Added help variable

Author: olabiyi

Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B/workflow_code/main.nf

@@ -7,6 +7,9 @@ c_bright_green = "\u001b[32;1m";
 c_blue = "\033[0;34m";
 c_reset = "\033[0m";
 
+params.help = false
+params.debug = false
+
 /**************************************************
 * HELP MENU  **************************************
 **************************************************/
@@ -92,6 +95,11 @@ if (params.help) {
   }
 
 
+
+/************************************************
+*********** Show pipeline parameters ************
+*************************************************/
+
 if(params.debug){
 log.info """
          Nextflow AmpIllumina Consensus Pipeline: $workflow.manifest.version