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[GL_RefAnnotTable] Add go.db info
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GeneLab_Reference_Annotations/Pipeline_GL-DPPD-7110_Versions/GL-DPPD-7110-A/GL-DPPD-7110-A.md

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@@ -157,19 +157,22 @@ The default columns in the annotation table are:
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# Annotation table build overview with example commands
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> Current GeneLab annotation tables are available on [figshare](https://figshare.com/), exact links for each reference organism are provided in the [GL-DPPD-7110-A_annotations.csv](GL-DPPD-7110-A_annotations.csv) file.
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> **[Ensembl Reference Versions](https://www.ensembl.org/index.html):**
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> - Animals: Ensembl release 112
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> - Plants: Ensembl plants release 59
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> - Bacteria: Ensembl bacteria release 59
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>
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> **Database Versions:**
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> - STRINGdb: 12.0
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> - PANTHERdb: 18.0
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> - GO.db: 2.1 (used only when creating a local org.db R package)
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> > *Note: The values in the 'name' column of [GL-DPPD-7110-A_annotations.csv](GL-DPPD-7110-A_annotations.csv) (e.g., HUMAN, MOUSE, RAT) are derived from the short names used in PANTHER. These short names are subject to change.*
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Current GeneLab annotation tables are available on [figshare](https://figshare.com/), exact links for each reference organism are provided in the [GL-DPPD-7110-A_annotations.csv](GL-DPPD-7110-A_annotations.csv) file.
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**[Ensembl Reference Versions](https://www.ensembl.org/index.html):**
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- Animals: Ensembl release 112
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- Plants: Ensembl plants release 59
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- Bacteria: Ensembl bacteria release 59
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**Database Versions:**
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- STRINGdb: 12.0
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- PANTHERdb: 18.0
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- GO.db:
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- GO ontology file updated on 2024-01-17
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- Entrez gene data updated on 2024-03-12
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- DB schema version 2.1
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> *Note: The values in the 'name' column of [GL-DPPD-7110-A_annotations.csv](GL-DPPD-7110-A_annotations.csv) (e.g., HUMAN, MOUSE, RAT) are derived from the short names used in PANTHER. These short names are subject to change.*
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