add assay suffix to md5sum module

Author: torres-alexis

RNAseq/Workflow_Documentation/NF_RCP/workflow_code/modules/md5sum.nf

@@ -15,15 +15,15 @@ process MD5SUM {
         val(md5sum_label)
 
     output:
-        path("${ md5sum_label }_md5sum_GLbulkRNAseq.tsv"), emit: md5sums
+        path("${ md5sum_label }md5sum${params.assay_suffix}.tsv"), emit: md5sums
 
     script:
         """
         # Generate raw md5sums
         if [ -d "${ files }" ]; then
-            find "${ files }" -type f -exec md5sum {} \\; > ${ md5sum_label }_md5sum_GLbulkRNAseq.tsv
+            find "${ files }" -type f -exec md5sum {} \\; > ${ md5sum_label }md5sum${ params.assay_suffix }.tsv
         else
-            md5sum ${ files } > ${ md5sum_label }_md5sum_GLbulkRNAseq.tsv
+            md5sum ${ files } > ${ md5sum_label }md5sum${ params.assay_suffix }.tsv
         fi
 
         """

RNAseq/Workflow_Documentation/NF_RCP/workflow_code/workflows/rnaseq_microbes.nf

@@ -312,12 +312,12 @@ workflow RNASEQ_MICROBES {
             STAGE_RAW_READS.out.ch_all_raw_reads
             | concat (RAW_READS_MULTIQC.out.zipped_report)
             | collect,
-            "raw"
+            "raw_"
         )
 
         // PROCESSED_MD5SUM(
         //     TRIMMED_READS_MULTIQC.out.zipped_report,
-        //     "processed"
+        //     "processed_"
         // )
 
         // Run Qualimap BAM QC and rnaseq