Update update_assay_table.py

remove "R1" from single-end unmapped.fastq.gz suffix

Author: bnovak32

RNAseq/Workflow_Documentation/NF_RCP/workflow_code/bin/update_assay_table.py

@@ -687,15 +687,15 @@ def add_unmapped_reads_column(df, glds_prefix, runsheet_df=None, mode=""):
                     values.append(f"{glds_prefix}{sample}_R1_unmapped.fastq.gz,{glds_prefix}{sample}_R2_unmapped.fastq.gz")
                 else:
                     # For single-end data
-                    values.append(f"{glds_prefix}{sample}_R1_unmapped.fastq.gz")
+                    values.append(f"{glds_prefix}{sample}_unmapped.fastq.gz")
             else:
                 # Default mode (STAR)
                 if is_paired:
                     # For paired-end data with STAR
                     values.append(f"{glds_prefix}{sample}_R1_unmapped.fastq.gz,{glds_prefix}{sample}_R2_unmapped.fastq.gz")
                 else:
                     # For single-end data with STAR
-                    values.append(f"{glds_prefix}{sample}_R1_unmapped.fastq.gz")
+                    values.append(f"{glds_prefix}{sample}_unmapped.fastq.gz")
 
     # Add the column to the dataframe
     df = update_column(df, column_name, values, alternative_names)
@@ -1417,4 +1417,4 @@ def main():
         sys.exit(1)
 
 if __name__ == "__main__":
-    main()
+    main()