update deseq2 image, nextflow version

Author: torres-alexis

RNAseq/Workflow_Documentation/NF_RCP/workflow_code/conf/by_docker_image.config

@@ -21,7 +21,7 @@ process {
 
     withName: 'QUANTIFY_STAR_GENES|QUANTIFY_RSEM_GENES|DGE_DESEQ2|ADD_GENE_ANNOTATIONS|EXTEND_DGE_TABLE' {
         // This image includes a collection of R libraries that support all R scripts in the workflow
-        container = "quay.io/torres-alexis/gl_images:DESeq2_1.0.9" 
+        container = "quay.io/nasa_genelab/gl-rnaseq:1.0.0" 
     }
 
      withName: 'FASTQC' {

RNAseq/Workflow_Documentation/NF_RCP/workflow_code/nextflow.config

@@ -146,6 +146,6 @@ manifest {
     homePage        = 'https://github.com/nasa/GeneLab_Data_Processing/tree/master/RNAseq'
     description     = 'RNA-Seq Pipeline for Documents GL-DPPD-7101-G and GL-DPPD-7115.'
     mainScript      = 'main.nf'
-    nextflowVersion = '!>=24.04.4'
+    nextflowVersion = '!>=24.10.4'
     version         = '2.0.0'
 }

RNAseq/Workflow_Documentation/README.md

@@ -8,8 +8,8 @@ GeneLab has wrapped each step of the pipeline into a workflow with validation an
 
 |Pipeline Version|Current Workflow Version (for respective pipeline version)|Nextflow Version|
 |:---------------|:---------------------------------------------------------|:---------------|
-|*[GL-DPPD-7101-G.md](../Pipeline_GL-DPPD-7101_Versions/GL-DPPD-7101-G.md)|[NF_RCP-G_2.0.0](NF_RCP)|24.10.3|
-|*[GL-DPPD-7115.md](../Pipeline_GL-DPPD-7115_Versions/GL-DPPD-7115.md)|[NF_RCP-G_2.0.0](NF_RCP)|24.10.3|
+|*[GL-DPPD-7101-G.md](../Pipeline_GL-DPPD-7101_Versions/GL-DPPD-7101-G.md)|[NF_RCP-G_2.0.0](NF_RCP)|24.10.4|
+|*[GL-DPPD-7115.md](../Pipeline_GL-DPPD-7115_Versions/GL-DPPD-7115.md)|[NF_RCP-G_2.0.0](NF_RCP)|24.10.4|
 |[GL-DPPD-7101-F.md](../Pipeline_GL-DPPD-7101_Versions/GL-DPPD-7101-F.md)|[NF_RCP-F_1.0.4](https://github.com/nasa/GeneLab_Data_Processing/tree/NF_RCP-F_1.0.4/RNAseq/Workflow_Documentation/NF_RCP-F)|22.10.1|
 
 *Current GeneLab Pipeline/Workflow Implementation