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Microarray/README.md

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The software for the Microarray pipelines and workflows program as a whole are distributed under the [GNU General Public License version 3.0](../Licenses/Microarray_GPL-3.0_with_Additional_Requirements_License.pdf) and calls other open source software components. The following is a list of these components:
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R, "GNU GENERAL PUBLIC LICENSE Version 2, June 1991, and Version 3, 29 June 2007", https://www.r-project.org/Licenses/
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DT, "GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007", https://github.com/rstudio/DT/blob/main/LICENSE
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dplyr, MIT License Copyright (c) 2022 dplyr authors, https://github.com/tidyverse/dplyr/blob/main/LICENSE.md
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stringr, MIT License Copyright (c) 2020 stringr authors, https://github.com/tidyverse/stringr/blob/main/LICENSE.md
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R.utils, "GNU LESSER GENERAL PUBLIC LICENSE Version 2.1, February 1999", https://github.com/HenrikBengtsson/R.utils/blob/2.12.2/DESCRIPTION
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oligo, "GNU LESSER GENERAL PUBLIC LICENSE Version 2.1, February 1999", https://www.bioconductor.org/packages/3.14/bioc/html/oligo.html
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limma, "GNU GENERAL PUBLIC LICENSE Version 2, June 1991", https://bioconductor.org/packages/3.14/bioc/html/limma.html
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glue, MIT License Copyright (c) 2021 glue authors, https://github.com/tidyverse/glue/blob/v1.6.2/LICENSE.md
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biomaRt, The Artistic License 2.0, https://bioconductor.org/packages/3.14/bioc/manuals/biomaRt/man/biomaRt.pdf
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matrixStats, The Artistic License 2.0, https://github.com/HenrikBengtsson/matrixStats/blob/develop/DESCRIPTION
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statmod, "GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007", https://github.com/cran/statmod/blob/1.5.0/DESCRIPTION
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Singularity, "The BSD 3-clause License (MIT) Copyright (c) 2015-2017, Gregory M. Kurtzer. Copyright (c) 2016-2017, The Regents of the University of California. Copyright (c) 2017, SingularityWare, LLC. Copyright (c) 2018-2022, Sylabs, Inc.", https://docs.sylabs.io/guides/3.9/user-guide/license.html
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dp_tools, The MIT License (MIT) Copyright (c) 2022 Jonathan Oribello, https://github.com/J-81/dp_tools/blob/main/LICENSE
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Quarto, "GNU GENERAL PUBLIC LICENSE Version 2, June 1991", https://quarto.org/license.html
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tibble, MIT License Copyright (c) 2019 RStudio and others, https://tibble.tidyverse.org/LICENSE.html
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Nextflow, "Apache License Version 2.0, January 2004", https://github.com/nextflow-io/nextflow/blob/master/COPYING
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python, The PSF LICENSE AGREEMENT Copyright (c) 2001-2022 Python Software Foundation, https://docs.python.org/3/license.html#psf-license-agreement-for-python-release
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pandas, The BSD 3-clause License, https://github.com/pandas-dev/pandas/blob/main/LICENSE
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ggplot2, MIT License Copyright (c) 2020 ggplot2 authors, https://ggplot2.tidyverse.org/LICENSE.html
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* R, "GNU GENERAL PUBLIC LICENSE Version 2, June 1991, and Version 3, 29 June 2007", https://www.r-project.org/Licenses/
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* DT, "GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007", https://github.com/rstudio/DT/blob/main/LICENSE
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* dplyr, MIT License Copyright (c) 2022 dplyr authors, https://github.com/tidyverse/dplyr/blob/main/LICENSE.md
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* stringr, MIT License Copyright (c) 2020 stringr authors, https://github.com/tidyverse/stringr/blob/main/LICENSE.md
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* R.utils, "GNU LESSER GENERAL PUBLIC LICENSE Version 2.1, February 1999", https://github.com/HenrikBengtsson/R.utils/blob/2.12.2/DESCRIPTION
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* oligo, "GNU LESSER GENERAL PUBLIC LICENSE Version 2.1, February 1999", https://www.bioconductor.org/packages/3.14/bioc/html/oligo.html
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* limma, "GNU GENERAL PUBLIC LICENSE Version 2, June 1991", https://bioconductor.org/packages/3.14/bioc/html/limma.html
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* glue, MIT License Copyright (c) 2021 glue authors, https://github.com/tidyverse/glue/blob/v1.6.2/LICENSE.md
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* biomaRt, The Artistic License 2.0, https://bioconductor.org/packages/3.14/bioc/manuals/biomaRt/man/biomaRt.pdf
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* matrixStats, The Artistic License 2.0, https://github.com/HenrikBengtsson/matrixStats/blob/develop/DESCRIPTION
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* statmod, "GNU GENERAL PUBLIC LICENSE Version 3, 29 June 2007", https://github.com/cran/statmod/blob/1.5.0/DESCRIPTION
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* Singularity, "The BSD 3-clause License (MIT) Copyright (c) 2015-2017, Gregory M. Kurtzer. Copyright (c) 2016-2017, The Regents of the University of California. Copyright (c) 2017, SingularityWare, LLC. Copyright (c) 2018-2022, Sylabs, Inc.", https://docs.sylabs.io/guides/3.9/user-guide/license.html
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* dp_tools, The MIT License (MIT) Copyright (c) 2022 Jonathan Oribello, https://github.com/J-81/dp_tools/blob/main/LICENSE
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* Quarto, "GNU GENERAL PUBLIC LICENSE Version 2, June 1991", https://quarto.org/license.html
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* tibble, MIT License Copyright (c) 2019 RStudio and others, https://tibble.tidyverse.org/LICENSE.html
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* Nextflow, "Apache License Version 2.0, January 2004", https://github.com/nextflow-io/nextflow/blob/master/COPYING
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* python, The PSF LICENSE AGREEMENT Copyright (c) 2001-2022 Python Software Foundation, https://docs.python.org/3/license.html#psf-license-agreement-for-python-release
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* pandas, The BSD 3-clause License, https://github.com/pandas-dev/pandas/blob/main/LICENSE
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* ggplot2, MIT License Copyright (c) 2020 ggplot2 authors, https://ggplot2.tidyverse.org/LICENSE.html
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### 3rd Party Software Licenses

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