Merging main

Signed-off-by: Adam Li <adam2392@gmail.com>

Author: adam2392

.github/workflows/update-lock-files-pr.yml

@@ -0,0 +1,58 @@
+# Workflow to update lock files in a PR, triggered by specific PR comments
+name: Update lock files in PR
+on:
+  issue_comment:
+    types: [created]
+
+permissions:
+  contents: write
+
+jobs:
+  update-lock-files:
+    if: >-
+      github.event.issue.pull_request
+      && startsWith(github.event.comment.body, '@scikit-learn-bot update lock-files')
+    runs-on: ubuntu-latest
+
+    steps:
+      # There is no direct way to get the HEAD information directly from issue_comment
+      # event, so we use the GitHub CLI to get the PR head ref and repository
+      - name: Get pull request HEAD information
+        id: pr-head-info
+        env:
+          GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
+        run: |
+          pr_info=$(gh pr view ${{ github.event.issue.number }} --repo ${{ github.repository }} --json headRefName,headRepository,headRepositoryOwner)
+          pr_head_ref=$(echo "$pr_info" | jq -r '.headRefName')
+          pr_head_repository=$(echo "$pr_info" | jq -r '.headRepositoryOwner.login + "/" + .headRepository.name')
+          echo "pr_head_ref=$pr_head_ref" >> $GITHUB_OUTPUT
+          echo "pr_head_repository=$pr_head_repository" >> $GITHUB_OUTPUT
+
+      - name: Check out the PR branch
+        uses: actions/checkout@v4
+        with:
+          ref: ${{ steps.pr-head-info.outputs.pr_head_ref }}
+          repository: ${{ steps.pr-head-info.outputs.pr_head_repository }}
+
+      # We overwrite all the scripts we are going to use in this workflow with their
+      # versions on main; since this workflow has the write permissions this is to avoid
+      # malicious changes to these scripts in PRs to be executed
+      - name: Download scripts from main
+        run: |
+          curl https://raw.githubusercontent.com/${{ github.repository }}/comment-update-lock/build_tools/shared.sh --retry 5 -o ./build_tools/shared.sh
+          curl https://raw.githubusercontent.com/${{ github.repository }}/comment-update-lock/build_tools/update_environments_and_lock_files.py --retry 5 -o ./build_tools/update_environments_and_lock_files.py
+          curl https://raw.githubusercontent.com/${{ github.repository }}/comment-update-lock/build_tools/on_pr_comment_update_environments_and_lock_files.py --retry 5 -o ./build_tools/on_pr_comment_update_environments_and_lock_files.py
+
+      - name: Update lock files
+        env:
+          COMMENT: ${{ github.event.comment.body }}
+        # We download the lock files update scripts from main, since this workflow is
+        # run from main itself
+        run: |
+          source build_tools/shared.sh
+          source $CONDA/bin/activate
+          conda install -n base conda conda-libmamba-solver -y
+          conda config --set solver libmamba
+          conda install -c conda-forge "$(get_dep conda-lock min)" -y
+
+          python build_tools/on_pr_comment_update_environments_and_lock_files.py

build_tools/azure/debian_atlas_32bit_lock.txt

@@ -4,7 +4,7 @@
 #
 #    pip-compile --output-file=build_tools/azure/debian_atlas_32bit_lock.txt build_tools/azure/debian_atlas_32bit_requirements.txt
 #
-attrs==24.1.0
+attrs==24.2.0
     # via pytest
 coverage==7.6.1
     # via pytest-cov

build_tools/azure/pylatest_conda_forge_mkl_linux-64_conda.lock

@@ -4,7 +4,6 @@
 @EXPLICIT
 https://conda.anaconda.org/conda-forge/osx-64/ca-certificates-2024.7.4-h8857fd0_0.conda#7df874a4b05b2d2b82826190170eaa0f
 https://conda.anaconda.org/conda-forge/osx-64/libbrotlicommon-1.1.0-h0dc2134_1.conda#9e6c31441c9aa24e41ace40d6151aab6
-https://conda.anaconda.org/conda-forge/osx-64/libdeflate-1.20-h49d49c5_0.conda#d46104f6a896a0bc6a1d37b88b2edf5c
 https://conda.anaconda.org/conda-forge/osx-64/libexpat-2.6.2-h73e2aa4_0.conda#3d1d51c8f716d97c864d12f7af329526
 https://conda.anaconda.org/conda-forge/osx-64/libffi-3.4.2-h0d85af4_5.tar.bz2#ccb34fb14960ad8b125962d3d79b31a9
 https://conda.anaconda.org/conda-forge/noarch/libgfortran-devel_osx-64-12.3.0-h0b6f5ec_3.conda#39eeea5454333825d72202fae2d5e0b8
@@ -23,7 +22,8 @@ https://conda.anaconda.org/conda-forge/osx-64/bzip2-1.0.8-hfdf4475_7.conda#7ed43
 https://conda.anaconda.org/conda-forge/osx-64/icu-75.1-h120a0e1_0.conda#d68d48a3060eb5abdc1cdc8e2a3a5966
 https://conda.anaconda.org/conda-forge/osx-64/libbrotlidec-1.1.0-h0dc2134_1.conda#9ee0bab91b2ca579e10353738be36063
 https://conda.anaconda.org/conda-forge/osx-64/libbrotlienc-1.1.0-h0dc2134_1.conda#8a421fe09c6187f0eb5e2338a8a8be6d
-https://conda.anaconda.org/conda-forge/osx-64/libcxx-18.1.8-hef8daea_2.conda#c21d8b63b5cf5d3290d5a7aa2b028bcc
+https://conda.anaconda.org/conda-forge/osx-64/libcxx-18.1.8-heced48a_2.conda#8c8198f9e93fcc0fd359ff37b4a8cd2d
+https://conda.anaconda.org/conda-forge/osx-64/libdeflate-1.21-hfdf4475_0.conda#88409b23a5585c15d52de0073f3c9c61
 https://conda.anaconda.org/conda-forge/osx-64/libxcb-1.16-h0dc2134_0.conda#07e80289d4ba724f37b4b6f001f88fbe
 https://conda.anaconda.org/conda-forge/osx-64/libzlib-1.3.1-h87427d6_1.conda#b7575b5aa92108dcc9aaab0f05f2dbce
 https://conda.anaconda.org/conda-forge/osx-64/llvm-openmp-18.1.8-h15ab845_0.conda#2c3c6c8aaf8728f87326964a82fdc7d8
@@ -49,13 +49,13 @@ https://conda.anaconda.org/conda-forge/osx-64/freetype-2.12.1-h60636b9_2.conda#2
 https://conda.anaconda.org/conda-forge/osx-64/libgfortran-5.0.0-13_2_0_h97931a8_3.conda#0b6e23a012ee7a9a5f6b244f5a92c1d5
 https://conda.anaconda.org/conda-forge/osx-64/libhwloc-2.11.1-default_h456cccd_1000.conda#a14989f6bbea46e6ec4521a403f63ff2
 https://conda.anaconda.org/conda-forge/osx-64/libllvm16-16.0.6-hbedff68_3.conda#8fd56c0adc07a37f93bd44aa61a97c90
-https://conda.anaconda.org/conda-forge/osx-64/libtiff-4.6.0-h129831d_3.conda#568593071d2e6cea7b5fc1f75bfa10ca
+https://conda.anaconda.org/conda-forge/osx-64/libtiff-4.6.0-h603087a_4.conda#362626a2aacb976ec89c91b99bfab30b
 https://conda.anaconda.org/conda-forge/osx-64/mpfr-4.2.1-hc80595b_2.conda#fc9b5179824146b67ad5a0b053b253ff
-https://conda.anaconda.org/conda-forge/osx-64/python-3.12.4-h37a9e06_0_cpython.conda#94e2b77992f580ac6b7a4fc9b53018b3
+https://conda.anaconda.org/conda-forge/osx-64/python-3.12.5-h37a9e06_0_cpython.conda#517cb4e16466f8d96ba2a72897d14c48
 https://conda.anaconda.org/conda-forge/noarch/certifi-2024.7.4-pyhd8ed1ab_0.conda#24e7fd6ca65997938fff9e5ab6f653e4
 https://conda.anaconda.org/conda-forge/noarch/colorama-0.4.6-pyhd8ed1ab_0.tar.bz2#3faab06a954c2a04039983f2c4a50d99
 https://conda.anaconda.org/conda-forge/noarch/cycler-0.12.1-pyhd8ed1ab_0.conda#5cd86562580f274031ede6aa6aa24441
-https://conda.anaconda.org/conda-forge/osx-64/cython-3.0.10-py312hede676d_0.conda#3008aa88f0dc67e7144734b16e331ee4
+https://conda.anaconda.org/conda-forge/osx-64/cython-3.0.11-py312h28f332c_0.conda#4ab9ee64007a1e4a79b38e4de31aa2fc
 https://conda.anaconda.org/conda-forge/noarch/exceptiongroup-1.2.2-pyhd8ed1ab_0.conda#d02ae936e42063ca46af6cdad2dbd1e0
 https://conda.anaconda.org/conda-forge/noarch/execnet-2.1.1-pyhd8ed1ab_0.conda#15dda3cdbf330abfe9f555d22f66db46
 https://conda.anaconda.org/conda-forge/noarch/iniconfig-2.0.0-pyhd8ed1ab_0.conda#f800d2da156d08e289b14e87e43c1ae5
@@ -115,15 +115,15 @@ https://conda.anaconda.org/conda-forge/osx-64/contourpy-1.2.1-py312h9230928_0.co
 https://conda.anaconda.org/conda-forge/osx-64/pandas-2.2.2-py312h1171441_1.conda#240737937f1f046b0e03ecc11ac4ec98
 https://conda.anaconda.org/conda-forge/osx-64/scipy-1.14.0-py312hb9702fa_1.conda#9899db3cf8965c3aecab3daf5227d3eb
 https://conda.anaconda.org/conda-forge/osx-64/blas-2.120-mkl.conda#b041a7677a412f3d925d8208936cb1e2
-https://conda.anaconda.org/conda-forge/osx-64/clang_impl_osx-64-16.0.6-h8787910_18.conda#12f8213141de7f6750b237eb933bfe40
+https://conda.anaconda.org/conda-forge/osx-64/clang_impl_osx-64-16.0.6-h8787910_19.conda#64155ef139280e8c181dad866dea2980
 https://conda.anaconda.org/conda-forge/osx-64/matplotlib-base-3.9.1-py312h0d5aeb7_2.conda#0aece95a1cd3b77990022d3e0f37c6aa
 https://conda.anaconda.org/conda-forge/osx-64/pyamg-5.2.1-py312h44e70fa_0.conda#a7c77239f0135d30cbba0164922aa861
-https://conda.anaconda.org/conda-forge/osx-64/clang_osx-64-16.0.6-hb91bd55_18.conda#fd48bd52766dc748842ae785a96d547c
+https://conda.anaconda.org/conda-forge/osx-64/clang_osx-64-16.0.6-hb91bd55_19.conda#760ecbc6f4b6cecbe440b0080626286f
 https://conda.anaconda.org/conda-forge/osx-64/matplotlib-3.9.1-py312hb401068_2.conda#1ead575881ba176014aad8dfac07d1b1
 https://conda.anaconda.org/conda-forge/osx-64/c-compiler-1.7.0-h282daa2_1.conda#d27411cb82bc1b76b9f487da6ae97f1d
-https://conda.anaconda.org/conda-forge/osx-64/clangxx_impl_osx-64-16.0.6-h6d92fbe_18.conda#6caeea3e1c0af451118c19894448d4a0
+https://conda.anaconda.org/conda-forge/osx-64/clangxx_impl_osx-64-16.0.6-h6d92fbe_19.conda#9ffa16e2bd7eb5b8b1a0d19185710cd3
 https://conda.anaconda.org/conda-forge/osx-64/gfortran_osx-64-12.3.0-h18f7dce_1.conda#436af2384c47aedb94af78a128e174f1
-https://conda.anaconda.org/conda-forge/osx-64/clangxx_osx-64-16.0.6-hb91bd55_18.conda#0d120b5e06d2ea6c9103f2017be1ff22
+https://conda.anaconda.org/conda-forge/osx-64/clangxx_osx-64-16.0.6-hb91bd55_19.conda#81d40fad4c14cc7a893f2e274647c7a4
 https://conda.anaconda.org/conda-forge/osx-64/gfortran-12.3.0-h2c809b3_1.conda#c48adbaa8944234b80ef287c37e329b0
 https://conda.anaconda.org/conda-forge/osx-64/cxx-compiler-1.7.0-h7728843_1.conda#e04cb15a20553b973dd068c2dc81d682
 https://conda.anaconda.org/conda-forge/osx-64/fortran-compiler-1.7.0-h6c2ab21_1.conda#48319058089f492d5059e04494b81ed9

build_tools/azure/pylatest_conda_forge_mkl_osx-64_conda.lock

@@ -5,7 +5,7 @@
 https://repo.anaconda.com/pkgs/main/osx-64/blas-1.0-mkl.conda#cb2c87e85ac8e0ceae776d26d4214c8a
 https://repo.anaconda.com/pkgs/main/osx-64/bzip2-1.0.8-h6c40b1e_6.conda#96224786021d0765ce05818fa3c59bdb
 https://repo.anaconda.com/pkgs/main/osx-64/ca-certificates-2024.7.2-hecd8cb5_0.conda#297cfad0c0eac53e5ac75674828eedd9
-https://repo.anaconda.com/pkgs/main/osx-64/jpeg-9e-h46256e1_2.conda#5f0bfd93528771ebc3e340ac1c91a4cd
+https://repo.anaconda.com/pkgs/main/osx-64/jpeg-9e-h46256e1_3.conda#b1d9769eac428e11f5f922531a1da2e0
 https://repo.anaconda.com/pkgs/main/osx-64/libbrotlicommon-1.0.9-h6c40b1e_8.conda#8e86dfa34b08bc664b19e1499e5465b8
 https://repo.anaconda.com/pkgs/main/osx-64/libcxx-14.0.6-h9765a3e_0.conda#387757bb354ae9042370452cd0fb5627
 https://repo.anaconda.com/pkgs/main/osx-64/libdeflate-1.17-hb664fd8_1.conda#b6116b8db33ea6a5b5287dae70d4a913
@@ -48,13 +48,13 @@ https://repo.anaconda.com/pkgs/main/osx-64/kiwisolver-1.4.4-py312hcec6c5f_0.cond
 https://repo.anaconda.com/pkgs/main/osx-64/lcms2-2.12-hf1fd2bf_0.conda#697aba7a3308226df7a93ccfeae16ffa
 https://repo.anaconda.com/pkgs/main/osx-64/mkl-service-2.4.0-py312h6c40b1e_1.conda#b1ef860be9043b35c5e8d9388b858514
 https://repo.anaconda.com/pkgs/main/osx-64/ninja-1.10.2-hecd8cb5_5.conda#a0043b325fb08db82477ae433668e684
-https://repo.anaconda.com/pkgs/main/osx-64/openjpeg-2.4.0-h7231236_2.conda#e7cd7f1cdc309f7e32cedd73803536e0
+https://repo.anaconda.com/pkgs/main/osx-64/openjpeg-2.5.2-hbf2204d_0.conda#8463f11309271a93d615450382761470
 https://repo.anaconda.com/pkgs/main/osx-64/packaging-24.1-py312hecd8cb5_0.conda#6130dafc4d26d55e93ceab460d2a72b5
 https://repo.anaconda.com/pkgs/main/osx-64/pluggy-1.0.0-py312hecd8cb5_1.conda#647fada22f1697691fdee90b52c99bcb
 https://repo.anaconda.com/pkgs/main/osx-64/pyparsing-3.0.9-py312hecd8cb5_0.conda#d85cf2b81c6d9326a57a6418e14db258
 https://repo.anaconda.com/pkgs/main/noarch/python-tzdata-2023.3-pyhd3eb1b0_0.conda#479c037de0186d114b9911158427624e
 https://repo.anaconda.com/pkgs/main/osx-64/pytz-2024.1-py312hecd8cb5_0.conda#2b28ec0e0d07f5c0c701f75200b1e8b6
-https://repo.anaconda.com/pkgs/main/osx-64/setuptools-69.5.1-py312hecd8cb5_0.conda#5c7c7ef1e0762e3ca1f543d28310946f
+https://repo.anaconda.com/pkgs/main/osx-64/setuptools-72.1.0-py312hecd8cb5_0.conda#dff219f3528a6e8ad235c48a29cd6dbe
 https://repo.anaconda.com/pkgs/main/noarch/six-1.16.0-pyhd3eb1b0_1.conda#34586824d411d36af2fa40e799c172d0
 https://repo.anaconda.com/pkgs/main/noarch/toml-0.10.2-pyhd3eb1b0_0.conda#cda05f5f6d8509529d1a2743288d197a
 https://repo.anaconda.com/pkgs/main/osx-64/tornado-6.4.1-py312h46256e1_0.conda#ff2efd781e1b1af38284aeda9d676d42
@@ -79,7 +79,7 @@ https://repo.anaconda.com/pkgs/main/osx-64/numexpr-2.8.7-py312hac873b0_0.conda#6
 https://repo.anaconda.com/pkgs/main/osx-64/scipy-1.11.4-py312h81688c2_0.conda#7d57b4c21a9261f97fa511e0940c5d93
 https://repo.anaconda.com/pkgs/main/osx-64/pandas-2.2.2-py312h77d3abe_0.conda#463868c40d8ff98bec263f1fd57a8d97
 https://repo.anaconda.com/pkgs/main/osx-64/pyamg-4.2.3-py312h44cbcf4_0.conda#3bdc7be74087b3a5a83c520a74e1e8eb
-# pip cython @ https://files.pythonhosted.org/packages/d5/6d/06c08d75adb98cdf72af18801e193d22580cc86ca553610f430f18ea26b3/Cython-3.0.10-cp312-cp312-macosx_10_9_x86_64.whl#sha256=8f2864ab5fcd27a346f0b50f901ebeb8f60b25a60a575ccfd982e7f3e9674914
+# pip cython @ https://files.pythonhosted.org/packages/58/50/fbb23239efe2183e4eaf76689270d6f5b3bbcf9be9ad1eb97cc34349e6fc/Cython-3.0.11-cp312-cp312-macosx_10_9_x86_64.whl#sha256=11996c40c32abf843ba652a6d53cb15944c88d91f91fc4e6f0028f5df8a8f8a1
 # pip meson @ https://files.pythonhosted.org/packages/1d/8d/b83d525907c00c5e22a9cae832bbd958310518ae6ad1dc7e01b69abbb117/meson-1.4.2.tar.gz#sha256=ea2546a26f4a171a741c1fd036f22c9c804d6198e3259f1df588e01f842dd69f
 # pip threadpoolctl @ https://files.pythonhosted.org/packages/4b/2c/ffbf7a134b9ab11a67b0cf0726453cedd9c5043a4fe7a35d1cefa9a1bcfb/threadpoolctl-3.5.0-py3-none-any.whl#sha256=56c1e26c150397e58c4926da8eeee87533b1e32bef131bd4bf6a2f45f3185467
 # pip pyproject-metadata @ https://files.pythonhosted.org/packages/aa/5f/bb5970d3d04173b46c9037109f7f05fc8904ff5be073ee49bb6ff00301bc/pyproject_metadata-0.8.0-py3-none-any.whl#sha256=ad858d448e1d3a1fb408ac5bac9ea7743e7a8bbb472f2693aaa334d2db42f526