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update docker images
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RNAseq/Workflow_Documentation/NF_RCP-G/workflow_code/conf/by_docker_image.config

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@@ -30,8 +30,8 @@ process {
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}
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withName: 'MULTIQC' {
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// MultiQC 1.25.1 (09/30/2024)
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container = "quay.io/biocontainers/multiqc:1.25.1--pyhdfd78af_0"
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// MultiQC 1.26 (12/21/2024)
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container = "quay.io/biocontainers/multiqc:1.26--pyhdfd78af_0"
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}
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withName: 'TRIMGALORE' {
@@ -40,7 +40,7 @@ process {
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}
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withName: 'BUILD_STAR_INDEX|ALIGN_STAR' {
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// STAR 2.7.11b (01/24/2024)
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// STAR 2.7.11b (01/24/2024
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container = "quay.io/biocontainers/star:2.7.11b--h43eeafb_1"
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}
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@@ -51,14 +51,14 @@ process {
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}
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withName: 'GET_ACCESSIONS|FETCH_ISA|ISA_TO_RUNSHEET|RUNSHEET_FROM_ISA|GENERATE_MD5SUMS|SOFTWARE_VERSIONS|UPDATE_ISA_TABLES|PARSE_QC_METRICS' {
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container = "quay.io/nasa_genelab/dp_tools:1.35-rc.4"
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container = "quay.io/nasa_genelab/dp_tools:1.3.5"
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}
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withLabel: 'VV' {
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container = "quay.io/j_81/dp_tools:1.3.4"
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// container = "quay.io/nasa_genelab/dp_tools:1.3.5"
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}
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// withName: 'QUALIMAP_BAM_QC|QUALIMAP_RNASEQ_QC' {
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// container = "quay.io/biocontainers/qualimap:2.3--hdfd78af_0"
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container = "quay.io/biocontainers/qualimap:2.3--hdfd78af_0"
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// }
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withName: 'GET_MAX_READ_LENGTH|ASSESS_STRANDEDNESS' {

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