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---
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- ** Date:** September 15, 2021
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- ** Revision:** -
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+ ** Date:** 2024
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+ ** Revision:** -A
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** Document Number:** GL-DPPD-7107
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** Submitted by:**
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- Michael D. Lee (GeneLab Analysis Team)
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+ Olabiyi A. Obayomi (GeneLab Analysis Team)
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** Approved by:**
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Sylvain Costes (GeneLab Project Manager)
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Samrawit Gebre (GeneLab Deputy Project Manager and Interim GeneLab Configuration Manager)
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- Amanda Saravia-Butler (GeneLab Data Processing Lead)
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- Jonathan Galazka (GeneLab Project Scientist)
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+ Barbara Novak (GeneLab Data Processing Lead)
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+ Amanda Saravia-Butler (GeneLab Science Lead)
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+ Lauren Sanders (OSDR Project Scientist)
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---
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@@ -55,7 +56,7 @@ Jonathan Galazka (GeneLab Project Scientist)
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| megahit| 1.2.9 | [ https://github.com/voutcn/megahit#megahit ] ( https://github.com/voutcn/megahit#megahit ) |
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| bit| 1.8.53 | [ https://github.com/AstrobioMike/bioinf_tools#bioinformatics-tools-bit ] ( https://github.com/AstrobioMike/bioinf_tools#bioinformatics-tools-bit ) |
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| bowtie2| 2.4.1 | [ https://github.com/BenLangmead/bowtie2#overview ] ( https://github.com/BenLangmead/bowtie2#overview ) |
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- | samtools| 1.2 | [ https://github.com/samtools/samtools#samtools ] ( https://github.com/samtools/samtools#samtools ) |
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+ | samtools| 1.20 | [ https://github.com/samtools/samtools#samtools ] ( https://github.com/samtools/samtools#samtools ) |
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| prodigal| 2.6.3 | [ https://github.com/hyattpd/Prodigal#prodigal ] ( https://github.com/hyattpd/Prodigal#prodigal ) |
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| KOFamScan| 1.3.0 | [ https://github.com/takaram/kofam_scan#kofamscan ] ( https://github.com/takaram/kofam_scan#kofamscan ) |
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| CAT| 5.2.3 | [ https://github.com/dutilh/CAT#cat-and-bat ] ( https://github.com/dutilh/CAT#cat-and-bat ) |
@@ -64,7 +65,7 @@ Jonathan Galazka (GeneLab Project Scientist)
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| gtdbtk| 2.4.0 | [ https://github.com/Ecogenomics/GTDBTk ] ( https://github.com/Ecogenomics/GTDBTk ) |
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|KEGGDecoder| 1.2.2 |[ https://github.com/bjtully/BioData/tree/master/KEGGDecoder#kegg-decoder ] ( https://github.com/bjtully/BioData/tree/master/KEGGDecoder#kegg-decoder )
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| HUMAnN3| 3.9 | [ https://huttenhower.sph.harvard.edu/humann3/ ] ( https://huttenhower.sph.harvard.edu/humann3/ ) |
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- | MetaPhlAn3| 4.10 | [ https://github.com/biobakery/MetaPhlAn/tree/3.0 ] ( https://github.com/biobakery/MetaPhlAn/tree/3.0 ) |
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+ | MetaPhlAn3| 4.1.0 | [ https://github.com/biobakery/MetaPhlAn/tree/3.0 ] ( https://github.com/biobakery/MetaPhlAn/tree/3.0 ) |
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---
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