIN_DP:PL 0/0:46:83:46:0,83,1368 +20_10037292_10066351 5375 . G . . END=5388 GT:DP:GQ:MIN_DP:PL 0/0:46:99:42:0,108,1301 +20_10037292_10066351 5389 . T . . END=5389 GT:DP:GQ:MIN_DP:PL 0/0:43:96:43:0,96,1317 +20_10037292_10066351 5390 . G . . END=5417 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,99,1206 +20_10037292_10066351 5418 . A . . END=5422 GT:DP:GQ:MIN_DP:PL 0/0:40:90:39:0,90,1112 +20_10037292_10066351 5423 . C . . END=5430 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,99,1485 +20_10037292_10066351 5431 . T . . END=5431 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1161 +20_10037292_10066351 5432 . T . . END=5439 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1121 +20_10037292_10066351 5440 . T . . END=5440 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20_10037292_10066351 5441 . G . . END=5441 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 5442 . C . . END=5449 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1171 +20_10037292_10066351 5450 . T . . END=5452 GT:DP:GQ:MIN_DP:PL 0/0:35:87:34:0,87,1305 +20_10037292_10066351 5453 . A . . END=5453 GT:DP:GQ:MIN_DP:PL 0/0:35:71:35:0,71,1064 +20_10037292_10066351 5454 . G . . END=5454 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1350 +20_10037292_10066351 5455 . A . . END=5455 GT:DP:GQ:MIN_DP:PL 0/0:34:79:34:0,79,968 +20_10037292_10066351 5456 . A . . END=5458 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20_10037292_10066351 5459 . A . . END=5459 GT:DP:GQ:MIN_DP:PL 0/0:34:81:34:0,81,1051 +20_10037292_10066351 5460 . A . . END=5460 GT:DP:GQ:MIN_DP:PL 0/0:32:76:32:0,76,1029 +20_10037292_10066351 5461 . G . . END=5461 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20_10037292_10066351 5462 . A . . END=5462 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,995 +20_10037292_10066351 5463 . T . . END=5464 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 5465 . A . . END=5465 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1030 +20_10037292_10066351 5466 . A . . END=5466 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1025 +20_10037292_10066351 5467 . T . . END=5467 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 5468 . G . . END=5468 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 5469 . A G, 862.06 . DP=29;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=104400,29 GT:AD:DP:GQ:PL:SB 1/1:0,29,0:29:86:876,86,0,876,86,876:0,0,14,15 +20_10037292_10066351 5470 . G . . END=5470 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,999 +20_10037292_10066351 5471 . C . . END=5471 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 5472 . A . . END=5472 GT:DP:GQ:MIN_DP:PL 0/0:34:80:34:0,80,1066 +20_10037292_10066351 5473 . A . . END=5473 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 5474 . G . . END=5477 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 5478 . A . . END=5478 GT:DP:GQ:MIN_DP:PL 0/0:34:71:34:0,71,1012 +20_10037292_10066351 5479 . G . . END=5479 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 5480 . C . . END=5483 GT:DP:GQ:MIN_DP:PL 0/0:34:96:33:0,96,1440 +20_10037292_10066351 5484 . G . . END=5484 GT:DP:GQ:MIN_DP:PL 0/0:33:65:33:0,65,1006 +20_10037292_10066351 5485 . A . . END=5492 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20_10037292_10066351 5493 . T . . END=5493 GT:DP:GQ:MIN_DP:PL 0/0:33:62:33:0,62,918 +20_10037292_10066351 5494 . T . . END=5494 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1017 +20_10037292_10066351 5495 . T . . END=5495 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1098 +20_10037292_10066351 7536 . C . . END=7536 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,103,1287 +20_10037292_10066351 7537 . C . . END=7537 GT:DP:GQ:MIN_DP:PL 0/0:43:85:43:0,85,1165 +20_10037292_10066351 7538 . C . . END=7552 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,102,1206 +20_10037292_10066351 7553 . A . . END=7553 GT:DP:GQ:MIN_DP:PL 0/0:43:98:43:0,98,1289 +20_10037292_10066351 7554 . A . . END=7555 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1162 +20_10037292_10066351 7556 . C . . END=7556 GT:DP:GQ:MIN_DP:PL 0/0:38:69:38:0,69,1008 +20_10037292_10066351 7557 . A G, 996.06 . DP=38;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=136800,38 GT:AD:DP:GQ:PL:SB 1/1:0,37,0:37:99:1010,108,0,1010,108,1010:0,0,16,21 +20_10037292_10066351 7558 . C . . END=7559 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20_10037292_10066351 7560 . C . . END=7560 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1020 +20_10037292_10066351 7561 . G . . END=7561 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +20_10037292_10066351 7562 . G . . END=7562 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1124 +20_10037292_10066351 7563 . T . . END=7566 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1575 +20_10037292_10066351 7567 . G . . END=7567 GT:DP:GQ:MIN_DP:PL 0/0:39:88:39:0,88,1137 +20_10037292_10066351 7568 . G . . END=7569 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,99,1485 +20_10037292_10066351 7570 . C . . END=7574 GT:DP:GQ:MIN_DP:PL 0/0:37:96:35:0,96,1440 +20_10037292_10066351 7575 . T . . END=7581 GT:DP:GQ:MIN_DP:PL 0/0:34:81:33:0,81,1215 +20_10037292_10066351 7582 . T . . END=7584 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,1170 +20_10037292_10066351 7585 . G . . END=7591 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20_10037292_10066351 7592 . T . . END=7602 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,772 +20_10037292_10066351 7603 . T . . END=7609 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20_10037292_10066351 7610 . G . . END=7610 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 7611 . A . . END=7611 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,994 +20_10037292_10066351 7612 . G . . END=7630 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,991 +20_10037292_10066351 7631 . T . . END=7635 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1054 +20_10037292_10066351 7636 . G . . END=7639 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 7640 . T . . END=7653 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1241 +20_10037292_10066351 7654 . G . . END=7654 GT:DP:GQ:MIN_DP:PL 0/0:41:82:41:0,82,1213 +20_10037292_10066351 7655 . C . . END=7658 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,115,1317 +20_10037292_10066351 7659 . G . . END=7659 GT:DP:GQ:MIN_DP:PL 0/0:43:90:43:0,90,1260 +20_10037292_10066351 7660 . T . . END=7675 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,101,1234 +20_10037292_10066351 7676 . G . . END=7676 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1157 +20_10037292_10066351 7677 . T . . END=7680 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,108,1219 +20_10037292_10066351 7681 . C . . END=7681 GT:DP:GQ:MIN_DP:PL 0/0:40:62:40:0,62,1083 +20_10037292_10066351 7682 . C . . END=7684 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,106,1189 +20_10037292_10066351 7685 . G . . END=7685 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1207 +20_10037292_10066351 7686 . T . . END=7694 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,100,1179 +20_10037292_10066351 7695 . G . . END=7695 GT:DP:GQ:MIN_DP:PL 0/0:41:97:41:0,97,1216 +20_10037292_10066351 7696 . T . . END=7696 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,115,1278 +20_10037292_10066351 7697 . A . . END=7697 GT:DP:GQ:MIN_DP:PL 0/0:42:85:42:0,85,1238 +20_10037292_10066351 7698 . C . . END=7724 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,99,1244 +20_10037292_10066351 7725 . C . . END=7725 GT:DP:GQ:MIN_DP:PL 0/0:44:91:44:0,91,1217 +20_10037292_10066351 7726 . A . . END=7785 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,100,1272 +20_10037292_10066351 7786 . G T, 1380.06 . DP=44;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=158400,44 GT:AD:DP:GQ:PL:SB 1/1:0,44,0:44:99:1394,132,0,1394,132,1394:0,0,22,22 +20_10037292_10066351 7787 . C . . END=7822 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,105,1208 +20_10037292_10066351 7823 . A . . END=7823 GT:DP:GQ:MIN_DP:PL 0/0:45:96:45:0,96,1299 +20_10037292_10066351 7824 . C . . END=7824 GT:DP:GQ:MIN_DP:PL 0/0:45:99:45:0,112,1315 +20_10037292_10066351 7825 . C . . END=7825 GT:DP:GQ:MIN_DP:PL 0/0:44:84:44:0,84,1272 +20_10037292_10066351 7826 . T . . END=7860 GT:DP:GQ:MIN_DP:PL 0/0:42:99:35:0,105,1100 +20_10037292_10066351 7861 . A . . END=7861 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1124 +20_10037292_10066351 7862 . G . . END=7863 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,110,1094 +20_10037292_10066351 7864 . G . . END=7864 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1019 +20_10037292_10066351 7865 . C . . END=7871 GT:DP:GQ:MIN_DP:PL 0/0:39:99:35:0,105,1050 +20_10037292_10066351 7872 . A . . END=7872 GT:DP:GQ:MIN_DP:PL 0/0:39:80:39:0,80,1192 +20_10037292_10066351 7873 . G . . END=7891 GT:DP:GQ:MIN_DP:PL 0/0:42:99:39:0,99,1187 +20_10037292_10066351 7892 . C . . END=7892 GT:DP:GQ:MIN_DP:PL 0/0:40:89:40:0,89,1259 +20_10037292_10066351 7893 . T . . END=7894 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1485 +20_10037292_10066351 7895 . C . . END=7895 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1213 +20_10037292_10066351 7896 . C . . END=7899 GT:DP:GQ:MIN_DP:PL 0/0:41:99:38:0,102,1530 +20_10037292_10066351 7900 . T . . END=7904 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1160 +20_10037292_10066351 7905 . C . . END=7908 GT:DP:GQ:MIN_DP:PL 0/0:35:87:34:0,87,1029 +20_10037292_10066351 7909 . T . . END=7909 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20_10037292_10066351 7910 . G . . END=7911 GT:DP:GQ:MIN_DP:PL 0/0:35:84:34:0,84,1260 +20_10037292_10066351 7912 . A . . END=7912 GT:DP:GQ:MIN_DP:PL 0/0:33:68:33:0,68,988 +20_10037292_10066351 7913 . C . . END=7931 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,864 +20_10037292_10066351 7932 . A . . END=7932 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,934 +20_10037292_10066351 7933 . T . . END=7933 GT:DP:GQ:MIN_DP:PL 0/0:30:73:30:0,73,906 +20_10037292_10066351 7934 . A . . END=7934 GT:DP:GQ:MIN_DP:PL 0/0:30:63:30:0,63,896 +20_10037292_10066351 7935 . G . . END=7935 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,992 +20_10037292_10066351 7936 . G . . END=7936 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,924 +20_10037292_10066351 7937 . G . . END=7937 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,976 +20_10037292_10066351 7938 . G . . END=7939 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 7940 . A . . END=7949 GT:DP:GQ:MIN_DP:PL 0/0:30:72:29:0,72,974 +20_10037292_10066351 7950 . A . . END=7950 GT:DP:GQ:MIN_DP:PL 0/0:31:57:31:0,57,888 +20_10037292_10066351 7951 . A . . END=7956 GT:DP:GQ:MIN_DP:PL 0/0:29:75:27:0,75,1125 +20_10037292_10066351 7957 . T . . END=7957 GT:DP:GQ:MIN_DP:PL 0/0:26:50:26:0,50,787 +20_10037292_10066351 7958 . G . . END=7958 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +20_10037292_10066351 7959 . G . . END=7959 GT:DP:GQ:MIN_DP:PL 0/0:25:42:25:0,42,696 +20_10037292_10066351 7960 . T . . END=7960 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20_10037292_10066351 7961 . A . . END=7961 GT:DP:GQ:MIN_DP:PL 0/0:27:68:27:0,68,824 +20_10037292_10066351 7962 . T . . END=7964 GT:DP:GQ:MIN_DP:PL 0/0:27:72:25:0,72,772 +20_10037292_10066351 7965 . T . . END=7965 GT:DP:GQ:MIN_DP:PL 0/0:27:68:27:0,68,803 +20_10037292_10066351 7966 . A . . END=7967 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +20_10037292_10066351 7968 . C . . END=7998 GT:DP:GQ:MIN_DP:PL 0/0:24:60:22:0,60,900 +20_10037292_10066351 7999 . T . . END=7999 GT:DP:GQ:MIN_DP:PL 0/0:25:58:25:0,58,730 +20_10037292_10066351 8000 . T . . END=8002 GT:DP:GQ:MIN_DP:PL 0/0:25:67:25:0,67,801 +20_10037292_10066351 8003 . C . . END=8005 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20_10037292_10066351 8006 . A . . END=8037 GT:DP:GQ:MIN_DP:PL 0/0:26:63:23:0,63,713 +20_10037292_10066351 8038 . G . . END=8038 GT:DP:GQ:MIN_DP:PL 0/0:23:57:23:0,57,723 +20_10037292_10066351 8039 . C . . END=8039 GT:DP:GQ:MIN_DP:PL 0/0:22:63:22:0,63,945 +20_10037292_10066351 8040 . A . . END=8040 GT:DP:GQ:MIN_DP:PL 0/0:22:44:22:0,44,674 +20_10037292_10066351 8041 . T . . END=8044 GT:DP:GQ:MIN_DP:PL 0/0:22:63:22:0,63,675 +20_10037292_10066351 8045 . G . . END=8045 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,771 +20_10037292_10066351 8046 . C . . END=8050 GT:DP:GQ:MIN_DP:PL 0/0:25:66:23:0,66,799 +20_10037292_10066351 8051 . C . . END=8061 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,1080 +20_10037292_10066351 8062 . C . . END=8063 GT:DP:GQ:MIN_DP:PL 0/0:25:69:25:0,69,1035 +20_10037292_10066351 8064 . G . . END=8064 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +20_10037292_10066351 8065 . C . . END=8065 GT:DP:GQ:MIN_DP:PL 0/0:25:61:25:0,61,727 +20_10037292_10066351 8066 . A . . END=8066 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20_10037292_10066351 8067 . A . . END=8067 GT:DP:GQ:MIN_DP:PL 0/0:25:58:25:0,58,727 +20_10037292_10066351 8068 . G . . END=8068 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20_10037292_10066351 8069 . T . . END=8069 GT:DP:GQ:MIN_DP:PL 0/0:26:64:26:0,64,763 +20_10037292_10066351 8070 . G . . END=8075 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20_10037292_10066351 8076 . A . . END=8076 GT:DP:GQ:MIN_DP:PL 0/0:25:63:25:0,63,723 +20_10037292_10066351 8077 . A . . END=8078 GT:DP:GQ:MIN_DP:PL 0/0:25:72:25:0,72,1080 +20_10037292_10066351 8079 . G . . END=8079 GT:DP:GQ:MIN_DP:PL 0/0:23:69:23:0,69,704 +20_10037292_10066351 8080 . C . . END=8086 GT:DP:GQ:MIN_DP:PL 0/0:25:72:24:0,72,671 +20_10037292_10066351 8087 . A . . END=8087 GT:DP:GQ:MIN_DP:PL 0/0:26:67:26:0,67,782 +20_10037292_10066351 8088 . C . . END=8088 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +20_10037292_10066351 8089 . A . . END=8089 GT:DP:GQ:MIN_DP:PL 0/0:26:63:26:0,63,783 +20_10037292_10066351 8090 . A . . END=8090 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +20_10037292_10066351 8091 . G . . END=8091 GT:DP:GQ:MIN_DP:PL 0/0:29:62:29:0,62,814 +20_10037292_10066351 8092 . A . . END=8095 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,785 +20_10037292_10066351 8096 . A . . END=8102 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,899 +20_10037292_10066351 8103 . A . . END=8104 GT:DP:GQ:MIN_DP:PL 0/0:31:63:30:0,63,870 +20_10037292_10066351 8105 . A . . END=8106 GT:DP:GQ:MIN_DP:PL 0/0:31:74:30:0,74,895 +20_10037292_10066351 8107 . G . . END=8113 GT:DP:GQ:MIN_DP:PL 0/0:31:87:29:0,87,890 +20_10037292_10066351 8114 . G . . END=8114 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,967 +20_10037292_10066351 8115 . A . . END=8115 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20_10037292_10066351 8116 . A . . END=8117 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,851 +20_10037292_10066351 8118 . A . . END=8119 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20_10037292_10066351 8120 . A . . END=8124 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20_10037292_10066351 8125 . A . . END=8125 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,969 +20_10037292_10066351 8126 . A . . END=8129 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,985 +20_10037292_10066351 8130 . C . . END=8131 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 8132 . C . . END=8134 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 8135 . C . . END=8142 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20_10037292_10066351 8143 . G . . END=8151 GT:DP:GQ:MIN_DP:PL 0/0:34:90:33:0,90,1350 +20_10037292_10066351 8152 . G . . END=8154 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1079 +20_10037292_10066351 8155 . A . . END=8155 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,1065 +20_10037292_10066351 8156 . A . . END=8160 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,105,1122 +20_10037292_10066351 8161 . A . . END=8161 GT:DP:GQ:MIN_DP:PL 0/0:37:95:37:0,95,1108 +20_10037292_10066351 8162 . T . . END=8179 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,101,1124 +20_10037292_10066351 8180 . G . . END=8180 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1035 +20_10037292_10066351 8181 . A . . END=8181 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1088 +20_10037292_10066351 8182 . T . . END=8182 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,995 +20_10037292_10066351 8183 . T . . END=8183 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,1016 +20_10037292_10066351 8184 . T . . END=8206 GT:DP:GQ:MIN_DP:PL 0/0:40:99:33:0,99,1046 +20_10037292_10066351 8207 . C . . END=8207 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1199 +20_10037292_10066351 8208 . C . . END=8247 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,111,1280 +20_10037292_10066351 8248 . T . . END=8248 GT:DP:GQ:MIN_DP:PL 0/0:40:91:40:0,91,1108 +20_10037292_10066351 8249 . T . . END=8325 GT:DP:GQ:MIN_DP:PL 0/0:44:99:39:0,99,1177 +20_10037292_10066351 8326 . G . . END=8326 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1231 +20_10037292_10066351 8327 . A . . END=8333 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,105,1575 +20_10037292_10066351 8334 . A . . END=8334 GT:DP:GQ:MIN_DP:PL 0/0:44:96:44:0,96,1440 +20_10037292_10066351 8335 . A . . END=8336 GT:DP:GQ:MIN_DP:PL 0/0:44:99:44:0,99,1485 +20_10037292_10066351 8337 . A . . END=8339 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1395 +20_10037292_10066351 8340 . T . . END=8349 GT:DP:GQ:MIN_DP:PL 0/0:40:99:37:0,99,1485 +20_10037292_10066351 8350 . G C, 1132.06 . DP=36;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=129600,36 GT:AD:DP:GQ:PL:SB 1/1:0,36,0:36:99:1146,108,0,1146,108,1146:0,0,16,20 +20_10037292_10066351 8351 . A . . END=8354 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,99,1160 +20_10037292_10066351 8355 . C . . END=8355 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1106 +20_10037292_10066351 8356 . T . . END=8391 GT:DP:GQ:MIN_DP:PL 0/0:37:99:33:0,99,1042 +20_10037292_10066351 8392 . T . . END=8392 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1069 +20_10037292_10066351 8393 . G . . END=8393 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 8394 . G . . END=8394 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 8395 . A . . END=8395 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1105 +20_10037292_10066351 8396 . G . . END=8396 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 8397 . G . . END=8397 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1084 +20_10037292_10066351 8398 . C . . END=8398 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 8399 . A . . END=8407 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1350 +20_10037292_10066351 8408 . T . . END=8408 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1047 +20_10037292_10066351 8409 . C . . END=8409 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 8410 . C . . END=8410 GT:DP:GQ:MIN_DP:PL 0/0:34:51:34:0,51,981 +20_10037292_10066351 8411 . C . . END=8411 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1305 +20_10037292_10066351 8412 . T . . END=8422 GT:DP:GQ:MIN_DP:PL 0/0:30:75:28:0,75,1125 +20_10037292_10066351 8423 . T . . END=8425 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 8426 . C . . END=8433 GT:DP:GQ:MIN_DP:PL 0/0:29:74:28:0,74,918 +20_10037292_10066351 8434 . T . . END=8434 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 8435 . G . . END=8439 GT:DP:GQ:MIN_DP:PL 0/0:30:72:28:0,72,1080 +20_10037292_10066351 8440 . C . . END=8440 GT:DP:GQ:MIN_DP:PL 0/0:27:68:27:0,68,857 +20_10037292_10066351 8441 . T . . END=8449 GT:DP:GQ:MIN_DP:PL 0/0:28:70:27:0,70,761 +20_10037292_10066351 8450 . C . . END=8450 GT:DP:GQ:MIN_DP:PL 0/0:27:68:27:0,68,821 +20_10037292_10066351 8451 . A . . END=8453 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,1125 +20_10037292_10066351 8454 . G . . END=8454 GT:DP:GQ:MIN_DP:PL 0/0:27:66:27:0,66,750 +20_10037292_10066351 8455 . T . . END=8456 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20_10037292_10066351 8457 . T . . END=8458 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,872 +20_10037292_10066351 8459 . G . . END=8460 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,912 +20_10037292_10066351 8461 . T . . END=8461 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,904 +20_10037292_10066351 8462 . C . . END=8462 GT:DP:GQ:MIN_DP:PL 0/0:31:61:31:0,61,846 +20_10037292_10066351 8463 . C . . END=8471 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,898 +20_10037292_10066351 8472 . C . . END=8472 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 8473 . T . . END=8473 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,911 +20_10037292_10066351 8474 . C . . END=8479 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,900 +20_10037292_10066351 8480 . G . . END=8480 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 8481 . G . . END=8483 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 8484 . T . . END=8484 GT:DP:GQ:MIN_DP:PL 0/0:31:68:31:0,68,872 +20_10037292_10066351 8485 . T . . END=8490 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,1125 +20_10037292_10066351 8491 . G . . END=8491 GT:DP:GQ:MIN_DP:PL 0/0:27:66:27:0,66,744 +20_10037292_10066351 8492 . T . . END=8493 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,1125 +20_10037292_10066351 8494 . T . . END=8494 GT:DP:GQ:MIN_DP:PL 0/0:28:54:28:0,54,774 +20_10037292_10066351 8495 . G . . END=8496 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,1125 +20_10037292_10066351 8497 . G . . END=8497 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,759 +20_10037292_10066351 8498 . C . . END=8498 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,781 +20_10037292_10066351 8499 . T . . END=8502 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,780 +20_10037292_10066351 8503 . A . . END=8503 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,780 +20_10037292_10066351 8504 . C . . END=8514 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,1215 +20_10037292_10066351 8515 . A . . END=8520 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20_10037292_10066351 8521 . C . . END=8525 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20_10037292_10066351 8526 . A . . END=8526 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1049 +20_10037292_10066351 8527 . T . . END=8586 GT:DP:GQ:MIN_DP:PL 0/0:38:99:35:0,99,1078 +20_10037292_10066351 8587 . C . . END=8587 GT:DP:GQ:MIN_DP:PL 0/0:39:68:39:0,68,1117 +20_10037292_10066351 8588 . C . . END=8589 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1575 +20_10037292_10066351 8590 . G . . END=8590 GT:DP:GQ:MIN_DP:PL 0/0:39:85:39:0,85,1204 +20_10037292_10066351 8591 . C . . END=8591 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20_10037292_10066351 8592 . T . . END=8592 GT:DP:GQ:MIN_DP:PL 0/0:37:84:37:0,84,1174 +20_10037292_10066351 8593 . G . . END=8594 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,105,1085 +20_10037292_10066351 8595 . T . . END=8595 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,1078 +20_10037292_10066351 8596 . C . . END=8596 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 8597 . C . . END=8599 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 8600 . T . . END=8600 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20_10037292_10066351 8601 . G . . END=8601 GT:DP:GQ:MIN_DP:PL 0/0:36:82:36:0,82,1089 +20_10037292_10066351 8602 . A . . END=8604 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20_10037292_10066351 8605 . A . . END=8615 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20_10037292_10066351 8616 . A . . END=8616 GT:DP:GQ:MIN_DP:PL 0/0:35:76:35:0,76,992 +20_10037292_10066351 8617 . C . . END=8621 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1172 +20_10037292_10066351 8622 . A . . END=8622 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1142 +20_10037292_10066351 8623 . A . . END=8626 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,108,1161 +20_10037292_10066351 8627 . T . . END=8627 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1107 +20_10037292_10066351 8628 . C . . END=8633 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,111,1183 +20_10037292_10066351 8634 . T . . END=8634 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1029 +20_10037292_10066351 8635 . G . . END=8638 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,101,1091 +20_10037292_10066351 8639 . C . . END=8640 GT:DP:GQ:MIN_DP:PL 0/0:39:87:38:0,87,1121 +20_10037292_10066351 8641 . A . . END=8646 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,102,1530 +20_10037292_10066351 8647 . T . . END=8647 GT:DP:GQ:MIN_DP:PL 0/0:38:85:38:0,85,1107 +20_10037292_10066351 8648 . T . . END=8648 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20_10037292_10066351 8649 . T . . END=8649 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1060 +20_10037292_10066351 8650 . C . . END=8650 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1122 +20_10037292_10066351 8651 . T . . END=8652 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20_10037292_10066351 8653 . C . . END=8654 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1051 +20_10037292_10066351 8655 . C . . END=8656 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20_10037292_10066351 8657 . C . . END=8657 GT:DP:GQ:MIN_DP:PL 0/0:35:73:35:0,73,997 +20_10037292_10066351 8658 . C . . END=8658 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 8659 . A . . END=8659 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 8660 . G . . END=8660 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,990 +20_10037292_10066351 8661 . T . . END=8662 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1018 +20_10037292_10066351 8663 . A . . END=8667 GT:DP:GQ:MIN_DP:PL 0/0:38:93:36:0,93,1065 +20_10037292_10066351 8668 . A . . END=8679 GT:DP:GQ:MIN_DP:PL 0/0:32:82:31:0,82,918 +20_10037292_10066351 8680 . A . . END=8681 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 8682 . G . . END=8684 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 8685 . T . . END=8685 GT:DP:GQ:MIN_DP:PL 0/0:29:70:29:0,70,762 +20_10037292_10066351 8686 . C . . END=8687 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 8688 . G . . END=8688 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,872 +20_10037292_10066351 8689 . A . . END=8691 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,834 +20_10037292_10066351 8692 . G . . END=8698 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,868 +20_10037292_10066351 8699 . T . . END=8701 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 8702 . T . . END=8703 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 8704 . T . . END=8704 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 8705 . T . . END=8705 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20_10037292_10066351 8706 . G . . END=8706 GT:DP:GQ:MIN_DP:PL 0/0:35:77:35:0,77,957 +20_10037292_10066351 8707 . T . . END=8709 GT:DP:GQ:MIN_DP:PL 0/0:35:96:33:0,96,1440 +20_10037292_10066351 8710 . G . . END=8710 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,997 +20_10037292_10066351 8711 . C . . END=8712 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 8713 . C . . END=8714 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 8715 . T . . END=8718 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 8719 . T . . END=8721 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1045 +20_10037292_10066351 8722 . G . . END=8722 GT:DP:GQ:MIN_DP:PL 0/0:36:61:36:0,61,992 +20_10037292_10066351 8723 . G . . END=8727 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20_10037292_10066351 8728 . G . . END=8728 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,990 +20_10037292_10066351 8729 . A . . END=8729 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 8730 . G . . END=8730 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,969 +20_10037292_10066351 8731 . T . . END=8734 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,913 +20_10037292_10066351 8735 . T . . END=8739 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,975 +20_10037292_10066351 8740 . C . . END=8740 GT:DP:GQ:MIN_DP:PL 0/0:33:98:33:0,98,927 +20_10037292_10066351 8741 . C . . END=8743 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,967 +20_10037292_10066351 8744 . A . . END=8744 GT:DP:GQ:MIN_DP:PL 0/0:33:98:33:0,98,923 +20_10037292_10066351 8745 . A . . END=8745 GT:DP:GQ:MIN_DP:PL 0/0:33:72:33:0,72,890 +20_10037292_10066351 8746 . C . . END=8748 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 8749 . C . . END=8750 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,994 +20_10037292_10066351 8751 . G . . END=8759 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,103,1064 +20_10037292_10066351 8760 . T . . END=8760 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1017 +20_10037292_10066351 8761 . T . . END=8762 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,100,1096 +20_10037292_10066351 8763 . T . . END=8763 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1001 +20_10037292_10066351 8764 . A . . END=8765 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20_10037292_10066351 8766 . A . . END=8766 GT:DP:GQ:MIN_DP:PL 0/0:38:89:38:0,89,1145 +20_10037292_10066351 8767 . G . . END=8767 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1575 +20_10037292_10066351 8768 . G . . END=8768 GT:DP:GQ:MIN_DP:PL 0/0:39:86:39:0,86,1150 +20_10037292_10066351 8769 . T . . END=8769 GT:DP:GQ:MIN_DP:PL 0/0:39:77:39:0,77,999 +20_10037292_10066351 8770 . G . . END=8773 GT:DP:GQ:MIN_DP:PL 0/0:37:91:36:0,91,1016 +20_10037292_10066351 8774 . G . . END=8774 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20_10037292_10066351 8775 . C . . END=8775 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,998 +20_10037292_10066351 8776 . T . . END=8778 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,104,1072 +20_10037292_10066351 8779 . C . . END=8779 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1068 +20_10037292_10066351 8780 . A . . END=8781 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,113,1260 +20_10037292_10066351 8782 . G . . END=8782 GT:DP:GQ:MIN_DP:PL 0/0:42:59:42:0,59,1161 +20_10037292_10066351 8783 . A . . END=8787 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,117,1755 +20_10037292_10066351 8788 . G . . END=8788 GT:DP:GQ:MIN_DP:PL 0/0:41:75:41:0,75,1144 +20_10037292_10066351 8789 . T . . END=8789 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,937 +20_10037292_10066351 8790 . A . . END=8790 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,117,1755 +20_10037292_10066351 8791 . G . . END=8791 GT:DP:GQ:MIN_DP:PL 0/0:43:55:43:0,55,1222 +20_10037292_10066351 8792 . G . . END=8792 GT:DP:GQ:MIN_DP:PL 0/0:42:90:42:0,90,1152 +20_10037292_10066351 8793 . G . . END=8794 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,113,1282 +20_10037292_10066351 8795 . T . . END=8795 GT:DP:GQ:MIN_DP:PL 0/0:40:95:40:0,95,1048 +20_10037292_10066351 8796 . T . . END=8800 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,99,1149 +20_10037292_10066351 8801 . T . . END=8802 GT:DP:GQ:MIN_DP:PL 0/0:44:92:44:0,92,1165 +20_10037292_10066351 8803 . C . . END=8804 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,109,1257 +20_10037292_10066351 8805 . C . . END=8805 GT:DP:GQ:MIN_DP:PL 0/0:43:80:43:0,80,1124 +20_10037292_10066351 8806 . C . . END=8813 GT:DP:GQ:MIN_DP:PL 0/0:45:99:42:0,101,1225 +20_10037292_10066351 8814 . G . . END=8814 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1205 +20_10037292_10066351 8815 . A . . END=8816 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,120,1800 +20_10037292_10066351 8817 . T . . END=8817 GT:DP:GQ:MIN_DP:PL 0/0:42:60:42:0,60,818 +20_10037292_10066351 8818 . T . . END=8818 GT:DP:GQ:MIN_DP:PL 0/0:41:81:41:0,81,952 +20_10037292_10066351 8819 . A . . END=8825 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,108,1206 +20_10037292_10066351 8826 . C . . END=8827 GT:DP:GQ:MIN_DP:PL 0/0:41:73:41:0,73,968 +20_10037292_10066351 8828 . G . . END=8832 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,104,1214 +20_10037292_10066351 8833 . G . . END=8833 GT:DP:GQ:MIN_DP:PL 0/0:39:79:39:0,79,1094 +20_10037292_10066351 8834 . G . . END=8834 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20_10037292_10066351 8835 . C . . END=8835 GT:DP:GQ:MIN_DP:PL 0/0:40:77:40:0,77,982 +20_10037292_10066351 8836 . A . . END=8836 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,120,1800 +20_10037292_10066351 8837 . G . . END=8837 GT:DP:GQ:MIN_DP:PL 0/0:43:83:43:0,83,1211 +20_10037292_10066351 8838 . A . . END=8840 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,120,1800 +20_10037292_10066351 8841 . G . . END=8841 GT:DP:GQ:MIN_DP:PL 0/0:42:64:42:0,64,1114 +20_10037292_10066351 8842 . A . . END=8842 GT:DP:GQ:MIN_DP:PL 0/0:42:95:42:0,95,1237 +20_10037292_10066351 8843 . A . . END=8845 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,114,1710 +20_10037292_10066351 8846 . G . . END=8846 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1210 +20_10037292_10066351 8847 . G . . END=8851 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,100,1214 +20_10037292_10066351 8852 . G . . END=8852 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1155 +20_10037292_10066351 8853 . G . . END=8853 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1143 +20_10037292_10066351 8854 . A . . END=8860 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,105,1575 +20_10037292_10066351 8861 . A . . END=8861 GT:DP:GQ:MIN_DP:PL 0/0:41:93:41:0,93,1254 +20_10037292_10066351 8862 . G . . END=8863 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,108,1620 +20_10037292_10066351 8864 . G . . END=8864 GT:DP:GQ:MIN_DP:PL 0/0:37:92:37:0,92,1056 +20_10037292_10066351 8865 . G . . END=8869 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,100,1130 +20_10037292_10066351 8870 . G . . END=8870 GT:DP:GQ:MIN_DP:PL 0/0:37:82:37:0,82,1042 +20_10037292_10066351 8871 . G . . END=8871 GT:DP:GQ:MIN_DP:PL 0/0:35:59:35:0,59,927 +20_10037292_10066351 8872 . A . . END=8880 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,99,1485 +20_10037292_10066351 8881 . A . . END=8885 GT:DP:GQ:MIN_DP:PL 0/0:38:81:37:0,81,1215 +20_10037292_10066351 8886 . AAGAAAGAAAG A, 951.03 . DP=30;ExcessHet=0.0000;MLEAC=2,0;MLEAF=1.00,0.00;RAW_MQandDP=108000,30 GT:AD:DP:GQ:PL:SB 1/1:0,22,0:22:67:965,67,0,965,67,965:0,0,20,2 +20_10037292_10066351 8897 . A . . END=8903 GT:DP:GQ:MIN_DP:PL 0/0:34:84:31:0,84,1260 +20_10037292_10066351 8904 . A . . END=8904 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,722 +20_10037292_10066351 8905 . A . . END=8905 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 8906 . G . . END=8906 GT:DP:GQ:MIN_DP:PL 0/0:32:4:32:0,4,766 +20_10037292_10066351 8907 . A . . END=8908 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 8909 . A . . END=8912 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,933 +20_10037292_10066351 8913 . A . . END=8913 GT:DP:GQ:MIN_DP:PL 0/0:31:82:31:0,82,920 +20_10037292_10066351 8914 . G . . END=8914 GT:DP:GQ:MIN_DP:PL 0/0:31:58:31:0,58,908 +20_10037292_10066351 8915 . A . . END=8916 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 8917 . A . . END=8917 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 8918 . G . . END=8918 GT:DP:GQ:MIN_DP:PL 0/0:31:61:31:0,61,873 +20_10037292_10066351 8919 . A . . END=8920 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1215 +20_10037292_10066351 8921 . A . . END=8921 GT:DP:GQ:MIN_DP:PL 0/0:32:68:32:0,68,889 +20_10037292_10066351 8922 . G . . END=8928 GT:DP:GQ:MIN_DP:PL 0/0:32:75:32:0,75,1125 +20_10037292_10066351 8929 . G . . END=8929 GT:DP:GQ:MIN_DP:PL 0/0:31:67:31:0,67,862 +20_10037292_10066351 8930 . A . . END=8936 GT:DP:GQ:MIN_DP:PL 0/0:33:71:30:0,71,953 +20_10037292_10066351 8937 . G . . END=8937 GT:DP:GQ:MIN_DP:PL 0/0:31:33:31:0,33,805 +20_10037292_10066351 8938 . A . . END=8938 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,1125 +20_10037292_10066351 8939 . G . . END=8939 GT:DP:GQ:MIN_DP:PL 0/0:28:38:28:0,38,740 +20_10037292_10066351 8940 . A . . END=8941 GT:DP:GQ:MIN_DP:PL 0/0:28:75:28:0,75,1125 +20_10037292_10066351 8942 . A . . END=8942 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,1035 +20_10037292_10066351 8943 . G . . END=8943 GT:DP:GQ:MIN_DP:PL 0/0:28:36:28:0,36,696 +20_10037292_10066351 8944 . A . . END=8947 GT:DP:GQ:MIN_DP:PL 0/0:27:65:27:0,65,727 +20_10037292_10066351 8948 . G . . END=8948 GT:DP:GQ:MIN_DP:PL 0/0:27:50:27:0,50,740 +20_10037292_10066351 8949 . G . . END=8949 GT:DP:GQ:MIN_DP:PL 0/0:27:41:27:0,41,632 +20_10037292_10066351 8950 . A . . END=8951 GT:DP:GQ:MIN_DP:PL 0/0:27:69:26:0,69,1035 +20_10037292_10066351 8952 . A . . END=8953 GT:DP:GQ:MIN_DP:PL 0/0:25:59:25:0,59,671 +20_10037292_10066351 8954 . A . . END=8954 GT:DP:GQ:MIN_DP:PL 0/0:25:66:25:0,66,990 +20_10037292_10066351 8955 . G . . END=8955 GT:DP:GQ:MIN_DP:PL 0/0:25:49:25:0,49,649 +20_10037292_10066351 8956 . A . . END=8957 GT:DP:GQ:MIN_DP:PL 0/0:27:65:26:0,65,792 +20_10037292_10066351 8958 . A . . END=8958 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +20_10037292_10066351 8959 . G . . END=8959 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,823 +20_10037292_10066351 8960 . A . . END=8962 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20_10037292_10066351 8963 . G . . END=8963 GT:DP:GQ:MIN_DP:PL 0/0:28:51:28:0,51,765 +20_10037292_10066351 8964 . A . . END=8964 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20_10037292_10066351 8965 . G . . END=8965 GT:DP:GQ:MIN_DP:PL 0/0:28:52:28:0,52,736 +20_10037292_10066351 8966 . A . . END=8967 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +20_10037292_10066351 8968 . G . . END=8968 GT:DP:GQ:MIN_DP:PL 0/0:28:68:28:0,68,792 +20_10037292_10066351 8969 . G . . END=8969 GT:DP:GQ:MIN_DP:PL 0/0:28:25:28:0,25,733 +20_10037292_10066351 8970 . A . . END=8974 GT:DP:GQ:MIN_DP:PL 0/0:28:72:28:0,72,1080 +20_10037292_10066351 8975 . G . . END=8975 GT:DP:GQ:MIN_DP:PL 0/0:27:64:27:0,64,755 +20_10037292_10066351 8976 . A . . END=8976 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20_10037292_10066351 8977 . G . . END=8977 GT:DP:GQ:MIN_DP:PL 0/0:29:54:29:0,54,794 +20_10037292_10066351 8978 . A . . END=8981 GT:DP:GQ:MIN_DP:PL 0/0:29:74:28:0,74,898 +20_10037292_10066351 8982 . A . . END=8982 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20_10037292_10066351 8983 . G . . END=8983 GT:DP:GQ:MIN_DP:PL 0/0:31:62:31:0,62,858 +20_10037292_10066351 8984 . A . . END=8988 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 8989 . G . . END=8989 GT:DP:GQ:MIN_DP:PL 0/0:31:63:31:0,63,829 +20_10037292_10066351 8990 . A . . END=8992 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 8993 . G . . END=8993 GT:DP:GQ:MIN_DP:PL 0/0:32:51:32:0,51,788 +20_10037292_10066351 8994 . A . . END=8994 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 8995 . G . . END=8995 GT:DP:GQ:MIN_DP:PL 0/0:32:64:32:0,64,844 +20_10037292_10066351 8996 . A . . END=8996 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 8997 . G . . END=8997 GT:DP:GQ:MIN_DP:PL 0/0:32:41:32:0,41,828 +20_10037292_10066351 8998 . A . . END=8998 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 8999 . G . . END=8999 GT:DP:GQ:MIN_DP:PL 0/0:30:58:30:0,58,719 +20_10037292_10066351 9000 . A . . END=9002 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +20_10037292_10066351 9003 . G . . END=9003 GT:DP:GQ:MIN_DP:PL 0/0:33:24:33:0,24,806 +20_10037292_10066351 9004 . A . . END=9006 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,1125 +20_10037292_10066351 9007 . G . . END=9007 GT:DP:GQ:MIN_DP:PL 0/0:34:32:34:0,32,867 +20_10037292_10066351 9008 . G . . END=9010 GT:DP:GQ:MIN_DP:PL 0/0:34:70:33:0,70,904 +20_10037292_10066351 9011 . G . . END=9011 GT:DP:GQ:MIN_DP:PL 0/0:34:48:34:0,48,883 +20_10037292_10066351 9012 . G . . END=9012 GT:DP:GQ:MIN_DP:PL 0/0:35:57:35:0,57,916 +20_10037292_10066351 9013 . A . . END=9014 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1215 +20_10037292_10066351 9015 . G . . END=9015 GT:DP:GQ:MIN_DP:PL 0/0:32:47:32:0,47,817 +20_10037292_10066351 9016 . G . . END=9018 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20_10037292_10066351 9019 . G . . END=9019 GT:DP:GQ:MIN_DP:PL 0/0:31:17:31:0,17,656 +20_10037292_10066351 9020 . A . . END=9023 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,830 +20_10037292_10066351 9024 . A . . END=9024 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,908 +20_10037292_10066351 9025 . T . . END=9025 GT:DP:GQ:MIN_DP:PL 0/0:31:0:31:0,0,565 +20_10037292_10066351 9026 . G . . END=9026 GT:DP:GQ:MIN_DP:PL 0/0:31:61:31:0,61,793 +20_10037292_10066351 9027 . A . . END=9028 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,910 +20_10037292_10066351 9029 . G . . END=9029 GT:DP:GQ:MIN_DP:PL 0/0:31:35:31:0,35,751 +20_10037292_10066351 9030 . G . . END=9030 GT:DP:GQ:MIN_DP:PL 0/0:31:58:31:0,58,788 +20_10037292_10066351 9031 . G . . END=9031 GT:DP:GQ:MIN_DP:PL 0/0:31:48:31:0,48,740 +20_10037292_10066351 9032 . A . . END=9032 GT:DP:GQ:MIN_DP:PL 0/0:31:93:31:0,93,957 +20_10037292_10066351 9033 . G . . END=9033 GT:DP:GQ:MIN_DP:PL 0/0:31:7:31:0,7,679 +20_10037292_10066351 9034 . G . . END=9034 GT:DP:GQ:MIN_DP:PL 0/0:30:47:30:0,47,734 +20_10037292_10066351 9035 . A . . END=9035 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20_10037292_10066351 9036 . A . . END=9036 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20_10037292_10066351 9037 . G . . END=9037 GT:DP:GQ:MIN_DP:PL 0/0:31:18:31:0,18,704 +20_10037292_10066351 9038 . G . . END=9038 GT:DP:GQ:MIN_DP:PL 0/0:30:8:30:0,8,670 +20_10037292_10066351 9039 . A . . END=9043 GT:DP:GQ:MIN_DP:PL 0/0:32:81:30:0,81,1215 +20_10037292_10066351 9044 . G . . END=9044 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,924 +20_10037292_10066351 9045 . G . . END=9046 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20_10037292_10066351 9047 . G . . END=9047 GT:DP:GQ:MIN_DP:PL 0/0:28:62:28:0,62,781 +20_10037292_10066351 9048 . A . . END=9048 GT:DP:GQ:MIN_DP:PL 0/0:29:76:29:0,76,828 +20_10037292_10066351 9049 . C . . END=9049 GT:DP:GQ:MIN_DP:PL 0/0:29:59:29:0,59,696 +20_10037292_10066351 9050 . A . . END=9050 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20_10037292_10066351 9051 . G . . END=9051 GT:DP:GQ:MIN_DP:PL 0/0:29:68:29:0,68,812 +20_10037292_10066351 9052 . G . . END=9052 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 9053 . A . . END=9053 GT:DP:GQ:MIN_DP:PL 0/0:31:72:31:0,72,916 +20_10037292_10066351 9054 . A . . END=9054 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 9055 . G . . END=9055 GT:DP:GQ:MIN_DP:PL 0/0:31:74:31:0,74,853 +20_10037292_10066351 9056 . G . . END=9056 GT:DP:GQ:MIN_DP:PL 0/0:32:56:32:0,56,834 +20_10037292_10066351 9057 . A . . END=9058 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20_10037292_10066351 9059 . G . . END=9059 GT:DP:GQ:MIN_DP:PL 0/0:35:49:35:0,49,882 +20_10037292_10066351 9060 . A . . END=9062 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 9063 . G . . END=9063 GT:DP:GQ:MIN_DP:PL 0/0:35:71:35:0,71,966 +20_10037292_10066351 9064 . A . . END=9066 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 9067 . A . . END=9067 GT:DP:GQ:MIN_DP:PL 0/0:37:97:37:0,97,1111 +20_10037292_10066351 9068 . A . . END=9068 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,103,1210 +20_10037292_10066351 9069 . G . . END=9070 GT:DP:GQ:MIN_DP:PL 0/0:38:95:37:0,95,1130 +20_10037292_10066351 9071 . A . . END=9071 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20_10037292_10066351 9072 . G . . END=9072 GT:DP:GQ:MIN_DP:PL 0/0:39:72:39:0,72,1096 +20_10037292_10066351 9073 . A . . END=9076 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1575 +20_10037292_10066351 9077 . A . . END=9077 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1122 +20_10037292_10066351 9078 . A . . END=9078 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,102,1530 +20_10037292_10066351 9079 . G . . END=9079 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1129 +20_10037292_10066351 9080 . A . . END=9081 GT:DP:GQ:MIN_DP:PL 0/0:37:94:36:0,94,1155 +20_10037292_10066351 9082 . A . . END=9082 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20_10037292_10066351 9083 . G . . END=9084 GT:DP:GQ:MIN_DP:PL 0/0:38:97:37:0,97,1128 +20_10037292_10066351 9085 . G . . END=9086 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,104,1191 +20_10037292_10066351 9087 . A . . END=9087 GT:DP:GQ:MIN_DP:PL 0/0:41:96:41:0,96,1178 +20_10037292_10066351 9088 . A . . END=9089 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20_10037292_10066351 9090 . A . . END=9090 GT:DP:GQ:MIN_DP:PL 0/0:40:75:40:0,75,1127 +20_10037292_10066351 9091 . A . . END=9093 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,114,1710 +20_10037292_10066351 9094 . G . . END=9094 GT:DP:GQ:MIN_DP:PL 0/0:40:70:40:0,70,1129 +20_10037292_10066351 9095 . A . . END=9095 GT:DP:GQ:MIN_DP:PL 0/0:40:87:40:0,87,1152 +20_10037292_10066351 9096 . A . . END=9097 GT:DP:GQ:MIN_DP:PL 0/0:40:73:40:0,73,1129 +20_10037292_10066351 9098 . G . . END=9099 GT:DP:GQ:MIN_DP:PL 0/0:40:88:39:0,88,1119 +20_10037292_10066351 9100 . A . . END=9100 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20_10037292_10066351 9101 . A . . END=9102 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,99,1485 +20_10037292_10066351 9103 . A . . END=9103 GT:DP:GQ:MIN_DP:PL 0/0:39:90:39:0,90,1107 +20_10037292_10066351 9104 . A . . END=9109 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,99,1485 +20_10037292_10066351 9110 . G . . END=9110 GT:DP:GQ:MIN_DP:PL 0/0:37:84:37:0,84,1156 +20_10037292_10066351 9111 . A . . END=9111 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20_10037292_10066351 9112 . A . . END=9112 GT:DP:GQ:MIN_DP:PL 0/0:37:59:37:0,59,1075 +20_10037292_10066351 9113 . G . . END=9115 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,101,1235 +20_10037292_10066351 9116 . A . . END=9116 GT:DP:GQ:MIN_DP:PL 0/0:39:94:39:0,94,1139 +20_10037292_10066351 9117 . A . . END=9140 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1026 +20_10037292_10066351 9141 . A . . END=9151 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1091 +20_10037292_10066351 9152 . C . . END=9153 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20_10037292_10066351 9154 . A . . END=9155 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20_10037292_10066351 9156 . A . . END=9156 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,954 +20_10037292_10066351 9157 . A . . END=9157 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 9158 . C . . END=9163 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,921 +20_10037292_10066351 9164 . C . . END=9164 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1007 +20_10037292_10066351 9165 . C . . END=9165 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,961 +20_10037292_10066351 9166 . T . . END=9168 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 9169 . C . . END=9169 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,934 +20_10037292_10066351 9170 . C . . END=9170 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 9171 . A . . END=9171 GT:DP:GQ:MIN_DP:PL 0/0:34:71:34:0,71,995 +20_10037292_10066351 9172 . T . . END=9174 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 9175 . A . . END=9175 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,940 +20_10037292_10066351 9176 . A . . END=9176 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1037 +20_10037292_10066351 9177 . T . . END=9177 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,1003 +20_10037292_10066351 9178 . G . . END=9181 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,871 +20_10037292_10066351 9182 . G . . END=9182 GT:DP:GQ:MIN_DP:PL 0/0:32:57:32:0,57,895 +20_10037292_10066351 9183 . A . . END=9184 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1006 +20_10037292_10066351 9185 . T . . END=9185 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1095 +20_10037292_10066351 9186 . T . . END=9186 GT:DP:GQ:MIN_DP:PL 0/0:35:70:35:0,70,1024 +20_10037292_10066351 9187 . T . . END=9188 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,102,1530 +20_10037292_10066351 9189 . T . . END=9189 GT:DP:GQ:MIN_DP:PL 0/0:37:93:37:0,93,1048 +20_10037292_10066351 9190 . C . . END=9193 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,105,1575 +20_10037292_10066351 9194 . A . . END=9194 GT:DP:GQ:MIN_DP:PL 0/0:36:95:36:0,95,1071 +20_10037292_10066351 9195 . C . . END=9196 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20_10037292_10066351 9197 . C . . END=9197 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1395 +20_10037292_10066351 9198 . A . . END=9206 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1485 +20_10037292_10066351 9207 . C . . END=9208 GT:DP:GQ:MIN_DP:PL 0/0:36:92:35:0,92,1103 +20_10037292_10066351 9209 . T . . END=9209 GT:DP:GQ:MIN_DP:PL 0/0:35:63:35:0,63,1038 +20_10037292_10066351 9210 . T . . END=9211 GT:DP:GQ:MIN_DP:PL 0/0:35:93:35:0,93,1395 +20_10037292_10066351 9212 . A . . END=9214 GT:DP:GQ:MIN_DP:PL 0/0:35:84:34:0,84,1260 +20_10037292_10066351 9215 . T . . END=9219 GT:DP:GQ:MIN_DP:PL 0/0:34:78:32:0,78,1170 +20_10037292_10066351 9220 . C . . END=9222 GT:DP:GQ:MIN_DP:PL 0/0:32:81:29:0,81,1215 +20_10037292_10066351 9223 . C . . END=9224 GT:DP:GQ:MIN_DP:PL 0/0:30:75:29:0,75,1125 +20_10037292_10066351 9225 . A . . END=9227 GT:DP:GQ:MIN_DP:PL 0/0:29:63:27:0,63,945 +20_10037292_10066351 9228 . T . . END=9231 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,1080 +20_10037292_10066351 9232 . C . . END=9232 GT:DP:GQ:MIN_DP:PL 0/0:30:63:30:0,63,940 +20_10037292_10066351 9233 . C . . END=9236 GT:DP:GQ:MIN_DP:PL 0/0:29:75:26:0,75,832 +20_10037292_10066351 9237 . G . . END=9237 GT:DP:GQ:MIN_DP:PL 0/0:26:62:26:0,62,795 +20_10037292_10066351 9238 . C . . END=9241 GT:DP:GQ:MIN_DP:PL 0/0:27:80:27:0,80,780 +20_10037292_10066351 9242 . C . . END=9243 GT:DP:GQ:MIN_DP:PL 0/0:27:65:27:0,65,820 +20_10037292_10066351 9244 . C . . END=9244 GT:DP:GQ:MIN_DP:PL 0/0:27:47:27:0,47,798 +20_10037292_10066351 9245 . A . . END=9248 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,862 +20_10037292_10066351 9249 . G . . END=9249 GT:DP:GQ:MIN_DP:PL 0/0:30:60:30:0,60,874 +20_10037292_10066351 9250 . C . . END=9250 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,912 +20_10037292_10066351 9251 . A . . END=9254 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 9255 . T . . END=9255 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,894 +20_10037292_10066351 9256 . C . . END=9257 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 9258 . C . . END=9264 GT:DP:GQ:MIN_DP:PL 0/0:28:70:27:0,70,861 +20_10037292_10066351 9265 . A . . END=9265 GT:DP:GQ:MIN_DP:PL 0/0:27:52:27:0,52,775 +20_10037292_10066351 9266 . T . . END=9274 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,1080 +20_10037292_10066351 9275 . C . . END=9275 GT:DP:GQ:MIN_DP:PL 0/0:26:47:26:0,47,781 +20_10037292_10066351 9276 . A . . END=9282 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20_10037292_10066351 9283 . T . . END=9283 GT:DP:GQ:MIN_DP:PL 0/0:29:61:29:0,61,866 +20_10037292_10066351 9284 . C . . END=9284 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 +20_10037292_10066351 9285 . T . . END=9286 GT:DP:GQ:MIN_DP:PL 0/0:29:74:29:0,74,888 +20_10037292_10066351 9287 . A . . END=9292 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 +20_10037292_10066351 9293 . A . . END=9294 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,958 +20_10037292_10066351 9295 . T . . END=9299 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20_10037292_10066351 9300 . T . . END=9300 GT:DP:GQ:MIN_DP:PL 0/0:32:74:32:0,74,931 +20_10037292_10066351 9301 . C . . END=9305 GT:DP:GQ:MIN_DP:PL 0/0:33:90:31:0,90,1350 +20_10037292_10066351 9306 . A . . END=9306 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,949 +20_10037292_10066351 9307 . A . . END=9308 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 9309 . C . . END=9309 GT:DP:GQ:MIN_DP:PL 0/0:30:58:30:0,58,886 +20_10037292_10066351 9310 . C . . END=9315 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,943 +20_10037292_10066351 9316 . A . . END=9316 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,941 +20_10037292_10066351 9317 . A . . END=9317 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,978 +20_10037292_10066351 9318 . A . . END=9318 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,959 +20_10037292_10066351 9319 . C . . END=9322 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,997 +20_10037292_10066351 9323 . T . . END=9323 GT:DP:GQ:MIN_DP:PL 0/0:31:48:31:0,48,899 +20_10037292_10066351 9324 . C . . END=9324 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1109 +20_10037292_10066351 9325 . T . . END=9329 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1099 +20_10037292_10066351 9330 . A . . END=9338 GT:DP:GQ:MIN_DP:PL 0/0:35:81:32:0,81,1215 +20_10037292_10066351 9339 . A . . END=9341 GT:DP:GQ:MIN_DP:PL 0/0:31:78:29:0,78,1170 +20_10037292_10066351 9342 . A . . END=9343 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20_10037292_10066351 9344 . T . . END=9346 GT:DP:GQ:MIN_DP:PL 0/0:30:78:29:0,78,1170 +20_10037292_10066351 9347 . T . . END=9352 GT:DP:GQ:MIN_DP:PL 0/0:30:84:30:0,84,1260 +20_10037292_10066351 9353 . T . . END=9353 GT:DP:GQ:MIN_DP:PL 0/0:28:63:28:0,63,794 +20_10037292_10066351 9354 . T . . END=9360 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20_10037292_10066351 9361 . G . . END=9364 GT:DP:GQ:MIN_DP:PL 0/0:29:71:27:0,71,893 +20_10037292_10066351 9365 . C . . END=9371 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,843 +20_10037292_10066351 9372 . T . . END=9372 GT:DP:GQ:MIN_DP:PL 0/0:29:63:29:0,63,824 +20_10037292_10066351 9373 . C . . END=9376 GT:DP:GQ:MIN_DP:PL 0/0:29:84:28:0,84,882 +20_10037292_10066351 9377 . A . . END=9377 GT:DP:GQ:MIN_DP:PL 0/0:31:69:31:0,69,880 +20_10037292_10066351 9378 . A . . END=9378 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 9379 . T . . END=9379 GT:DP:GQ:MIN_DP:PL 0/0:29:63:29:0,63,880 +20_10037292_10066351 9380 . T . . END=9380 GT:DP:GQ:MIN_DP:PL 0/0:30:56:30:0,56,834 +20_10037292_10066351 9381 . C . . END=9382 GT:DP:GQ:MIN_DP:PL 0/0:30:87:29:0,87,927 +20_10037292_10066351 9383 . C . . END=9383 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,991 +20_10037292_10066351 9384 . A . . END=9385 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,1005 +20_10037292_10066351 9386 . A . . END=9386 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20_10037292_10066351 9387 . T . . END=9387 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,989 +20_10037292_10066351 9388 . C . . END=9390 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,979 +20_10037292_10066351 9391 . A . . END=9391 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,925 +20_10037292_10066351 9392 . C . . END=9392 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,969 +20_10037292_10066351 9393 . T . . END=9394 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20_10037292_10066351 9395 . T . . END=9396 GT:DP:GQ:MIN_DP:PL 0/0:35:84:34:0,84,967 +20_10037292_10066351 9397 . G . . END=9397 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 9398 . A . . END=9399 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20_10037292_10066351 9400 . C . . END=9400 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,999 +20_10037292_10066351 9401 . T . . END=9410 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 9411 . A . . END=9411 GT:DP:GQ:MIN_DP:PL 0/0:33:76:33:0,76,993 +20_10037292_10066351 9412 . T . . END=9414 GT:DP:GQ:MIN_DP:PL 0/0:33:93:32:0,93,1395 +20_10037292_10066351 9415 . T . . END=9419 GT:DP:GQ:MIN_DP:PL 0/0:32:87:30:0,87,1305 +20_10037292_10066351 9420 . T . . END=9426 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 9427 . T . . END=9427 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,933 +20_10037292_10066351 9428 . A . . END=9437 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,902 +20_10037292_10066351 9438 . T . . END=9438 GT:DP:GQ:MIN_DP:PL 0/0:31:67:31:0,67,919 +20_10037292_10066351 9439 . T . . END=9439 GT:DP:GQ:MIN_DP:PL 0/0:33:39:33:0,39,897 +20_10037292_10066351 9440 . T . . END=9454 GT:DP:GQ:MIN_DP:PL 0/0:33:81:29:0,81,918 +20_10037292_10066351 9455 . G . . END=9455 GT:DP:GQ:MIN_DP:PL 0/0:29:73:29:0,73,898 +20_10037292_10066351 9456 . G . . END=9468 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,883 +20_10037292_10066351 9469 . T . . END=9478 GT:DP:GQ:MIN_DP:PL 0/0:28:75:26:0,75,1125 +20_10037292_10066351 9479 . A . . END=9479 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,801 +20_10037292_10066351 9480 . A . . END=9480 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20_10037292_10066351 9481 . G . . END=9481 GT:DP:GQ:MIN_DP:PL 0/0:26:65:26:0,65,756 +20_10037292_10066351 9482 . C . . END=9484 GT:DP:GQ:MIN_DP:PL 0/0:27:72:24:0,72,748 +20_10037292_10066351 9485 . A . . END=9485 GT:DP:GQ:MIN_DP:PL 0/0:27:44:27:0,44,682 +20_10037292_10066351 9486 . A . . END=9486 GT:DP:GQ:MIN_DP:PL 0/0:27:65:27:0,65,746 +20_10037292_10066351 9487 . C . . END=9504 GT:DP:GQ:MIN_DP:PL 0/0:29:71:28:0,71,847 +20_10037292_10066351 9505 . A . . END=9505 GT:DP:GQ:MIN_DP:PL 0/0:27:68:27:0,68,804 +20_10037292_10066351 9506 . C . . END=9507 GT:DP:GQ:MIN_DP:PL 0/0:27:72:27:0,72,1080 +20_10037292_10066351 9508 . T . . END=9508 GT:DP:GQ:MIN_DP:PL 0/0:27:68:27:0,68,802 +20_10037292_10066351 9509 . G . . END=9511 GT:DP:GQ:MIN_DP:PL 0/0:26:72:24:0,72,758 +20_10037292_10066351 9512 . T . . END=9512 GT:DP:GQ:MIN_DP:PL 0/0:24:58:24:0,58,684 +20_10037292_10066351 9513 . C . . END=9526 GT:DP:GQ:MIN_DP:PL 0/0:26:60:25:0,60,900 +20_10037292_10066351 9527 . C . . END=9530 GT:DP:GQ:MIN_DP:PL 0/0:27:72:26:0,72,1080 +20_10037292_10066351 9531 . C . . END=9534 GT:DP:GQ:MIN_DP:PL 0/0:27:69:23:0,69,651 +20_10037292_10066351 9535 . A . . END=9535 GT:DP:GQ:MIN_DP:PL 0/0:23:57:23:0,57,659 +20_10037292_10066351 9536 . T C, 148.64 . BaseQRankSum=-0.564;DP=21;ExcessHet=0.0000;MLEAC=1,0;MLEAF=0.500,0.00;MQRankSum=0.000;RAW_MQandDP=75600,21;ReadPosRankSum=0.860 GT:AD:DP:GQ:PL:SB 0/1:14,7,0:21:99:156,0,353,197,374,571:3,11,5,2 +20_10037292_10066351 9537 . T . . END=9537 GT:DP:GQ:MIN_DP:PL 0/0:23:53:23:0,53,658 +20_10037292_10066351 9538 . C . . END=9538 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +20_10037292_10066351 9539 . A . . END=9539 GT:DP:GQ:MIN_DP:PL 0/0:24:22:24:0,22,564 +20_10037292_10066351 9540 . A . . END=9540 GT:DP:GQ:MIN_DP:PL 0/0:24:69:24:0,69,1035 +20_10037292_10066351 9541 . C . . END=9541 GT:DP:GQ:MIN_DP:PL 0/0:23:52:23:0,52,683 +20_10037292_10066351 9542 . T . . END=9542 GT:DP:GQ:MIN_DP:PL 0/0:22:54:22:0,54,683 +20_10037292_10066351 9543 . C . . END=9546 GT:DP:GQ:MIN_DP:PL 0/0:24:69:23:0,69,752 +20_10037292_10066351 9547 . T . . END=9548 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,1125 +20_10037292_10066351 9549 . A . . END=9549 GT:DP:GQ:MIN_DP:PL 0/0:27:65:27:0,65,760 +20_10037292_10066351 9550 . A . . END=9555 GT:DP:GQ:MIN_DP:PL 0/0:28:78:27:0,78,1170 +20_10037292_10066351 9556 . T . . END=9556 GT:DP:GQ:MIN_DP:PL 0/0:28:55:28:0,55,776 +20_10037292_10066351 9557 . A . . END=9557 GT:DP:GQ:MIN_DP:PL 0/0:27:47:27:0,47,778 +20_10037292_10066351 9558 . A . . END=9558 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,765 +20_10037292_10066351 9559 . A . . END=9561 GT:DP:GQ:MIN_DP:PL 0/0:27:70:26:0,70,832 +20_10037292_10066351 9562 . C . . END=9564 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 9565 . G . . END=9565 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20_10037292_10066351 9566 . T . . END=9567 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 9568 . A . . END=9569 GT:DP:GQ:MIN_DP:PL 0/0:31:78:30:0,78,1170 +20_10037292_10066351 9570 . T . . END=9570 GT:DP:GQ:MIN_DP:PL 0/0:31:62:31:0,62,890 +20_10037292_10066351 9571 . C . . END=9578 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,983 +20_10037292_10066351 9579 . T . . END=9582 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,985 +20_10037292_10066351 9583 . A . . END=9583 GT:DP:GQ:MIN_DP:PL 0/0:32:63:32:0,63,921 +20_10037292_10066351 9584 . T . . END=9588 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,935 +20_10037292_10066351 9589 . A . . END=9589 GT:DP:GQ:MIN_DP:PL 0/0:32:77:32:0,77,898 +20_10037292_10066351 9590 . C . . END=9596 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,964 +20_10037292_10066351 9597 . C . . END=9597 GT:DP:GQ:MIN_DP:PL 0/0:31:74:31:0,74,881 +20_10037292_10066351 9598 . G . . END=9602 GT:DP:GQ:MIN_DP:PL 0/0:33:96:32:0,96,901 +20_10037292_10066351 9603 . A . . END=9627 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 9628 . A . . END=9628 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1440 +20_10037292_10066351 9629 . A . . END=9637 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1172 +20_10037292_10066351 9638 . A . . END=9638 GT:DP:GQ:MIN_DP:PL 0/0:36:68:36:0,68,946 +20_10037292_10066351 9639 . A . . END=9641 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 9642 . A . . END=9643 GT:DP:GQ:MIN_DP:PL 0/0:34:83:33:0,83,925 +20_10037292_10066351 9644 . T . . END=9648 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,102,1015 +20_10037292_10066351 9649 . T . . END=9649 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,980 +20_10037292_10066351 9650 . C . . END=9652 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1023 +20_10037292_10066351 9653 . T . . END=9653 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1058 +20_10037292_10066351 9654 . T . . END=9655 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,108,1065 +20_10037292_10066351 9656 . T . . END=9657 GT:DP:GQ:MIN_DP:PL 0/0:38:92:37:0,92,1061 +20_10037292_10066351 9658 . T . . END=9658 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1072 +20_10037292_10066351 9659 . T . . END=9659 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1070 +20_10037292_10066351 9660 . A . . END=9660 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20_10037292_10066351 9661 . T . . END=9662 GT:DP:GQ:MIN_DP:PL 0/0:38:84:37:0,84,1058 +20_10037292_10066351 9663 . T . . END=9848 GT:DP:GQ:MIN_DP:PL 0/0:45:99:37:0,102,1151 +20_10037292_10066351 9849 . A . . END=9850 GT:DP:GQ:MIN_DP:PL 0/0:42:93:42:0,93,1083 +20_10037292_10066351 9851 . T . . END=9859 GT:DP:GQ:MIN_DP:PL 0/0:42:99:40:0,100,1156 +20_10037292_10066351 12912 . G . . END=12913 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1440 +20_10037292_10066351 12914 . G . . END=12915 GT:DP:GQ:MIN_DP:PL 0/0:38:81:37:0,81,1160 +20_10037292_10066351 12916 . A . . END=12921 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20_10037292_10066351 12922 . A . . END=12922 GT:DP:GQ:MIN_DP:PL 0/0:34:76:34:0,76,1008 +20_10037292_10066351 12923 . A . . END=12925 GT:DP:GQ:MIN_DP:PL 0/0:34:96:32:0,96,980 +20_10037292_10066351 12926 . C . . END=12926 GT:DP:GQ:MIN_DP:PL 0/0:32:83:32:0,83,899 +20_10037292_10066351 12927 . C . . END=12928 GT:DP:GQ:MIN_DP:PL 0/0:32:95:32:0,95,965 +20_10037292_10066351 12929 . G . . END=12929 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1119 +20_10037292_10066351 12930 . A . . END=12930 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 12931 . A . . END=12931 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,999 +20_10037292_10066351 12932 . A . . END=12932 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,994 +20_10037292_10066351 12933 . A . . END=12936 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 12937 . T . . END=12939 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20_10037292_10066351 12940 . A . . END=12940 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 12941 . C . . END=12941 GT:DP:GQ:MIN_DP:PL 0/0:34:89:34:0,89,1007 +20_10037292_10066351 12942 . A . . END=12942 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,1056 +20_10037292_10066351 12943 . A . . END=12943 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1017 +20_10037292_10066351 12944 . A . . END=12946 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1350 +20_10037292_10066351 12947 . T . . END=12947 GT:DP:GQ:MIN_DP:PL 0/0:32:55:32:0,55,902 +20_10037292_10066351 12948 . G . . END=12953 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,1260 +20_10037292_10066351 12954 . A . . END=12956 GT:DP:GQ:MIN_DP:PL 0/0:32:70:29:0,70,876 +20_10037292_10066351 12957 . A . . END=12957 GT:DP:GQ:MIN_DP:PL 0/0:29:58:29:0,58,804 +20_10037292_10066351 12958 . A . . END=12961 GT:DP:GQ:MIN_DP:PL 0/0:29:71:28:0,71,857 +20_10037292_10066351 12962 . G . . END=12967 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,840 +20_10037292_10066351 12968 . A . . END=12968 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,805 +20_10037292_10066351 12969 . G . . END=12969 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,914 +20_10037292_10066351 12970 . C . . END=12970 GT:DP:GQ:MIN_DP:PL 0/0:26:78:26:0,78,853 +20_10037292_10066351 12971 . T . . END=12972 GT:DP:GQ:MIN_DP:PL 0/0:27:68:27:0,68,758 +20_10037292_10066351 12973 . A . . END=12975 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20_10037292_10066351 12976 . A . . END=12978 GT:DP:GQ:MIN_DP:PL 0/0:29:60:28:0,60,821 +20_10037292_10066351 12979 . A . . END=12979 GT:DP:GQ:MIN_DP:PL 0/0:29:57:29:0,57,846 +20_10037292_10066351 12980 . G . . END=12980 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20_10037292_10066351 12981 . G . . END=12990 GT:DP:GQ:MIN_DP:PL 0/0:30:81:28:0,81,832 +20_10037292_10066351 12991 . A . . END=12993 GT:DP:GQ:MIN_DP:PL 0/0:31:78:30:0,78,1170 +20_10037292_10066351 12994 . A . . END=12994 GT:DP:GQ:MIN_DP:PL 0/0:32:66:32:0,66,884 +20_10037292_10066351 12995 . C . . END=12995 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,828 +20_10037292_10066351 12996 . G . . END=13013 GT:DP:GQ:MIN_DP:PL 0/0:31:81:28:0,81,857 +20_10037292_10066351 13014 . A . . END=13016 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,1125 +20_10037292_10066351 13017 . C . . END=13018 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20_10037292_10066351 13019 . C . . END=13019 GT:DP:GQ:MIN_DP:PL 0/0:30:59:30:0,59,851 +20_10037292_10066351 13020 . A . . END=13021 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 13022 . G . . END=13023 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20_10037292_10066351 13024 . A . . END=13024 GT:DP:GQ:MIN_DP:PL 0/0:27:69:27:0,69,845 +20_10037292_10066351 13025 . A . . END=13026 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,1125 +20_10037292_10066351 13027 . A . . END=13027 GT:DP:GQ:MIN_DP:PL 0/0:26:66:26:0,66,815 +20_10037292_10066351 13028 . G . . END=13028 GT:DP:GQ:MIN_DP:PL 0/0:26:72:26:0,72,1080 +20_10037292_10066351 13029 . T . . END=13029 GT:DP:GQ:MIN_DP:PL 0/0:27:64:27:0,64,733 +20_10037292_10066351 13030 . A . . END=13034 GT:DP:GQ:MIN_DP:PL 0/0:28:72:27:0,72,845 +20_10037292_10066351 13035 . G . . END=13035 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,837 +20_10037292_10066351 13036 . T . . END=13036 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,788 +20_10037292_10066351 13037 . G . . END=13037 GT:DP:GQ:MIN_DP:PL 0/0:28:67:28:0,67,839 +20_10037292_10066351 13038 . T . . END=13040 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,833 +20_10037292_10066351 13041 . A . . END=13041 GT:DP:GQ:MIN_DP:PL 0/0:27:64:27:0,64,782 +20_10037292_10066351 13042 . T . . END=13051 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,835 +20_10037292_10066351 13052 . A . . END=13052 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 13053 . G . . END=13054 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 13055 . T . . END=13055 GT:DP:GQ:MIN_DP:PL 0/0:37:80:37:0,80,1086 +20_10037292_10066351 13056 . C . . END=13057 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,108,1620 +20_10037292_10066351 13058 . A . . END=13058 GT:DP:GQ:MIN_DP:PL 0/0:40:69:40:0,69,1150 +20_10037292_10066351 13059 . T . . END=13059 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,111,1665 +20_10037292_10066351 13060 . T . . END=13060 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1152 +20_10037292_10066351 13061 . G . . END=13061 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +20_10037292_10066351 13062 . G . . END=13062 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1169 +20_10037292_10066351 13063 . T . . END=13063 GT:DP:GQ:MIN_DP:PL 0/0:39:91:39:0,91,1125 +20_10037292_10066351 13064 . T . . END=13064 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,108,1620 +20_10037292_10066351 13065 . T . . END=13065 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1139 +20_10037292_10066351 13066 . T . . END=13066 GT:DP:GQ:MIN_DP:PL 0/0:38:74:38:0,74,1124 +20_10037292_10066351 13067 . C . . END=13067 GT:DP:GQ:MIN_DP:PL 0/0:38:83:38:0,83,1143 +20_10037292_10066351 13068 . A . . END=13068 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1171 +20_10037292_10066351 13069 . C . . END=13069 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1174 +20_10037292_10066351 13070 . A . . END=13070 GT:DP:GQ:MIN_DP:PL 0/0:41:68:41:0,68,1170 +20_10037292_10066351 13071 . T . . END=13072 GT:DP:GQ:MIN_DP:PL 0/0:40:74:40:0,74,1159 +20_10037292_10066351 13073 . G . . END=13089 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,114,1259 +20_10037292_10066351 13090 . A . . END=13090 GT:DP:GQ:MIN_DP:PL 0/0:45:92:45:0,92,1316 +20_10037292_10066351 13091 . G . . END=13182 GT:DP:GQ:MIN_DP:PL 0/0:49:99:43:0,114,1309 +20_10037292_10066351 13183 . A . . END=13183 GT:DP:GQ:MIN_DP:PL 0/0:46:90:46:0,90,1291 +20_10037292_10066351 13184 . A . . END=13184 GT:DP:GQ:MIN_DP:PL 0/0:46:99:46:0,111,1665 +20_10037292_10066351 13185 . T A, 0 . BaseQRankSum=-0.574;DP=43;ExcessHet=0.0000;MLEAC=0,0;MLEAF=0.00,0.00;MQRankSum=0.000;RAW_MQandDP=154800,43;ReadPosRankSum=2.040 GT:AD:DP:GQ:PL:SB 0/0:40,2,0:42:60:0,60,1194,120,1200,1259:20,20,2,0 +20_10037292_10066351 13186 . A . . END=13187 GT:DP:GQ:MIN_DP:PL 0/0:41:82:39:0,82,1220 +20_10037292_10066351 13188 . A . . END=13188 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1137 +20_10037292_10066351 13189 . A . . END=13189 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1126 +20_10037292_10066351 13190 . A . . END=13190 GT:DP:GQ:MIN_DP:PL 0/0:38:79:38:0,79,1147 +20_10037292_10066351 13191 . G . . END=13192 GT:DP:GQ:MIN_DP:PL 0/0:39:80:39:0,80,1118 +20_10037292_10066351 13193 . C . . END=13193 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,105,1575 +20_10037292_10066351 13194 . A . . END=13195 GT:DP:GQ:MIN_DP:PL 0/0:39:83:38:0,83,1147 +20_10037292_10066351 13196 . T . . END=13196 GT:DP:GQ:MIN_DP:PL 0/0:39:67:39:0,67,1070 +20_10037292_10066351 13197 . A . . END=13197 GT:DP:GQ:MIN_DP:PL 0/0:39:96:39:0,96,1440 +20_10037292_10066351 13198 . T . . END=13199 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,105,1575 +20_10037292_10066351 13200 . T . . END=13200 GT:DP:GQ:MIN_DP:PL 0/0:42:72:42:0,72,1137 +20_10037292_10066351 13201 . T . . END=13205 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,101,1208 +20_10037292_10066351 13206 . C . . END=13206 GT:DP:GQ:MIN_DP:PL 0/0:39:94:39:0,94,1171 +20_10037292_10066351 13207 . T . . END=13207 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1156 +20_10037292_10066351 13208 . C . . END=13209 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,105,1575 +20_10037292_10066351 13210 . A . . END=13210 GT:DP:GQ:MIN_DP:PL 0/0:39:83:39:0,83,1168 +20_10037292_10066351 13211 . G . . END=13211 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,108,1620 +20_10037292_10066351 13212 . C . . END=13212 GT:DP:GQ:MIN_DP:PL 0/0:39:84:39:0,84,1103 +20_10037292_10066351 13213 . T . . END=13214 GT:DP:GQ:MIN_DP:PL 0/0:42:90:41:0,90,1196 +20_10037292_10066351 13215 . T . . END=13215 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,110,1229 +20_10037292_10066351 13216 . T . . END=13216 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1208 +20_10037292_10066351 13217 . C . . END=13217 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,111,1665 +20_10037292_10066351 13218 . A . . END=13218 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1276 +20_10037292_10066351 13219 . A . . END=13219 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,111,1665 +20_10037292_10066351 13220 . G . . END=13220 GT:DP:GQ:MIN_DP:PL 0/0:41:89:41:0,89,1192 +20_10037292_10066351 13221 . T . . END=13225 GT:DP:GQ:MIN_DP:PL 0/0:40:90:40:0,90,1157 +20_10037292_10066351 13226 . A . . END=13227 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,102,1530 +20_10037292_10066351 13228 . C . . END=13229 GT:DP:GQ:MIN_DP:PL 0/0:39:92:38:0,92,1150 +20_10037292_10066351 13230 . G . . END=13230 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,105,1177 +20_10037292_10066351 13231 . G . . END=13231 GT:DP:GQ:MIN_DP:PL 0/0:40:86:40:0,86,1185 +20_10037292_10066351 13232 . A . . END=13232 GT:DP:GQ:MIN_DP:PL 0/0:40:95:40:0,95,1172 +20_10037292_10066351 13233 . A . . END=13236 GT:DP:GQ:MIN_DP:PL 0/0:39:82:38:0,82,1118 +20_10037292_10066351 13237 . T . . END=13237 GT:DP:GQ:MIN_DP:PL 0/0:38:93:38:0,93,1395 +20_10037292_10066351 13238 . A . . END=13239 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1119 +20_10037292_10066351 13240 . C . . END=13240 GT:DP:GQ:MIN_DP:PL 0/0:38:90:38:0,90,1350 +20_10037292_10066351 13241 . C . . END=13242 GT:DP:GQ:MIN_DP:PL 0/0:37:82:37:0,82,1089 +20_10037292_10066351 13243 . A . . END=13243 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1350 +20_10037292_10066351 13244 . A . . END=13244 GT:DP:GQ:MIN_DP:PL 0/0:37:82:37:0,82,1110 +20_10037292_10066351 13245 . G . . END=13245 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1076 +20_10037292_10066351 13246 . G . . END=13246 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1062 +20_10037292_10066351 13247 . A . . END=13249 GT:DP:GQ:MIN_DP:PL 0/0:33:93:33:0,93,1395 +20_10037292_10066351 13250 . T . . END=13251 GT:DP:GQ:MIN_DP:PL 0/0:33:67:33:0,67,1004 +20_10037292_10066351 13252 . A . . END=13252 GT:DP:GQ:MIN_DP:PL 0/0:34:82:34:0,82,1111 +20_10037292_10066351 13253 . G . . END=13254 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,1028 +20_10037292_10066351 13255 . T . . END=13255 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20_10037292_10066351 13256 . T . . END=13256 GT:DP:GQ:MIN_DP:PL 0/0:34:79:34:0,79,1058 +20_10037292_10066351 13257 . T . . END=13257 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,1036 +20_10037292_10066351 13258 . C . . END=13258 GT:DP:GQ:MIN_DP:PL 0/0:33:74:33:0,74,1048 +20_10037292_10066351 13259 . A . . END=13259 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,1082 +20_10037292_10066351 13260 . C . . END=13260 GT:DP:GQ:MIN_DP:PL 0/0:35:72:35:0,72,1084 +20_10037292_10066351 13261 . A . . END=13262 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 13263 . A . . END=13263 GT:DP:GQ:MIN_DP:PL 0/0:33:64:33:0,64,1018 +20_10037292_10066351 13264 . T . . END=13264 GT:DP:GQ:MIN_DP:PL 0/0:35:77:35:0,77,1107 +20_10037292_10066351 13265 . G . . END=13265 GT:DP:GQ:MIN_DP:PL 0/0:33:67:33:0,67,1009 +20_10037292_10066351 13266 . T . . END=13268 GT:DP:GQ:MIN_DP:PL 0/0:34:70:34:0,70,1039 +20_10037292_10066351 13269 . G . . END=13269 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 13270 . A . . END=13271 GT:DP:GQ:MIN_DP:PL 0/0:34:76:34:0,76,1057 +20_10037292_10066351 13272 . C . . END=13272 GT:DP:GQ:MIN_DP:PL 0/0:34:69:34:0,69,1005 +20_10037292_10066351 13273 . A . . END=13275 GT:DP:GQ:MIN_DP:PL 0/0:36:91:36:0,91,1116 +20_10037292_10066351 13276 . A . . END=13276 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1156 +20_10037292_10066351 13277 . G . . END=13277 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20_10037292_10066351 13278 . A . . END=13278 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1120 +20_10037292_10066351 13279 . C . . END=13279 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,1119 +20_10037292_10066351 13280 . A . . END=13280 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1124 +20_10037292_10066351 13281 . T . . END=13281 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20_10037292_10066351 13282 . C . . END=13282 GT:DP:GQ:MIN_DP:PL 0/0:36:58:36:0,58,1060 +20_10037292_10066351 13283 . T . . END=13285 GT:DP:GQ:MIN_DP:PL 0/0:36:75:36:0,75,1129 +20_10037292_10066351 13286 . T . . END=13286 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 13287 . A . . END=13292 GT:DP:GQ:MIN_DP:PL 0/0:36:75:35:0,75,1083 +20_10037292_10066351 13293 . T . . END=13293 GT:DP:GQ:MIN_DP:PL 0/0:38:81:38:0,81,1243 +20_10037292_10066351 13294 . G . . END=13294 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1142 +20_10037292_10066351 13295 . T . . END=13295 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 13296 . T . . END=13300 GT:DP:GQ:MIN_DP:PL 0/0:37:74:36:0,74,1111 +20_10037292_10066351 13301 . C . . END=13301 GT:DP:GQ:MIN_DP:PL 0/0:35:84:35:0,84,1260 +20_10037292_10066351 13302 . T . . END=13303 GT:DP:GQ:MIN_DP:PL 0/0:35:73:35:0,73,1126 +20_10037292_10066351 13304 . T . . END=13309 GT:DP:GQ:MIN_DP:PL 0/0:34:65:33:0,65,1022 +20_10037292_10066351 13310 . T . . END=13310 GT:DP:GQ:MIN_DP:PL 0/0:32:80:32:0,80,1010 +20_10037292_10066351 13311 . C . . END=13311 GT:DP:GQ:MIN_DP:PL 0/0:33:69:33:0,69,1004 +20_10037292_10066351 13312 . C . . END=13312 GT:DP:GQ:MIN_DP:PL 0/0:30:57:30:0,57,928 +20_10037292_10066351 13313 . T . . END=13314 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 +20_10037292_10066351 13315 . T . . END=13317 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,960 +20_10037292_10066351 13318 . C . . END=13318 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1053 +20_10037292_10066351 13319 . T . . END=13319 GT:DP:GQ:MIN_DP:PL 0/0:33:81:33:0,81,1003 +20_10037292_10066351 13320 . T . . END=13320 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1013 +20_10037292_10066351 13321 . T . . END=13321 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,102,1100 +20_10037292_10066351 13322 . C . . END=13322 GT:DP:GQ:MIN_DP:PL 0/0:35:88:35:0,88,1089 +20_10037292_10066351 13323 . T . . END=13348 GT:DP:GQ:MIN_DP:PL 0/0:37:99:33:0,99,1043 +20_10037292_10066351 13349 . G . . END=13351 GT:DP:GQ:MIN_DP:PL 0/0:34:87:33:0,87,1073 +20_10037292_10066351 13352 . T . . END=13358 GT:DP:GQ:MIN_DP:PL 0/0:36:90:34:0,90,1350 +20_10037292_10066351 13359 . T . . END=13359 GT:DP:GQ:MIN_DP:PL 0/0:36:81:36:0,81,1077 +20_10037292_10066351 13360 . A . . END=13374 GT:DP:GQ:MIN_DP:PL 0/0:32:90:30:0,90,925 +20_10037292_10066351 13375 . C . . END=13377 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 13378 . T . . END=13378 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 13379 . G . . END=13382 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1067 +20_10037292_10066351 13383 . T . . END=13383 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,1059 +20_10037292_10066351 13384 . G . . END=13385 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 13386 . T . . END=13386 GT:DP:GQ:MIN_DP:PL 0/0:34:96:34:0,96,1440 +20_10037292_10066351 13387 . C . . END=13387 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1057 +20_10037292_10066351 13388 . T . . END=13395 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20_10037292_10066351 13396 . C . . END=13396 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,1006 +20_10037292_10066351 13397 . A . . END=13404 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20_10037292_10066351 13405 . T . . END=13406 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20_10037292_10066351 13407 . T . . END=13408 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 13409 . C . . END=13409 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,1023 +20_10037292_10066351 13410 . T . . END=13412 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 13413 . T . . END=13416 GT:DP:GQ:MIN_DP:PL 0/0:32:81:31:0,81,1215 +20_10037292_10066351 13417 . T . . END=13417 GT:DP:GQ:MIN_DP:PL 0/0:30:63:30:0,63,940 +20_10037292_10066351 13418 . A . . END=13425 GT:DP:GQ:MIN_DP:PL 0/0:31:75:29:0,75,1125 +20_10037292_10066351 13426 . G . . END=13426 GT:DP:GQ:MIN_DP:PL 0/0:29:57:29:0,57,831 +20_10037292_10066351 13427 . A . . END=13452 GT:DP:GQ:MIN_DP:PL 0/0:25:62:23:0,62,762 +20_10037292_10066351 13453 . A . . END=13453 GT:DP:GQ:MIN_DP:PL 0/0:24:45:24:0,45,732 +20_10037292_10066351 13454 . T . . END=13455 GT:DP:GQ:MIN_DP:PL 0/0:25:66:25:0,66,990 +20_10037292_10066351 13456 . C . . END=13456 GT:DP:GQ:MIN_DP:PL 0/0:25:52:25:0,52,796 +20_10037292_10066351 13457 . T . . END=13466 GT:DP:GQ:MIN_DP:PL 0/0:24:60:22:0,60,900 +20_10037292_10066351 13467 . T . . END=13472 GT:DP:GQ:MIN_DP:PL 0/0:26:72:25:0,72,1080 +20_10037292_10066351 13473 . A . . END=13473 GT:DP:GQ:MIN_DP:PL 0/0:25:64:25:0,64,737 +20_10037292_10066351 13474 . A . . END=13478 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,849 +20_10037292_10066351 13479 . G . . END=13479 GT:DP:GQ:MIN_DP:PL 0/0:27:66:27:0,66,808 +20_10037292_10066351 13480 . G . . END=13489 GT:DP:GQ:MIN_DP:PL 0/0:27:75:26:0,75,1125 +20_10037292_10066351 13490 . A . . END=13492 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,845 +20_10037292_10066351 13493 . A . . END=13493 GT:DP:GQ:MIN_DP:PL 0/0:27:78:27:0,78,1170 +20_10037292_10066351 13494 . G . . END=13496 GT:DP:GQ:MIN_DP:PL 0/0:28:81:28:0,81,1215 +20_10037292_10066351 13497 . A . . END=13508 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,1125 +20_10037292_10066351 13509 . C . . END=13510 GT:DP:GQ:MIN_DP:PL 0/0:28:81:27:0,81,875 +20_10037292_10066351 13511 . C . . END=13513 GT:DP:GQ:MIN_DP:PL 0/0:28:78:28:0,78,1170 +20_10037292_10066351 13514 . A . . END=13517 GT:DP:GQ:MIN_DP:PL 0/0:30:81:29:0,81,1215 +20_10037292_10066351 13518 . T . . END=13518 GT:DP:GQ:MIN_DP:PL 0/0:30:76:30:0,76,931 +20_10037292_10066351 13519 . T . . END=13519 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 13520 . T . . END=13528 GT:DP:GQ:MIN_DP:PL 0/0:28:78:27:0,78,1170 +20_10037292_10066351 13529 . C . . END=13529 GT:DP:GQ:MIN_DP:PL 0/0:27:67:27:0,67,847 +20_10037292_10066351 13530 . T . . END=13534 GT:DP:GQ:MIN_DP:PL 0/0:26:75:26:0,75,862 +20_10037292_10066351 13535 . T . . END=13537 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 +20_10037292_10066351 13538 . G . . END=13538 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,931 +20_10037292_10066351 13539 . G . . END=13539 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,893 +20_10037292_10066351 13540 . A . . END=13542 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,890 +20_10037292_10066351 13543 . C . . END=13543 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,891 +20_10037292_10066351 13544 . A . . END=13544 GT:DP:GQ:MIN_DP:PL 0/0:30:73:30:0,73,870 +20_10037292_10066351 13545 . C . . END=13545 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,818 +20_10037292_10066351 13546 . G . . END=13547 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,840 +20_10037292_10066351 13548 . T . . END=13548 GT:DP:GQ:MIN_DP:PL 0/0:30:87:30:0,87,1305 +20_10037292_10066351 13549 . A . . END=13554 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,1350 +20_10037292_10066351 13555 . A . . END=13555 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 13556 . T . . END=13556 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,969 +20_10037292_10066351 13557 . A . . END=13557 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1019 +20_10037292_10066351 13558 . C . . END=13558 GT:DP:GQ:MIN_DP:PL 0/0:33:85:33:0,85,940 +20_10037292_10066351 13559 . T . . END=13559 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,1012 +20_10037292_10066351 13560 . C . . END=13560 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1034 +20_10037292_10066351 13561 . T . . END=13564 GT:DP:GQ:MIN_DP:PL 0/0:32:93:31:0,93,939 +20_10037292_10066351 13565 . C . . END=13565 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,961 +20_10037292_10066351 13566 . C . . END=13595 GT:DP:GQ:MIN_DP:PL 0/0:37:99:33:0,99,1037 +20_10037292_10066351 13596 . T . . END=13596 GT:DP:GQ:MIN_DP:PL 0/0:38:82:38:0,82,1054 +20_10037292_10066351 13597 . G . . END=13606 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20_10037292_10066351 13607 . G . . END=13626 GT:DP:GQ:MIN_DP:PL 0/0:34:90:31:0,90,1003 +20_10037292_10066351 13627 . A . . END=13627 GT:DP:GQ:MIN_DP:PL 0/0:32:85:32:0,85,973 +20_10037292_10066351 13628 . A . . END=13629 GT:DP:GQ:MIN_DP:PL 0/0:32:93:32:0,93,1395 +20_10037292_10066351 13630 . T . . END=13630 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,886 +20_10037292_10066351 13631 . G . . END=13631 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 13632 . A . . END=13633 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 13634 . G . . END=13634 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 13635 . T . . END=13635 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,888 +20_10037292_10066351 13636 . T . . END=13636 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 13637 . T . . END=13637 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 13638 . G . . END=13641 GT:DP:GQ:MIN_DP:PL 0/0:33:86:31:0,86,974 +20_10037292_10066351 13642 . T . . END=13643 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 13644 . T . . END=13644 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,1305 +20_10037292_10066351 13645 . C . . END=13645 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 13646 . C . . END=13648 GT:DP:GQ:MIN_DP:PL 0/0:33:87:32:0,87,1305 +20_10037292_10066351 13649 . G . . END=13649 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 13650 . C . . END=13651 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 13652 . G . . END=13654 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 13655 . G . . END=13661 GT:DP:GQ:MIN_DP:PL 0/0:31:87:30:0,87,1305 +20_10037292_10066351 13662 . A . . END=13666 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,924 +20_10037292_10066351 13667 . A . . END=13667 GT:DP:GQ:MIN_DP:PL 0/0:29:87:29:0,87,879 +20_10037292_10066351 13668 . A . . END=13668 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,984 +20_10037292_10066351 13669 . G . . END=13669 GT:DP:GQ:MIN_DP:PL 0/0:30:74:30:0,74,931 +20_10037292_10066351 13670 . T . . END=13674 GT:DP:GQ:MIN_DP:PL 0/0:32:90:31:0,90,999 +20_10037292_10066351 13675 . G . . END=13675 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,1018 +20_10037292_10066351 13676 . G . . END=13692 GT:DP:GQ:MIN_DP:PL 0/0:34:90:32:0,90,1081 +20_10037292_10066351 13693 . C . . END=13696 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20_10037292_10066351 13697 . T . . END=13697 GT:DP:GQ:MIN_DP:PL 0/0:36:80:36:0,80,1068 +20_10037292_10066351 13698 . C . . END=13698 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,102,1530 +20_10037292_10066351 13699 . T . . END=13699 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1117 +20_10037292_10066351 13700 . G . . END=13706 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,945 +20_10037292_10066351 13707 . G . . END=13708 GT:DP:GQ:MIN_DP:PL 0/0:35:91:34:0,91,1046 +20_10037292_10066351 13709 . C . . END=13715 GT:DP:GQ:MIN_DP:PL 0/0:43:99:40:0,108,1620 +20_10037292_10066351 13716 . T . . END=13716 GT:DP:GQ:MIN_DP:PL 0/0:43:98:43:0,98,1230 +20_10037292_10066351 13717 . C . . END=13719 GT:DP:GQ:MIN_DP:PL 0/0:40:99:38:0,105,1575 +20_10037292_10066351 13720 . C . . END=13721 GT:DP:GQ:MIN_DP:PL 0/0:38:97:38:0,97,1111 +20_10037292_10066351 13722 . T . . END=13724 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,99,1174 +20_10037292_10066351 13725 . G . . END=13726 GT:DP:GQ:MIN_DP:PL 0/0:38:91:38:0,91,1107 +20_10037292_10066351 13727 . A . . END=13728 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20_10037292_10066351 13729 . T . . END=13729 GT:DP:GQ:MIN_DP:PL 0/0:37:79:37:0,79,981 +20_10037292_10066351 13730 . A . . END=13735 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1056 +20_10037292_10066351 13736 . T . . END=13736 GT:DP:GQ:MIN_DP:PL 0/0:34:75:34:0,75,862 +20_10037292_10066351 13737 . A . . END=13737 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,105,1575 +20_10037292_10066351 13738 . G . . END=13738 GT:DP:GQ:MIN_DP:PL 0/0:37:94:37:0,94,1134 +20_10037292_10066351 13739 . G . . END=13740 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20_10037292_10066351 13741 . T . . END=13741 GT:DP:GQ:MIN_DP:PL 0/0:36:92:36:0,92,1018 +20_10037292_10066351 13742 . G . . END=13745 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 13746 . A . . END=13749 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20_10037292_10066351 13750 . G . . END=13750 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,960 +20_10037292_10066351 13751 . C . . END=13756 GT:DP:GQ:MIN_DP:PL 0/0:34:93:32:0,93,964 +20_10037292_10066351 13757 . A . . END=13757 GT:DP:GQ:MIN_DP:PL 0/0:33:83:33:0,83,875 +20_10037292_10066351 13758 . A . . END=13758 GT:DP:GQ:MIN_DP:PL 0/0:32:96:32:0,96,973 +20_10037292_10066351 13759 . T . . END=13759 GT:DP:GQ:MIN_DP:PL 0/0:32:81:32:0,81,900 +20_10037292_10066351 13760 . G . . END=13761 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 13762 . A . . END=13762 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,932 +20_10037292_10066351 13763 . C . . END=13763 GT:DP:GQ:MIN_DP:PL 0/0:33:53:33:0,53,879 +20_10037292_10066351 13764 . A . . END=13764 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 13765 . T . . END=13765 GT:DP:GQ:MIN_DP:PL 0/0:33:30:33:0,30,748 +20_10037292_10066351 13766 . G . . END=13769 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 13770 . G . . END=13770 GT:DP:GQ:MIN_DP:PL 0/0:34:68:34:0,68,975 +20_10037292_10066351 13771 . G . . END=13771 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 13772 . T . . END=13773 GT:DP:GQ:MIN_DP:PL 0/0:34:75:34:0,75,924 +20_10037292_10066351 13774 . A . . END=13774 GT:DP:GQ:MIN_DP:PL 0/0:33:98:33:0,98,959 +20_10037292_10066351 13775 . T . . END=13775 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,970 +20_10037292_10066351 13776 . A . . END=13776 GT:DP:GQ:MIN_DP:PL 0/0:33:98:33:0,98,893 +20_10037292_10066351 13777 . A . . END=13777 GT:DP:GQ:MIN_DP:PL 0/0:33:72:33:0,72,923 +20_10037292_10066351 13778 . G . . END=13778 GT:DP:GQ:MIN_DP:PL 0/0:33:82:33:0,82,997 +20_10037292_10066351 13779 . C . . END=13788 GT:DP:GQ:MIN_DP:PL 0/0:33:91:32:0,91,956 +20_10037292_10066351 13789 . T . . END=13789 GT:DP:GQ:MIN_DP:PL 0/0:34:99:34:0,99,1485 +20_10037292_10066351 13790 . T . . END=13800 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,962 +20_10037292_10066351 13801 . A . . END=13801 GT:DP:GQ:MIN_DP:PL 0/0:34:72:34:0,72,920 +20_10037292_10066351 13802 . C . . END=13802 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 13803 . C . . END=13803 GT:DP:GQ:MIN_DP:PL 0/0:32:76:32:0,76,973 +20_10037292_10066351 13804 . A . . END=13804 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 13805 . G . . END=13806 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 13807 . C . . END=13807 GT:DP:GQ:MIN_DP:PL 0/0:32:78:32:0,78,908 +20_10037292_10066351 13808 . T . . END=13808 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 13809 . C . . END=13809 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,903 +20_10037292_10066351 13810 . A . . END=13810 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 13811 . C . . END=13811 GT:DP:GQ:MIN_DP:PL 0/0:31:71:31:0,71,847 +20_10037292_10066351 13812 . T . . END=13814 GT:DP:GQ:MIN_DP:PL 0/0:30:84:29:0,84,1260 +20_10037292_10066351 13815 . C . . END=13815 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,877 +20_10037292_10066351 13816 . A . . END=13819 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20_10037292_10066351 13820 . T . . END=13820 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,877 +20_10037292_10066351 13821 . T . . END=13821 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20_10037292_10066351 13822 . A . . END=13822 GT:DP:GQ:MIN_DP:PL 0/0:30:78:30:0,78,1170 +20_10037292_10066351 13823 . C . . END=13823 GT:DP:GQ:MIN_DP:PL 0/0:31:81:31:0,81,1215 +20_10037292_10066351 13824 . T . . END=13825 GT:DP:GQ:MIN_DP:PL 0/0:31:78:30:0,78,852 +20_10037292_10066351 13826 . C . . END=13830 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,881 +20_10037292_10066351 13831 . G . . END=13831 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,867 +20_10037292_10066351 13832 . T . . END=13832 GT:DP:GQ:MIN_DP:PL 0/0:31:58:31:0,58,806 +20_10037292_10066351 13833 . T . . END=13834 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,1350 +20_10037292_10066351 13835 . G . . END=13836 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 13837 . G . . END=13837 GT:DP:GQ:MIN_DP:PL 0/0:32:71:32:0,71,944 +20_10037292_10066351 13838 . A . . END=13845 GT:DP:GQ:MIN_DP:PL 0/0:32:80:31:0,80,959 +20_10037292_10066351 13846 . T . . END=13846 GT:DP:GQ:MIN_DP:PL 0/0:30:60:30:0,60,884 +20_10037292_10066351 13847 . T . . END=13847 GT:DP:GQ:MIN_DP:PL 0/0:33:90:33:0,90,1350 +20_10037292_10066351 13848 . G . . END=13853 GT:DP:GQ:MIN_DP:PL 0/0:34:81:33:0,81,987 +20_10037292_10066351 13854 . A . . END=13857 GT:DP:GQ:MIN_DP:PL 0/0:33:78:32:0,78,1170 +20_10037292_10066351 13858 . A . . END=13858 GT:DP:GQ:MIN_DP:PL 0/0:35:84:35:0,84,1260 +20_10037292_10066351 13859 . T . . END=13859 GT:DP:GQ:MIN_DP:PL 0/0:37:90:37:0,90,1350 +20_10037292_10066351 13860 . T . . END=13860 GT:DP:GQ:MIN_DP:PL 0/0:34:88:34:0,88,994 +20_10037292_10066351 13861 . C . . END=13863 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20_10037292_10066351 13864 . A . . END=13864 GT:DP:GQ:MIN_DP:PL 0/0:34:77:34:0,77,978 +20_10037292_10066351 13865 . C . . END=13867 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 13868 . T . . END=13868 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,998 +20_10037292_10066351 13869 . G . . END=13874 GT:DP:GQ:MIN_DP:PL 0/0:31:80:31:0,80,925 +20_10037292_10066351 13875 . A . . END=13875 GT:DP:GQ:MIN_DP:PL 0/0:31:79:31:0,79,910 +20_10037292_10066351 13876 . A . . END=13880 GT:DP:GQ:MIN_DP:PL 0/0:29:81:29:0,81,1215 +20_10037292_10066351 13881 . A . . END=13881 GT:DP:GQ:MIN_DP:PL 0/0:29:68:29:0,68,849 +20_10037292_10066351 13882 . C . . END=13883 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 13884 . T . . END=13885 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 13886 . A . . END=13886 GT:DP:GQ:MIN_DP:PL 0/0:32:73:32:0,73,975 +20_10037292_10066351 13887 . G . . END=13892 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,896 +20_10037292_10066351 13893 . G . . END=13893 GT:DP:GQ:MIN_DP:PL 0/0:33:75:33:0,75,973 +20_10037292_10066351 13894 . T . . END=13895 GT:DP:GQ:MIN_DP:PL 0/0:33:90:32:0,90,1350 +20_10037292_10066351 13896 . A . . END=13896 GT:DP:GQ:MIN_DP:PL 0/0:33:69:33:0,69,960 +20_10037292_10066351 13897 . T . . END=13897 GT:DP:GQ:MIN_DP:PL 0/0:32:70:32:0,70,922 +20_10037292_10066351 13898 . T . . END=13898 GT:DP:GQ:MIN_DP:PL 0/0:33:87:33:0,87,971 +20_10037292_10066351 13899 . T . . END=13900 GT:DP:GQ:MIN_DP:PL 0/0:34:93:34:0,93,1395 +20_10037292_10066351 13901 . T . . END=13901 GT:DP:GQ:MIN_DP:PL 0/0:33:66:33:0,66,978 +20_10037292_10066351 13902 . A . . END=13902 GT:DP:GQ:MIN_DP:PL 0/0:32:84:32:0,84,924 +20_10037292_10066351 13903 . A . . END=13903 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 13904 . A . . END=13905 GT:DP:GQ:MIN_DP:PL 0/0:32:87:31:0,87,1305 +20_10037292_10066351 13906 . A . . END=13906 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 13907 . A . . END=13907 GT:DP:GQ:MIN_DP:PL 0/0:32:79:32:0,79,932 +20_10037292_10066351 13908 . A . . END=13909 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 13910 . G . . END=13912 GT:DP:GQ:MIN_DP:PL 0/0:32:83:32:0,83,950 +20_10037292_10066351 13913 . G . . END=13914 GT:DP:GQ:MIN_DP:PL 0/0:31:76:30:0,76,876 +20_10037292_10066351 13915 . T . . END=13915 GT:DP:GQ:MIN_DP:PL 0/0:32:82:32:0,82,967 +20_10037292_10066351 13916 . T . . END=13920 GT:DP:GQ:MIN_DP:PL 0/0:34:93:33:0,93,1395 +20_10037292_10066351 13921 . G . . END=13921 GT:DP:GQ:MIN_DP:PL 0/0:32:46:32:0,46,838 +20_10037292_10066351 13922 . G . . END=13922 GT:DP:GQ:MIN_DP:PL 0/0:33:69:33:0,69,895 +20_10037292_10066351 13923 . C . . END=13923 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 13924 . T . . END=13924 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1032 +20_10037292_10066351 13925 . C . . END=13925 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,105,1575 +20_10037292_10066351 13926 . A . . END=13926 GT:DP:GQ:MIN_DP:PL 0/0:34:57:34:0,57,966 +20_10037292_10066351 13927 . C . . END=13927 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,104,1029 +20_10037292_10066351 13928 . A . . END=13928 GT:DP:GQ:MIN_DP:PL 0/0:34:84:34:0,84,1038 +20_10037292_10066351 13929 . G . . END=13929 GT:DP:GQ:MIN_DP:PL 0/0:35:74:35:0,74,1017 +20_10037292_10066351 13930 . T . . END=13931 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,99,1485 +20_10037292_10066351 13932 . C . . END=13933 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1045 +20_10037292_10066351 13934 . G . . END=13934 GT:DP:GQ:MIN_DP:PL 0/0:35:83:35:0,83,1030 +20_10037292_10066351 13935 . C . . END=13936 GT:DP:GQ:MIN_DP:PL 0/0:35:90:35:0,90,1052 +20_10037292_10066351 13937 . G . . END=13937 GT:DP:GQ:MIN_DP:PL 0/0:35:77:35:0,77,1064 +20_10037292_10066351 13938 . G . . END=13938 GT:DP:GQ:MIN_DP:PL 0/0:35:89:35:0,89,991 +20_10037292_10066351 13939 . C . . END=13939 GT:DP:GQ:MIN_DP:PL 0/0:35:96:35:0,96,1440 +20_10037292_10066351 13940 . T . . END=13941 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 13942 . T . . END=13943 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20_10037292_10066351 13944 . C . . END=13944 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,1007 +20_10037292_10066351 13945 . A . . END=13946 GT:DP:GQ:MIN_DP:PL 0/0:33:96:33:0,96,1440 +20_10037292_10066351 13947 . G . . END=13953 GT:DP:GQ:MIN_DP:PL 0/0:37:99:35:0,102,1156 +20_10037292_10066351 13954 . A . . END=13954 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1054 +20_10037292_10066351 13955 . G . . END=13958 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,102,1530 +20_10037292_10066351 13959 . C . . END=13959 GT:DP:GQ:MIN_DP:PL 0/0:39:92:39:0,92,1165 +20_10037292_10066351 13960 . T . . END=13965 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,101,1101 +20_10037292_10066351 13966 . C . . END=13966 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1180 +20_10037292_10066351 13967 . T . . END=13967 GT:DP:GQ:MIN_DP:PL 0/0:37:77:37:0,77,1064 +20_10037292_10066351 13968 . C . . END=13969 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,111,1155 +20_10037292_10066351 13970 . G . . END=13970 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1159 +20_10037292_10066351 13971 . G . . END=13971 GT:DP:GQ:MIN_DP:PL 0/0:37:82:37:0,82,1061 +20_10037292_10066351 13972 . G . . END=13972 GT:DP:GQ:MIN_DP:PL 0/0:36:90:36:0,90,1094 +20_10037292_10066351 13973 . G . . END=13975 GT:DP:GQ:MIN_DP:PL 0/0:37:99:36:0,105,1575 +20_10037292_10066351 13976 . A . . END=13976 GT:DP:GQ:MIN_DP:PL 0/0:39:93:39:0,93,1112 +20_10037292_10066351 13977 . C . . END=13979 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,108,1620 +20_10037292_10066351 13980 . C . . END=13980 GT:DP:GQ:MIN_DP:PL 0/0:39:87:39:0,87,1102 +20_10037292_10066351 13981 . A . . END=13985 GT:DP:GQ:MIN_DP:PL 0/0:38:99:36:0,102,1530 +20_10037292_10066351 13986 . G . . END=13987 GT:DP:GQ:MIN_DP:PL 0/0:37:94:36:0,94,1097 +20_10037292_10066351 13988 . T . . END=13988 GT:DP:GQ:MIN_DP:PL 0/0:37:88:37:0,88,1106 +20_10037292_10066351 13989 . T . . END=13995 GT:DP:GQ:MIN_DP:PL 0/0:35:92:34:0,92,1082 +20_10037292_10066351 13996 . A . . END=13999 GT:DP:GQ:MIN_DP:PL 0/0:37:99:34:0,102,1029 +20_10037292_10066351 14000 . C . . END=14004 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1395 +20_10037292_10066351 14005 . G . . END=14005 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,99,1485 +20_10037292_10066351 14006 . G . . END=14006 GT:DP:GQ:MIN_DP:PL 0/0:38:70:38:0,70,1092 +20_10037292_10066351 14007 . C . . END=14007 GT:DP:GQ:MIN_DP:PL 0/0:38:98:38:0,98,1050 +20_10037292_10066351 14008 . A . . END=14010 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1485 +20_10037292_10066351 14011 . G . . END=14011 GT:DP:GQ:MIN_DP:PL 0/0:33:65:33:0,65,969 +20_10037292_10066351 14012 . G . . END=14012 GT:DP:GQ:MIN_DP:PL 0/0:33:99:33:0,99,1016 +20_10037292_10066351 14013 . G . . END=14014 GT:DP:GQ:MIN_DP:PL 0/0:34:85:34:0,85,962 +20_10037292_10066351 14015 . C . . END=14015 GT:DP:GQ:MIN_DP:PL 0/0:35:61:35:0,61,980 +20_10037292_10066351 14016 . A . . END=14016 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,108,1160 +20_10037292_10066351 14017 . G . . END=14017 GT:DP:GQ:MIN_DP:PL 0/0:36:93:36:0,93,1129 +20_10037292_10066351 14018 . C . . END=14018 GT:DP:GQ:MIN_DP:PL 0/0:35:99:35:0,104,884 +20_10037292_10066351 14019 . G . . END=14019 GT:DP:GQ:MIN_DP:PL 0/0:37:96:37:0,96,1038 +20_10037292_10066351 14020 . A . . END=14020 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,114,1158 +20_10037292_10066351 14021 . G . . END=14022 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1108 +20_10037292_10066351 14023 . C . . END=14026 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,100,1138 +20_10037292_10066351 14027 . T . . END=14027 GT:DP:GQ:MIN_DP:PL 0/0:38:84:38:0,84,1053 +20_10037292_10066351 14028 . C . . END=14030 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,101,1155 +20_10037292_10066351 14031 . G . . END=14031 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1034 +20_10037292_10066351 14032 . G . . END=14042 GT:DP:GQ:MIN_DP:PL 0/0:43:99:38:0,102,1197 +20_10037292_10066351 14043 . A . . END=14043 GT:DP:GQ:MIN_DP:PL 0/0:41:97:41:0,97,1196 +20_10037292_10066351 14044 . A . . END=14044 GT:DP:GQ:MIN_DP:PL 0/0:42:99:42:0,117,1755 +20_10037292_10066351 14045 . G . . END=14045 GT:DP:GQ:MIN_DP:PL 0/0:42:98:42:0,98,1338 +20_10037292_10066351 14046 . A . . END=14047 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,117,1755 +20_10037292_10066351 14048 . G . . END=14048 GT:DP:GQ:MIN_DP:PL 0/0:41:98:41:0,98,1245 +20_10037292_10066351 14049 . A . . END=14049 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,117,1755 +20_10037292_10066351 14050 . G . . END=14050 GT:DP:GQ:MIN_DP:PL 0/0:39:74:39:0,74,1093 +20_10037292_10066351 14051 . A . . END=14051 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,117,1234 +20_10037292_10066351 14052 . G . . END=14052 GT:DP:GQ:MIN_DP:PL 0/0:40:88:40:0,88,1192 +20_10037292_10066351 14053 . A . . END=14060 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,107,1225 +20_10037292_10066351 14061 . G . . END=14062 GT:DP:GQ:MIN_DP:PL 0/0:41:90:41:0,90,1200 +20_10037292_10066351 14063 . G . . END=14066 GT:DP:GQ:MIN_DP:PL 0/0:43:99:41:0,102,1263 +20_10037292_10066351 14067 . C . . END=14067 GT:DP:GQ:MIN_DP:PL 0/0:40:93:40:0,93,1199 +20_10037292_10066351 14068 . C . . END=14172 GT:DP:GQ:MIN_DP:PL 0/0:45:99:38:0,99,1117 +20_10037292_10066351 14173 . T . . END=14173 GT:DP:GQ:MIN_DP:PL 0/0:45:78:45:0,78,1309 +20_10037292_10066351 14174 . C . . END=14190 GT:DP:GQ:MIN_DP:PL 0/0:45:99:38:0,108,1227 +20_10037292_10066351 14191 . C . . END=14191 GT:DP:GQ:MIN_DP:PL 0/0:38:65:38:0,65,1134 +20_10037292_10066351 14192 . T . . END=14198 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1137 +20_10037292_10066351 14199 . A . . END=14199 GT:DP:GQ:MIN_DP:PL 0/0:39:72:39:0,72,1156 +20_10037292_10066351 14200 . C . . END=14212 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1266 +20_10037292_10066351 14213 . G . . END=14213 GT:DP:GQ:MIN_DP:PL 0/0:37:91:37:0,91,1138 +20_10037292_10066351 14214 . T . . END=14214 GT:DP:GQ:MIN_DP:PL 0/0:36:76:36:0,76,1093 +20_10037292_10066351 14215 . G . . END=14216 GT:DP:GQ:MIN_DP:PL 0/0:36:99:36:0,99,1485 +20_10037292_10066351 14217 . T . . END=14221 GT:DP:GQ:MIN_DP:PL 0/0:36:93:35:0,93,1395 +20_10037292_10066351 14222 . G . . END=14228 GT:DP:GQ:MIN_DP:PL 0/0:36:99:34:0,99,1069 +20_10037292_10066351 14229 . C . . END=14229 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,1031 +20_10037292_10066351 14230 . A . . END=14238 GT:DP:GQ:MIN_DP:PL 0/0:35:99:33:0,99,1036 +20_10037292_10066351 14239 . T . . END=14239 GT:DP:GQ:MIN_DP:PL 0/0:35:87:35:0,87,1067 +20_10037292_10066351 14240 . T . . END=14243 GT:DP:GQ:MIN_DP:PL 0/0:36:99:33:0,99,1029 +20_10037292_10066351 14244 . A . . END=14244 GT:DP:GQ:MIN_DP:PL 0/0:35:79:35:0,79,1043 +20_10037292_10066351 14245 . T . . END=14246 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1038 +20_10037292_10066351 14247 . A . . END=14249 GT:DP:GQ:MIN_DP:PL 0/0:34:90:34:0,90,1052 +20_10037292_10066351 14250 . T . . END=14250 GT:DP:GQ:MIN_DP:PL 0/0:34:87:34:0,87,995 +20_10037292_10066351 14251 . T . . END=14253 GT:DP:GQ:MIN_DP:PL 0/0:35:90:34:0,90,1350 +20_10037292_10066351 14254 . G . . END=14254 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,1260 +20_10037292_10066351 14255 . G . . END=14259 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,1015 +20_10037292_10066351 14260 . G . . END=14260 GT:DP:GQ:MIN_DP:PL 0/0:32:61:32:0,61,918 +20_10037292_10066351 14261 . A . . END=14261 GT:DP:GQ:MIN_DP:PL 0/0:33:78:33:0,78,1170 +20_10037292_10066351 14262 . C . . END=14266 GT:DP:GQ:MIN_DP:PL 0/0:32:81:29:0,81,1215 +20_10037292_10066351 14267 . A . . END=14268 GT:DP:GQ:MIN_DP:PL 0/0:29:72:29:0,72,882 +20_10037292_10066351 14269 . C . . END=14269 GT:DP:GQ:MIN_DP:PL 0/0:28:69:28:0,69,828 +20_10037292_10066351 14270 . C . . END=14273 GT:DP:GQ:MIN_DP:PL 0/0:28:75:27:0,75,1125 +20_10037292_10066351 14274 . C . . END=14274 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 14275 . C . . END=14277 GT:DP:GQ:MIN_DP:PL 0/0:30:72:30:0,72,1080 +20_10037292_10066351 14278 . A . . END=14282 GT:DP:GQ:MIN_DP:PL 0/0:30:81:30:0,81,1215 +20_10037292_10066351 14283 . A . . END=14283 GT:DP:GQ:MIN_DP:PL 0/0:30:58:30:0,58,834 +20_10037292_10066351 14284 . A . . END=14286 GT:DP:GQ:MIN_DP:PL 0/0:27:81:27:0,81,900 +20_10037292_10066351 14287 . T . . END=14288 GT:DP:GQ:MIN_DP:PL 0/0:27:75:27:0,75,1125 +20_10037292_10066351 14289 . A . . END=14289 GT:DP:GQ:MIN_DP:PL 0/0:27:55:27:0,55,782 +20_10037292_10066351 14290 . T . . END=14291 GT:DP:GQ:MIN_DP:PL 0/0:29:72:26:0,72,945 +20_10037292_10066351 14292 . G . . END=14294 GT:DP:GQ:MIN_DP:PL 0/0:31:81:30:0,81,1215 +20_10037292_10066351 14295 . T . . END=14295 GT:DP:GQ:MIN_DP:PL 0/0:31:35:31:0,35,906 +20_10037292_10066351 14296 . A . . END=14303 GT:DP:GQ:MIN_DP:PL 0/0:32:74:30:0,74,999 +20_10037292_10066351 14304 . C . . END=14309 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,909 +20_10037292_10066351 14310 . A . . END=14310 GT:DP:GQ:MIN_DP:PL 0/0:28:70:28:0,70,859 +20_10037292_10066351 14311 . A . . END=14319 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,942 +20_10037292_10066351 14320 . C . . END=14321 GT:DP:GQ:MIN_DP:PL 0/0:30:90:30:0,90,954 +20_10037292_10066351 14322 . A . . END=14326 GT:DP:GQ:MIN_DP:PL 0/0:31:84:31:0,84,1260 +20_10037292_10066351 14327 . G . . END=14327 GT:DP:GQ:MIN_DP:PL 0/0:31:32:31:0,32,833 +20_10037292_10066351 14328 . C . . END=14328 GT:DP:GQ:MIN_DP:PL 0/0:32:87:32:0,87,1305 +20_10037292_10066351 14329 . A . . END=14329 GT:DP:GQ:MIN_DP:PL 0/0:33:72:33:0,72,1013 +20_10037292_10066351 14330 . C . . END=14333 GT:DP:GQ:MIN_DP:PL 0/0:34:93:32:0,93,1033 +20_10037292_10066351 14334 . A . . END=14334 GT:DP:GQ:MIN_DP:PL 0/0:33:84:33:0,84,955 +20_10037292_10066351 14335 . T . . END=14335 GT:DP:GQ:MIN_DP:PL 0/0:33:77:33:0,77,965 +20_10037292_10066351 14336 . G . . END=14339 GT:DP:GQ:MIN_DP:PL 0/0:34:99:33:0,99,1019 +20_10037292_10066351 14340 . T . . END=14340 GT:DP:GQ:MIN_DP:PL 0/0:33:68:33:0,68,976 +20_10037292_10066351 14341 . A . . END=14350 GT:DP:GQ:MIN_DP:PL 0/0:40:99:34:0,102,1084 +20_10037292_10066351 14351 . G . . END=14351 GT:DP:GQ:MIN_DP:PL 0/0:40:95:40:0,95,1166 +20_10037292_10066351 14352 . G . . END=14352 GT:DP:GQ:MIN_DP:PL 0/0:40:99:40:0,120,1202 +20_10037292_10066351 14353 . T . . END=14353 GT:DP:GQ:MIN_DP:PL 0/0:40:67:40:0,67,1126 +20_10037292_10066351 14354 . T . . END=14363 GT:DP:GQ:MIN_DP:PL 0/0:41:99:40:0,114,1710 +20_10037292_10066351 14364 . C . . END=14364 GT:DP:GQ:MIN_DP:PL 0/0:41:46:41:0,46,1080 +20_10037292_10066351 14365 . A . . END=14370 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,111,1665 +20_10037292_10066351 14371 . G . . END=14371 GT:DP:GQ:MIN_DP:PL 0/0:43:97:43:0,97,1319 +20_10037292_10066351 14372 . C . . END=14372 GT:DP:GQ:MIN_DP:PL 0/0:44:65:44:0,65,1169 +20_10037292_10066351 14373 . A . . END=14373 GT:DP:GQ:MIN_DP:PL 0/0:42:49:42:0,49,1182 +20_10037292_10066351 14374 . T . . END=14445 GT:DP:GQ:MIN_DP:PL 0/0:41:99:37:0,99,1113 +20_10037292_10066351 14446 . C . . END=14452 GT:DP:GQ:MIN_DP:PL 0/0:35:96:34:0,96,1440 +20_10037292_10066351 14453 . C . . END=14455 GT:DP:GQ:MIN_DP:PL 0/0:35:99:34:0,99,1485 +20_10037292_10066351 14456 . T . . END=14457 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20_10037292_10066351 14458 . A . . END=14466 GT:DP:GQ:MIN_DP:PL 0/0:36:99:35:0,99,1485 +20_10037292_10066351 14467 . T . . END=14467 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20_10037292_10066351 14468 . A . . END=14468 GT:DP:GQ:MIN_DP:PL 0/0:34:47:34:0,47,924 +20_10037292_10066351 14469 . C . . END=14473 GT:DP:GQ:MIN_DP:PL 0/0:35:93:34:0,93,1395 +20_10037292_10066351 14474 . A . . END=14480 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,99,1485 +20_10037292_10066351 14481 . A . . END=14481 GT:DP:GQ:MIN_DP:PL 0/0:38:78:38:0,78,1121 +20_10037292_10066351 14482 . T . . END=14483 GT:DP:GQ:MIN_DP:PL 0/0:38:99:38:0,102,1530 +20_10037292_10066351 14484 . A . . END=14485 GT:DP:GQ:MIN_DP:PL 0/0:40:93:39:0,93,1395 +20_10037292_10066351 14486 . A . . END=14486 GT:DP:GQ:MIN_DP:PL 0/0:43:99:43:0,105,1575 +20_10037292_10066351 14487 . C . . END=14487 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1206 +20_10037292_10066351 14488 . A . . END=14488 GT:DP:GQ:MIN_DP:PL 0/0:41:99:41:0,108,1620 +20_10037292_10066351 14489 . T . . END=14489 GT:DP:GQ:MIN_DP:PL 0/0:41:91:41:0,91,1263 +20_10037292_10066351 14490 . G . . END=14499 GT:DP:GQ:MIN_DP:PL 0/0:39:99:37:0,100,1154 +20_10037292_10066351 14500 . G . . END=14501 GT:DP:GQ:MIN_DP:PL 0/0:38:96:38:0,96,1171 +20_10037292_10066351 14502 . C . . END=14505 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,111,1665 +20_10037292_10066351 14506 . C . . END=14506 GT:DP:GQ:MIN_DP:PL 0/0:39:98:39:0,98,1092 +20_10037292_10066351 14507 . G . . END=14511 GT:DP:GQ:MIN_DP:PL 0/0:39:99:38:0,105,1217 +20_10037292_10066351 14512 . T . . END=14512 GT:DP:GQ:MIN_DP:PL 0/0:39:95:39:0,95,1193 +20_10037292_10066351 14513 . A . . END=14515 GT:DP:GQ:MIN_DP:PL 0/0:39:99:39:0,105,1575 +20_10037292_10066351 14516 . T . . END=14516 GT:DP:GQ:MIN_DP:PL 0/0:41:97:41:0,97,1234 +20_10037292_10066351 14517 . C . . END=14522 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,108,1620 +20_10037292_10066351 14523 . T . . END=14523 GT:DP:GQ:MIN_DP:PL 0/0:41:44:41:0,44,1133 +20_10037292_10066351 14524 . T . . END=14524 GT:DP:GQ:MIN_DP:PL 0/0:41:88:41:0,88,1204 +20_10037292_10066351 14525 . T . . END=14527 GT:DP:GQ:MIN_DP:PL 0/0:42:99:41:0,114,1354 +20_10037292_10066351 14528 . T . . END=14528 GT:DP:GQ:MIN_DP:PL 0/0:42:80:42:0,80,1203 +20_10037292_10066351 14529 . T . . END=14539 GT:DP:GQ:MIN_DP:PL 0/0:43:99:42:0,99,1258 +20_10037292_10066351 14540 . G . . END=14540 GT:DP:GQ:MIN_DP:PL 0/0:43:62:43:0,62,1280 +20_10037292_10066351 14541 . G . . END=14541 GT:DP:GQ:MIN_DP:PL 0/0:44:89:44:0,89,1287 +20_10037292_10066351 14542 . T . . END=14556 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,100,1290 +20_10037292_10066351 14557 . T . . END=14557 GT:DP:GQ:MIN_DP:PL 0/0:42:92:42:0,92,1329 +20_10037292_10066351 14558 . C . . END=14560 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,115,1319 +20_10037292_10066351 14561 . A . . END=14562 GT:DP:GQ:MIN_DP:PL 0/0:44:90:43:0,90,1314 +20_10037292_10066351 14563 . A . . END=14569 GT:DP:GQ:MIN_DP:PL 0/0:44:99:43:0,115,1304 +20_10037292_10066351 14570 . C . . END=14570 GT:DP:GQ:MIN_DP:PL 0/0:43:79:43:0,79,1226 +20_10037292_10066351 14571 . A . . END=14595 GT:DP:GQ:MIN_DP:PL 0/0:41:99:39:0,102,1217 +20_10037292_10066351 14596 . C . . END=14596 GT:DP:GQ:MIN_DP:PL 0/0:40:50:40:0,50,1165 +20_10037292_10066351 14597 . A . . END=14603 GT:DP:GQ:MIN_DP:PL 0/0:40:99:39:0,103,1231 +20_10037292_10066351 14604 . C . . END=14604 GT:DP:GQ:MIN_DP:PL 0/0:39:95:39:0,95,1249 +20_10037292_10066351 14605 . T . . END=14609 GT:DP:GQ:MIN_DP:PL 0/0:38:99:37:0,102,1250 +20_10037292_10066351 14610 . A . . END=14610 GT:DP:GQ:MIN_DP:PL 0/0:37:98:37:0,98,1166 +20_10037292_10066351 14611 . C . . END=14611 GT:DP:GQ:MIN_DP:PL 0/0:37:78:37:0,78,1128 +20_10037292_10066351 14612 . A . . END=14612 GT:DP:GQ:MIN_DP:PL 0/0:37:99:37:0,99,1485 +20_10037292_10066351 14613 . T . . END=14615 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1133 +20_10037292_10066351 14616 . C . . END=14616 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1152 +20_10037292_10066351 14617 . T . . END=14619 GT:DP:GQ:MIN_DP:PL 0/0:36:94:36:0,94,1134 +20_10037292_10066351 14620 . T . . END=14620 GT:DP:GQ:MIN_DP:PL 0/0:36:78:36:0,78,1075 +20_10037292_10066351 14621 . C . . END=14622 GT:DP:GQ:MIN_DP:PL 0/0:37:90:36:0,90,1111 +20_10037292_10066351 14623 . C . . END=14623 GT:DP:GQ:MIN_DP:PL 0/0:37:81:37:0,81,1154 +20_10037292_10066351 14624 . C . . END=14624 GT:DP:GQ:MIN_DP:PL 0/0:36:96:36:0,96,1440 +20_10037292_10066351 14625 . T . . END=14636 GT:DP:GQ:MIN_DP:PL 0/0:34:81:31:0,81,1132 +20_10037292_10066351 14637 . A . . END=14638 GT:DP:GQ:MIN_DP:PL 0/0:29:78:29:0,78,1170 +20_10037292_10066351 14639 . T . . END=14644 GT:DP:GQ:MIN_DP:PL 0/0:29:81:28:0,81,1215 +20_10037292_10066351 14645 . G . . END=14655 GT:DP:GQ:MIN_DP:PL 0/0:28:75:26:0,75,825 +20_10037292_10066351 14656 . C . . END=14665 GT:DP:GQ:MIN_DP:PL 0/0:26:63:26:0,63,945 +20_10037292_10066351 14666 . A . . END=14666 GT:DP:GQ:MIN_DP:PL 0/0:22:54:22:0,54,659 +20_10037292_10066351 14667 . T . . END=14668 GT:DP:GQ:MIN_DP:PL 0/0:24:66:23:0,66,990 +20_10037292_10066351 14669 . T . . END=14672 GT:DP:GQ:MIN_DP:PL 0/0:23:57:21:0,57,702 +20_10037292_10066351 14673 . T . . END=14673 GT:DP:GQ:MIN_DP:PL 0/0:23:43:23:0,43,645 +20_10037292_10066351 14674 . G . . END=14692 GT:DP:GQ:MIN_DP:PL 0/0:24:60:23:0,60,776 +20_10037292_10066351 14693 . T . . END=14697 GT:DP:GQ:MIN_DP:PL 0/0:24:72:24:0,72,718 +20_10037292_10066351 14698 . A . . END=14698 GT:DP:GQ:MIN_DP:PL 0/0:28:84:28:0,84,913 +20_10037292_10066351 14699 . T . . END=14699 GT:DP:GQ:MIN_DP:PL 0/0:28:71:28:0,71,850 +20_10037292_10066351 14700 . A . . END=14703 GT:DP:GQ:MIN_DP:PL 0/0:31:90:30:0,90,927 +20_10037292_10066351 14704 . A . . END=14704 GT:DP:GQ:MIN_DP:PL 0/0:31:66:31:0,66,939 +20_10037292_10066351 14705 . A . . END=14712 GT:DP:GQ:MIN_DP:PL 0/0:31:90:31:0,90,954 +20_10037292_10066351 14713 . T . . END=14713 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,944 +20_10037292_10066351 14714 . T . . END=14714 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 14715 . A . . END=14715 GT:DP:GQ:MIN_DP:PL 0/0:31:73:31:0,73,932 +20_10037292_10066351 14716 . C . . END=14722 GT:DP:GQ:MIN_DP:PL 0/0:31:84:30:0,84,1260 +20_10037292_10066351 14723 . T . . END=14723 GT:DP:GQ:MIN_DP:PL 0/0:31:77:31:0,77,948 +20_10037292_10066351 14724 . T . . END=14726 GT:DP:GQ:MIN_DP:PL 0/0:29:84:29:0,84,1260 +20_10037292_10066351 14727 . T . . END=14727 GT:DP:GQ:MIN_DP:PL 0/0:31:78:31:0,78,941 +20_10037292_10066351 14728 . T . . END=14730 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 14731 . A . . END=14731 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 +20_10037292_10066351 14732 . G . . END=14734 GT:DP:GQ:MIN_DP:PL 0/0:31:82:30:0,82,942 +20_10037292_10066351 14735 . G . . END=14735 GT:DP:GQ:MIN_DP:PL 0/0:30:75:30:0,75,893 +20_10037292_10066351 14736 . C . . END=14736 GT:DP:GQ:MIN_DP:PL 0/0:31:87:31:0,87,1305 +20_10037292_10066351 14737 . A . . END=14737 GT:DP:GQ:MIN_DP:PL 0/0:32:90:32:0,90,1350 diff --git a/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_son.bam.g.vcf.idx b/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/inputs/reads_son.bam.g.vcf.idx new file mode 100644 index 0000000000000000000000000000000000000000..1becaec1866d7a03bab51574f99a47c9a1da7dc3 GIT binary patch literal 807 zcmZwF%WD%+6bA55gBwxQih^3TzCr0c?mRLRL=8>U_=r*`r3-PGCNphXGto?}OWpXW zVxxk8VZ5t^@SnvoW+XfJHruyhDlvs@g_XT4Hy-anNu9`la-r}Nn& zbX!v#%@HE)n2xUL#=og^Ue3?u`(Rp%E?m<|>!vBJv@J}u8~A^k_GNnu*U++5+rb2fXM2#wHlxb)gfO zTMcxt0Y3Lj`^Mb+Rlpbe*@M!?m{XY9%l*?$X)W6At-zt}z}I)u4BAWfzeQhsD(xrj zFf+4V!1_gLU9>m5fNQ&fhYdO36wkf66WC9m$w=GG+$Vm+4f?Nb(q@@Ez|3pbLZ7r( zv>5|TcE--po+7Rt7pC?%J_oTH){|yef BpXdMp literal 0 HcmV?d00001 diff --git a/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/main.nf.test b/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/main.nf.test new file mode 100644 index 000000000..ab353f39e --- /dev/null +++ b/nf4-science/genomics/solutions/modules/gatk/jointgenotyping/tests/main.nf.test @@ -0,0 +1,42 @@ +nextflow_process { + + name "Test Process GATK_JOINTGENOTYPING" + script "../main.nf" + process "GATK_JOINTGENOTYPING" + + test("Should call trio's joint genotype correctly") { + + when { + params { + outdir = "tests/results" + } + process { + """ + input[0] = [ + file("${projectDir}/modules/gatk/jointgenotyping/tests/inputs/reads_father.bam.g.vcf"), + file("${projectDir}/modules/gatk/jointgenotyping/tests/inputs/reads_mother.bam.g.vcf"), + file("${projectDir}/modules/gatk/jointgenotyping/tests/inputs/reads_son.bam.g.vcf") + ] + input[1] = [ + file("${projectDir}/modules/gatk/jointgenotyping/tests/inputs/reads_father.bam.g.vcf.idx"), + file("${projectDir}/modules/gatk/jointgenotyping/tests/inputs/reads_mother.bam.g.vcf.idx"), + file("${projectDir}/modules/gatk/jointgenotyping/tests/inputs/reads_son.bam.g.vcf.idx") + ] + input[2] = file("${projectDir}/data/ref/intervals.bed") + input[3] = "family_trio" + input[4] = file("${projectDir}/data/ref/ref.fasta") + input[5] = file("${projectDir}/data/ref/ref.fasta.fai") + input[6] = file("${projectDir}/data/ref/ref.dict") + """ + } + } + + then { + assert process.success + assert path(process.out[0][0]).readLines().contains('#CHROM POS ID REF ALT QUAL FILTER INFO FORMAT reads_father reads_mother reads_son') + assert path(process.out[0][0]).readLines().contains('20_10037292_10066351 3480 . C CT 1625.89 . AC=5;AF=0.833;AN=6;BaseQRankSum=0.220;DP=85;ExcessHet=0.0000;FS=2.476;MLEAC=5;MLEAF=0.833;MQ=60.00;MQRankSum=0.00;QD=21.68;ReadPosRankSum=-1.147e+00;SOR=0.487 GT:AD:DP:GQ:PL 0/1:15,16:31:99:367,0,375 1/1:0,18:18:54:517,54,0 1/1:0,26:26:78:756,78,0') + } + + } + +} diff --git a/nf4-science/genomics/solutions/modules/modules/samtools/index/main.nf b/nf4-science/genomics/solutions/modules/samtools/index/main.nf similarity index 100% rename from nf4-science/genomics/solutions/modules/modules/samtools/index/main.nf rename to nf4-science/genomics/solutions/modules/samtools/index/main.nf diff --git a/nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test b/nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test new file mode 100644 index 000000000..e6ceadb62 --- /dev/null +++ b/nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test @@ -0,0 +1,69 @@ +nextflow_process { + + name "Test Process SAMTOOLS_INDEX" + script "modules/samtools/index/main.nf" + process "SAMTOOLS_INDEX" + + test("Should index reads_son.bam correctly") { + + when { + params { + outdir = "tests/results" + } + process { + """ + // define inputs of the process here. Example: + input[0] = file("${projectDir}/data/bam/reads_son.bam") + """ + } + } + + then { + assert process.success + assert snapshot(process.out).match() + } + + } + + test("Should index reads_mother.bam correctly") { + + when { + params { + outdir = "tests/results" + } + process { + """ + input[0] = file("${projectDir}/data/bam/reads_mother.bam") + """ + } + } + + then { + assert process.success + assert snapshot(process.out).match() + } + + } + + test("Should index reads_father.bam correctly") { + + when { + params { + outdir = "tests/results" + } + process { + """ + input[0] = file("${projectDir}/data/bam/reads_father.bam") + """ + } + } + + then { + assert process.success + assert snapshot(process.out).match() + } + + } + + +} diff --git a/nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test.snap b/nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test.snap new file mode 100644 index 000000000..913e22091 --- /dev/null +++ b/nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test.snap @@ -0,0 +1,53 @@ +{ + "Should index reads_son.bam correctly": { + "content": [ + { + "0": [ + [ + "reads_son.bam:md5,af5956d9388ba017944bef276b71d809", + "reads_son.bam.bai:md5,a2ca7b84998218ee77eff14af8eb8ca2" + ] + ] + } + ], + "meta": { + "nf-test": "0.9.2", + "nextflow": "24.10.0" + }, + "timestamp": "2025-03-03T16:59:54.195992321" + }, + "Should index reads_father.bam correctly": { + "content": [ + { + "0": [ + [ + "reads_father.bam:md5,57f3b977b0eee8278924e38894d02a57", + "reads_father.bam.bai:md5,49cb8454781a279a8b33f47209e76fe5" + ] + ] + } + ], + "meta": { + "nf-test": "0.9.2", + "nextflow": "24.10.0" + }, + "timestamp": "2025-03-03T17:08:49.843522701" + }, + "Should index reads_mother.bam correctly": { + "content": [ + { + "0": [ + [ + "reads_mother.bam:md5,04b918c3707c24d8f3a7e88bb68e2d32", + "reads_mother.bam.bai:md5,1b17cbcc9392e7e787cc83a9081deb31" + ] + ] + } + ], + "meta": { + "nf-test": "0.9.2", + "nextflow": "24.10.0" + }, + "timestamp": "2025-03-03T17:08:39.054495804" + } +} \ No newline at end of file From 0f087d9bfd1b67142ec9659a73ac5496ef78412a Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Wed, 5 Mar 2025 11:15:55 +0000 Subject: [PATCH 14/17] Fix end of files --- .../modules/gatk/haplotypecaller/tests/main.nf.test.snap | 3 ++- .../solutions/modules/samtools/index/tests/main.nf.test.snap | 3 ++- 2 files changed, 4 insertions(+), 2 deletions(-) diff --git a/nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test.snap b/nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test.snap index a23ed7b35..ad6ec81e6 100644 --- a/nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test.snap +++ b/nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test.snap @@ -22,4 +22,5 @@ }, "timestamp": "2025-03-04T09:26:58.537420116" } -} \ No newline at end of file +} + diff --git a/nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test.snap b/nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test.snap index 913e22091..572a14886 100644 --- a/nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test.snap +++ b/nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test.snap @@ -50,4 +50,5 @@ }, "timestamp": "2025-03-03T17:08:39.054495804" } -} \ No newline at end of file +} + From ef4152ad6792dfc701768d8922b0a264128d8292 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Wed, 5 Mar 2025 11:30:18 +0000 Subject: [PATCH 15/17] ec fixes --- .../modules/gatk/haplotypecaller/tests/main.nf.test.snap | 1 - 1 file changed, 1 deletion(-) diff --git a/nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test.snap b/nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test.snap index ad6ec81e6..26cac7d4c 100644 --- a/nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test.snap +++ b/nf4-science/genomics/solutions/modules/gatk/haplotypecaller/tests/main.nf.test.snap @@ -23,4 +23,3 @@ "timestamp": "2025-03-04T09:26:58.537420116" } } - From 49f56fb8acf1c9b5530f5b53e6292119cccdad83 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Wed, 5 Mar 2025 11:31:19 +0000 Subject: [PATCH 16/17] ec fix --- .../solutions/modules/samtools/index/tests/main.nf.test.snap | 1 - 1 file changed, 1 deletion(-) diff --git a/nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test.snap b/nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test.snap index 572a14886..43f0b471d 100644 --- a/nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test.snap +++ b/nf4-science/genomics/solutions/modules/samtools/index/tests/main.nf.test.snap @@ -51,4 +51,3 @@ "timestamp": "2025-03-03T17:08:39.054495804" } } - From 96f874e3bb1bd9425846bc5c8be2518cbbf3c499 Mon Sep 17 00:00:00 2001 From: Jonathan Manning Date: Wed, 5 Mar 2025 13:01:11 +0000 Subject: [PATCH 17/17] Update docs/nf4_science/genomics/04_testing.md --- docs/nf4_science/genomics/04_testing.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/nf4_science/genomics/04_testing.md b/docs/nf4_science/genomics/04_testing.md index 345e6a840..4544cc1e8 100644 --- a/docs/nf4_science/genomics/04_testing.md +++ b/docs/nf4_science/genomics/04_testing.md @@ -701,7 +701,7 @@ Test Process GATK_HAPLOTYPECALLER SUCCESS: Executed 1 tests in 19.382s ``` -### 2.7. Add more test data +### 2.7. Add more tests Add similar tests for the mother and father samples: