SW_AmpIllumina-B: Typo fix

 - Make visualizations/README.md parameters casing consistent

Author: torres-alexis

Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B/workflow_code/visualizations/README.md

@@ -71,11 +71,11 @@ ___
 ### 3. Parameter definitions 
 
 **Parameter Definitions for Illumina-R-visualizations.R:**
-* `runsheet_file` – Specifies the runsheet containing sample metadata required for processing (output from [GL-DPPD-7104-B step 6a](/Amplicon/Illumina/Pipeline_GL-DPPD-7104_Versions/GL-DPPD-7104-B.md#6a-create-sample-runsheet))
-* `sample_info` – Specifies the text file containing the IDs of each sample used, required for running the SW_AmpIllumina workflow (output from [run_workflow.py](/Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B/README.md#5-additional-output-files))
-* `counts` – Specifies the ASV counts table (output from [GL-DPPD-7104-B step 5g](/Amplicon/Illumina/Pipeline_GL-DPPD-7104_Versions/GL-DPPD-7104-B.md#5g-generating-and-writing-standard-outputs))
-* `taxonomy` – Specifies the taxonomy table (output from [GL-DPPD-7104-B step 5g](/Amplicon/Illumina/Pipeline_GL-DPPD-7104_Versions/GL-DPPD-7104-B.md#5g-generating-and-writing-standard-outputs))
-* `final_outputs_dir` – Specifies the path where output files will be saved.
-* `assay_suffix` – Specifies a string that is prepended to the start of the output file names. Default: ""
-* `output_prefix` – Specifies a string that is appended to the end of the output file names Default: "_GLAmpSeq"
-* `RColorBrewer_Palette` – Specifies the RColorBrewer palette that will be used for coloring in the plots. Options include "Set1", "Accent", "Dark2", "Paired", "Pastel1", "Pastel2", "Set2", and "Set3". Default: "Set1"
+* `runsheet_file` – specifies the runsheet containing sample metadata required for processing (output from [GL-DPPD-7104-B step 6a](/Amplicon/Illumina/Pipeline_GL-DPPD-7104_Versions/GL-DPPD-7104-B.md#6a-create-sample-runsheet))
+* `sample_info` – specifies the text file containing the IDs of each sample used, required for running the SW_AmpIllumina workflow (output from [run_workflow.py](/Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B/README.md#5-additional-output-files))
+* `counts` – specifies the ASV counts table (output from [GL-DPPD-7104-B step 5g](/Amplicon/Illumina/Pipeline_GL-DPPD-7104_Versions/GL-DPPD-7104-B.md#5g-generating-and-writing-standard-outputs))
+* `taxonomy` – specifies the taxonomy table (output from [GL-DPPD-7104-B step 5g](/Amplicon/Illumina/Pipeline_GL-DPPD-7104_Versions/GL-DPPD-7104-B.md#5g-generating-and-writing-standard-outputs))
+* `final_outputs_dir` – specifies the path where output files will be saved
+* `assay_suffix` – specifies a string that is prepended to the start of the output file names. Default: ""
+* `output_prefix` – specifies a string that is appended to the end of the output file names. Default: "_GLAmpSeq"
+* `RColorBrewer_Palette` – specifies the RColorBrewer palette that will be used for coloring in the plots. Options include "Set1", "Accent", "Dark2", "Paired", "Pastel1", "Pastel2", "Set2", and "Set3". Default: "Set1"