Skip to content

Commit 97b1ac2

Browse files
torres-alexistorres-alexis
committed
updates until microbes implementation
1 parent 541f721 commit 97b1ac2

File tree

83 files changed

+12398
-1536
lines changed

Some content is hidden

Large Commits have some content hidden by default. Use the searchbox below for content that may be hidden.

83 files changed

+12398
-1536
lines changed

‎RNAseq/Pipeline_GL-DPPD-7101_Versions/GL-DPPD-7101-G.md

Lines changed: 369 additions & 759 deletions
Large diffs are not rendered by default.

‎RNAseq/Pipeline_GL-DPPD-7101_Versions/Microbes.md

Whitespace-only changes.

‎RNAseq/README.md

Lines changed: 2 additions & 2 deletions
Original file line numberDiff line numberDiff line change
@@ -1,9 +1,9 @@
11
# GeneLab bioinformatics processing pipeline for Illumina RNA-sequencing data
22

3-
> **The document [`GL-DPPD-7101-F.md`](Pipeline_GL-DPPD-7101_Versions/GL-DPPD-7101-F.md) holds an overview and example commands for how GeneLab processes RNAseq datasets. See the [Repository Links](#repository-links) descriptions below for more information. Processed data output files and a GeneLab data processing summary is provided for each GLDS dataset in the [Open Science Data Repository (OSDR)](https://osdr.nasa.gov/bio/repo/).**
3+
> **The document [`GL-DPPD-7101-G.md`](Pipeline_GL-DPPD-7101_Versions/GL-DPPD-7101-G.md) holds an overview and example commands for how GeneLab processes RNAseq datasets. See the [Repository Links](#repository-links) descriptions below for more information. Processed data output files and a GeneLab data processing summary is provided for each GLDS dataset in the [Open Science Data Repository (OSDR)](https://osdr.nasa.gov/bio/repo/).**
44
55
---
6-
6+
<img src="images/pipeline_diagram.png" align="center" alt=""/>
77
<img src="images/RNAseq_pipeline_diagram.png" align="center" alt=""/>
88

99
---

‎RNAseq/Workflow_Documentation/NF_RCP-F/workflow_code/bin/dge_annotation_R_scripts.zip

-11.4 KB
Binary file not shown.

‎RNAseq/Workflow_Documentation/NF_RCP-F/workflow_code/bin/dge_annotation_R_scripts/Add_Gene_Annotations.Rmd

Lines changed: 0 additions & 107 deletions
This file was deleted.

‎RNAseq/Workflow_Documentation/NF_RCP-F/workflow_code/bin/dge_annotation_R_scripts/Generate_PCA_Table.Rmd

Lines changed: 0 additions & 86 deletions
This file was deleted.

0 commit comments

Comments
 (0)