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21 | 21 |
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22 | 22 | The software for the Microarray pipelines and workflows program as a whole are distributed under the [GNU General Public License version 3.0](../Licenses/Microarray_GPL-3.0_with_Additional_Requirements_License.pdf) and calls other open source software components. The following is a list of these components:
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23 | 23 |
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24 |
| -• R, "GNU GENERAL PUBLIC LICENSE Version 2, June 1991, and Version 3, 29 June 2007", https://www.r-project.org/Licenses/ |
25 |
| -• DT, "GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007", https://github.com/rstudio/DT/blob/main/LICENSE |
26 |
| -• dplyr, MIT License Copyright (c) 2022 dplyr authors, https://github.com/tidyverse/dplyr/blob/main/LICENSE.md |
27 |
| -• stringr, MIT License Copyright (c) 2020 stringr authors, https://github.com/tidyverse/stringr/blob/main/LICENSE.md |
28 |
| -• R.utils, "GNU LESSER GENERAL PUBLIC LICENSE Version 2.1, February 1999", https://github.com/HenrikBengtsson/R.utils/blob/2.12.2/DESCRIPTION |
29 |
| -• oligo, "GNU LESSER GENERAL PUBLIC LICENSE Version 2.1, February 1999", https://www.bioconductor.org/packages/3.14/bioc/html/oligo.html |
30 |
| -• limma, "GNU GENERAL PUBLIC LICENSE Version 2, June 1991", https://bioconductor.org/packages/3.14/bioc/html/limma.html |
31 |
| -• glue, MIT License Copyright (c) 2021 glue authors, https://github.com/tidyverse/glue/blob/v1.6.2/LICENSE.md |
32 |
| -• biomaRt, The Artistic License 2.0, https://bioconductor.org/packages/3.14/bioc/manuals/biomaRt/man/biomaRt.pdf |
33 |
| -• matrixStats, The Artistic License 2.0, https://github.com/HenrikBengtsson/matrixStats/blob/develop/DESCRIPTION |
34 |
| -• statmod, "GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007", https://github.com/cran/statmod/blob/1.5.0/DESCRIPTION |
35 |
| -• Singularity, "The BSD 3-clause License (MIT) Copyright (c) 2015-2017, Gregory M. Kurtzer. Copyright (c) 2016-2017, The Regents of the University of California. Copyright (c) 2017, SingularityWare, LLC. Copyright (c) 2018-2022, Sylabs, Inc.", https://docs.sylabs.io/guides/3.9/user-guide/license.html |
36 |
| -• dp_tools, The MIT License (MIT) Copyright (c) 2022 Jonathan Oribello, https://github.com/J-81/dp_tools/blob/main/LICENSE |
37 |
| -• Quarto, "GNU GENERAL PUBLIC LICENSE Version 2, June 1991", https://quarto.org/license.html |
38 |
| -• tibble, MIT License Copyright (c) 2019 RStudio and others, https://tibble.tidyverse.org/LICENSE.html |
39 |
| -• Nextflow, "Apache License Version 2.0, January 2004", https://github.com/nextflow-io/nextflow/blob/master/COPYING |
40 |
| -• python, The PSF LICENSE AGREEMENT Copyright (c) 2001-2022 Python Software Foundation, https://docs.python.org/3/license.html#psf-license-agreement-for-python-release |
41 |
| -• pandas, The BSD 3-clause License, https://github.com/pandas-dev/pandas/blob/main/LICENSE |
42 |
| -• ggplot2, MIT License Copyright (c) 2020 ggplot2 authors, https://ggplot2.tidyverse.org/LICENSE.html |
| 24 | +* R, "GNU GENERAL PUBLIC LICENSE Version 2, June 1991, and Version 3, 29 June 2007", https://www.r-project.org/Licenses/ |
| 25 | +* DT, "GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007", https://github.com/rstudio/DT/blob/main/LICENSE |
| 26 | +* dplyr, MIT License Copyright (c) 2022 dplyr authors, https://github.com/tidyverse/dplyr/blob/main/LICENSE.md |
| 27 | +* stringr, MIT License Copyright (c) 2020 stringr authors, https://github.com/tidyverse/stringr/blob/main/LICENSE.md |
| 28 | +* R.utils, "GNU LESSER GENERAL PUBLIC LICENSE Version 2.1, February 1999", https://github.com/HenrikBengtsson/R.utils/blob/2.12.2/DESCRIPTION |
| 29 | +* oligo, "GNU LESSER GENERAL PUBLIC LICENSE Version 2.1, February 1999", https://www.bioconductor.org/packages/3.14/bioc/html/oligo.html |
| 30 | +* limma, "GNU GENERAL PUBLIC LICENSE Version 2, June 1991", https://bioconductor.org/packages/3.14/bioc/html/limma.html |
| 31 | +* glue, MIT License Copyright (c) 2021 glue authors, https://github.com/tidyverse/glue/blob/v1.6.2/LICENSE.md |
| 32 | +* biomaRt, The Artistic License 2.0, https://bioconductor.org/packages/3.14/bioc/manuals/biomaRt/man/biomaRt.pdf |
| 33 | +* matrixStats, The Artistic License 2.0, https://github.com/HenrikBengtsson/matrixStats/blob/develop/DESCRIPTION |
| 34 | +* statmod, "GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007", https://github.com/cran/statmod/blob/1.5.0/DESCRIPTION |
| 35 | +* Singularity, "The BSD 3-clause License (MIT) Copyright (c) 2015-2017, Gregory M. Kurtzer. Copyright (c) 2016-2017, The Regents of the University of California. Copyright (c) 2017, SingularityWare, LLC. Copyright (c) 2018-2022, Sylabs, Inc.", https://docs.sylabs.io/guides/3.9/user-guide/license.html |
| 36 | +* dp_tools, The MIT License (MIT) Copyright (c) 2022 Jonathan Oribello, https://github.com/J-81/dp_tools/blob/main/LICENSE |
| 37 | +* Quarto, "GNU GENERAL PUBLIC LICENSE Version 2, June 1991", https://quarto.org/license.html |
| 38 | +* tibble, MIT License Copyright (c) 2019 RStudio and others, https://tibble.tidyverse.org/LICENSE.html |
| 39 | +* Nextflow, "Apache License Version 2.0, January 2004", https://github.com/nextflow-io/nextflow/blob/master/COPYING |
| 40 | +* python, The PSF LICENSE AGREEMENT Copyright (c) 2001-2022 Python Software Foundation, https://docs.python.org/3/license.html#psf-license-agreement-for-python-release |
| 41 | +* pandas, The BSD 3-clause License, https://github.com/pandas-dev/pandas/blob/main/LICENSE |
| 42 | +* ggplot2, MIT License Copyright (c) 2020 ggplot2 authors, https://ggplot2.tidyverse.org/LICENSE.html |
43 | 43 |
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44 | 44 |
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45 | 45 | ### 3rd Party Software Licenses
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