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Merge pull request #138 from torres-alexis/DEV_RNAseq_vG_CURRENT
Add updated RNAseq (eukaryotic pipeline): GL-DPPD-7101-G.md and new RNAseq prokaryotic pipeline
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RNAseq/Pipeline_GL-DPPD-7101_Versions/GL-DPPD-7101-G.md

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RNAseq/README.md

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# GeneLab bioinformatics processing pipeline for Illumina RNA-sequencing data
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> **The document [`GL-DPPD-7101-F.md`](Pipeline_GL-DPPD-7101_Versions/GL-DPPD-7101-F.md) holds an overview and example commands for how GeneLab processes RNAseq datasets. See the [Repository Links](#repository-links) descriptions below for more information. Processed data output files and a GeneLab data processing summary is provided for each GLDS dataset in the [Open Science Data Repository (OSDR)](https://osdr.nasa.gov/bio/repo/).**
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> **The document [`GL-DPPD-7101-G.md`](Pipeline_GL-DPPD-7101_Versions/GL-DPPD-7101-G.md) holds an overview and example commands for how GeneLab processes RNAseq datasets. See the [Repository Links](#repository-links) descriptions below for more information. Processed data output files and a GeneLab data processing summary is provided for each GLDS dataset in the [Open Science Data Repository (OSDR)](https://osdr.nasa.gov/bio/repo/).**
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---
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RNAseq:
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<img src="images/RNAseq_eukaryotes_pipeline_diagram.png" align="center" alt=""/>
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<img src="images/RNAseq_pipeline_diagram.png" align="center" alt=""/>
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RNAseq (Prokaryotes):
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<img src="images/RNAseq_prokaryotes_pipeline_diagram.png" align="center" alt=""/>
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## Repository Links
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- Contains the current and previous GeneLab RNAseq consensus processing pipeline (RCP) versions documentation
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* [**Pipeline_GL-DPPD-7115_Versions**](Pipeline_GL-DPPD-7115_Versions)
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- Contains the current and previous GeneLab RNAseq (Prokaryotes) consensus processing pipeline (RCP) versions documentation
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* [**RNAseq_Tool_Install**](RNAseq_Tool_Install)
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- Contains instructions and associated yaml files to install the conda environments containing tools used to process RNAseq datasets using the GeneLab RCP, versions A-E
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## Notices
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Copyright © 2023 United States Government as represented by the Administrator of the National Aeronautics and Space Administration. All Rights Reserved.
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Copyright © 2025 United States Government as represented by the Administrator of the National Aeronautics and Space Administration. All Rights Reserved.
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### Disclaimers
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<br>
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---
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**Developed and maintained by:**
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Amanda Saravia-Butler
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Jonathan Oribello
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**Developed by:**
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Amanda Saravia-Butler
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Jonathan Oribello
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**Maintained by:**
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Alexis Torres
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Crystal Han

RNAseq/Workflow_Documentation/NF_RCP-F/workflow_code/assets/README.md

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