Skip to content

Commit 4a22a46

Browse files
uckogouriano
authored andcommitted
accguide*: Account for the latest TPE nucleotides, both regular and WGS.
Disregard CAI942xxxx TPE accessions' disapparance from search results (which turned out to stem from suppression rather than reclassification) but go ahead and bump accguide2.*'s high-water mark comment. (accguide.txt's is stalled along with the remainder of that portion of the file, which would otherwise grow completely out of hand.) JIRA: CXX-14017. git-svn-id: https://anonsvn.ncbi.nlm.nih.gov/repos/v1/trunk/c++@104449 78c7ea69-d796-4a43-9a09-de51944f1b03
1 parent 33be32a commit 4a22a46

File tree

3 files changed

+30
-6
lines changed

3 files changed

+30
-6
lines changed

src/objects/seqloc/accguide.txt

Lines changed: 8 additions & 0 deletions
Original file line numberDiff line numberDiff line change
@@ -3810,6 +3810,7 @@ special LT556286-LT558089 embl_est
38103810
special LT571433-LT571435 embl_tpa_nuc
38113811
special LT605004 embl_tpa_nuc
38123812
special LT631550-LT631670 embl_tpa_nuc
3813+
special LT800692-LT800945 embl_tpa_nuc
38133814
special LT906301-LT906358 embl_tpa_nuc
38143815
special LT962964-LT963174 embl_tpa_nuc
38153816
special LT990249-LT990597 embl_tpa_nuc
@@ -6577,6 +6578,13 @@ special CAZXEC000000000-CAZXJK999999999 embl_tpa_wgs_nuc # 6+9
65776578
special CAZXJM000000000-CAZYKD999999999 embl_tpa_wgs_nuc # 6+9
65786579
special CAZYKH000000000-CAZZNZ999999999 embl_tpa_wgs_nuc # 6+9
65796580
special CAZZPA000000000-CAZZQA999999999 embl_tpa_wgs_nuc # 6+9
6581+
special CBCSLO000000000-CBCTZZ999999999 embl_tpa_wgs_nuc # 6+9
6582+
special CBDDBE000000000-CBDDBE999999999 embl_tpa_wgs_nuc # 6+9
6583+
special CBDEIC000000000-CBDEKD999999999 embl_tpa_wgs_nuc # 6+9
6584+
special CBDELQ000000000-CBDESL999999999 embl_tpa_wgs_nuc # 6+9
6585+
special CBDEWI000000000-CBDEYI999999999 embl_tpa_wgs_nuc # 6+9
6586+
special CBDEYL000000000-CBDFEN999999999 embl_tpa_wgs_nuc # 6+9
6587+
special CBDFEP000000000-CBDFEW999999999 embl_tpa_wgs_nuc # 6+9
65806588

65816589
# Some "EMBL" 8- and 10-character protein accessions are really third-party
65826590
# annotations.

src/objects/seqloc/accguide2.inc

Lines changed: 12 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -30,9 +30,9 @@
3030
*
3131
*/
3232

33-
/* time_t value corresponding to Thu Apr 24 13:34:09 EDT 2025; formally
33+
/* time_t value corresponding to Thu Apr 24 14:06:04 EDT 2025; formally
3434
* expressed as unsigned long so output can stand fully on its own. */
35-
static const unsigned long kBuiltInGuide_Timestamp = 1745516049UL;
35+
static const unsigned long kBuiltInGuide_Timestamp = 1745517964UL;
3636
static const char* const kBuiltInGuide[] = {
3737
"# $Id$",
3838
"version 2 # of file format",
@@ -2080,7 +2080,7 @@ static const char* const kBuiltInGuide[] = {
20802080
"special2 LT+6 embl_est",
20812081
": 159851-65 556286-8089",
20822082
"special2 LT+6 embl_tpa_nuc",
2083-
": 548096-244 71433-5 605004 31550-670 906301-58 62964-3174 90249-597",
2083+
": 548096-244 71433-5 605004 31550-670 800692-945 906301-58 62964-3174 90249-597",
20842084
"",
20852085
"# Nominally (conservatively) embl_other_nuc.",
20862086
"special OB000001-OB660024 embl_con",
@@ -5170,6 +5170,14 @@ static const char* const kBuiltInGuide[] = {
51705170
"special CAZXJM000000000-CAZYKD999999999 embl_tpa_wgs_nuc # 6+9",
51715171
"special CAZYKH000000000-CAZZNZ999999999 embl_tpa_wgs_nuc # 6+9",
51725172
"special CAZZPA000000000-CAZZQA999999999 embl_tpa_wgs_nuc # 6+9",
5173+
"special CBCSLO000000000-CBCTZZ999999999 embl_tpa_wgs_nuc # 6+9",
5174+
"special2 CBDDBE+9 embl_tpa_wgs_nuc",
5175+
": 000000000-999999999",
5176+
"special CBDEIC000000000-CBDEKD999999999 embl_tpa_wgs_nuc # 6+9",
5177+
"special CBDELQ000000000-CBDESL999999999 embl_tpa_wgs_nuc # 6+9",
5178+
"special CBDEWI000000000-CBDEYI999999999 embl_tpa_wgs_nuc # 6+9",
5179+
"special CBDEYL000000000-CBDFEN999999999 embl_tpa_wgs_nuc # 6+9",
5180+
"special CBDFEP000000000-CBDFEW999999999 embl_tpa_wgs_nuc # 6+9",
51735181
"",
51745182
"# Some \"EMBL\" TPA nucleotide accessions are really third-party annotations.",
51755183
"special2 HBHG+8 embl_tpa_tsa_nuc",
@@ -25767,5 +25775,5 @@ static const char* const kBuiltInGuide[] = {
2576725775
": 9426052-774 6-800 2-903 5-87 9-8023 5-66 8-535 7-77",
2576825776
"## Err on the side of caution on as yet unassigned IDs, and hope that",
2576925777
"## there's not *too* much more backfilling.",
25770-
"#special CAI9794946-CZZ9999999 unreserved_prot"
25778+
"#special CAK4035038-CZZ9999999 unreserved_prot"
2577125779
};

src/objects/seqloc/accguide2.txt

Lines changed: 10 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -2044,7 +2044,7 @@ special2 LR+6 embl_tpa_nuc
20442044
special2 LT+6 embl_est
20452045
: 159851-65 556286-8089
20462046
special2 LT+6 embl_tpa_nuc
2047-
: 548096-244 71433-5 605004 31550-670 906301-58 62964-3174 90249-597
2047+
: 548096-244 71433-5 605004 31550-670 800692-945 906301-58 62964-3174 90249-597
20482048

20492049
# Nominally (conservatively) embl_other_nuc.
20502050
special OB000001-OB660024 embl_con
@@ -5134,6 +5134,14 @@ special CAZXEC000000000-CAZXJK999999999 embl_tpa_wgs_nuc # 6+9
51345134
special CAZXJM000000000-CAZYKD999999999 embl_tpa_wgs_nuc # 6+9
51355135
special CAZYKH000000000-CAZZNZ999999999 embl_tpa_wgs_nuc # 6+9
51365136
special CAZZPA000000000-CAZZQA999999999 embl_tpa_wgs_nuc # 6+9
5137+
special CBCSLO000000000-CBCTZZ999999999 embl_tpa_wgs_nuc # 6+9
5138+
special2 CBDDBE+9 embl_tpa_wgs_nuc
5139+
: 000000000-999999999
5140+
special CBDEIC000000000-CBDEKD999999999 embl_tpa_wgs_nuc # 6+9
5141+
special CBDELQ000000000-CBDESL999999999 embl_tpa_wgs_nuc # 6+9
5142+
special CBDEWI000000000-CBDEYI999999999 embl_tpa_wgs_nuc # 6+9
5143+
special CBDEYL000000000-CBDFEN999999999 embl_tpa_wgs_nuc # 6+9
5144+
special CBDFEP000000000-CBDFEW999999999 embl_tpa_wgs_nuc # 6+9
51375145

51385146
# Some "EMBL" TPA nucleotide accessions are really third-party annotations.
51395147
special2 HBHG+8 embl_tpa_tsa_nuc
@@ -25731,4 +25739,4 @@ special2 CAI+7 embl_tpa_wgs_prot
2573125739
: 9426052-774 6-800 2-903 5-87 9-8023 5-66 8-535 7-77
2573225740
## Err on the side of caution on as yet unassigned IDs, and hope that
2573325741
## there's not *too* much more backfilling.
25734-
#special CAI9794946-CZZ9999999 unreserved_prot
25742+
#special CAK4035038-CZZ9999999 unreserved_prot

0 commit comments

Comments
 (0)