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[GL_RefAnnotTable] Typo fixes
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GeneLab_Reference_Annotations/Pipeline_GL-DPPD-7110_Versions/GL-DPPD-7110-A/GL-DPPD-7110-A.md

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@@ -301,7 +301,7 @@ if ( file.exists(out_table_filename) ) {
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BiocManager::install(target_org_db, ask = FALSE)
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if (!requireNamespace(target_org_db, quietly = TRUE)) {
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tryCatch({
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# Define genus and species regardless of target_org_db
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# Parse organism's name in the reference table to create the org.db name (target_org_db)
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genus_species <- strsplit(target_organism, " ")[[1]]
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if (length(genus_species) < 1) {
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stop("Species designation is not correctly formatted: ", target_organism)

GeneLab_Reference_Annotations/Workflow_Documentation/GL_RefAnnotTable-A/workflow_code/install-org-db.R

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@@ -8,7 +8,7 @@ install_annotations <- function(target_organism, refTablePath) {
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filter(species == target_organism) %>%
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pull(taxon)
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# Define genus and species regardless of target_org_db
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# Parse organism's name in the reference table to create the org.db name (target_org_db)
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target_species_designation <- ref_table %>%
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filter(species == target_organism) %>%
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pull(species) %>%

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