Skip to content

Make NeuronTrace coordinate units more clear #358

@tathey1

Description

@tathey1

Neuron trace coordinates typically come in one of two coordinate systems: physical (e.g. microns) or voxel (e.g. coordinates relative to corner of image, in units of voxels). Cloudvolume handles this by giving skeleton objects an attribute called space which is either physical or voxel. This is a good model.

Our NeuronTrace object is a little messy when dealing with these coordinate systems. For example, the dataframe may be either physical or voxel coordinates, depending on if some seemingly unrelated argument rounding is True or false (see here). Let's make this more clear

Metadata

Metadata

Assignees

No one assigned

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions