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1 parent d5a1cdd commit 5e01340Copy full SHA for 5e01340
Microarray/Affymetrix/Workflow_Documentation/NF_MAAffymetrix/workflow_code/modules/RUNSHEET_FROM_GLDS.nf
@@ -8,7 +8,7 @@ process RUNSHEET_FROM_GLDS {
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input:
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val(osdAccession)
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val(gldsAccession)
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- path("dp_tools__agilent_1_channel")
+ path("dp_tools__affymetrix")
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output:
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path("${ osdAccession }_microarray_v?_runsheet.csv"), emit: runsheet
@@ -19,10 +19,10 @@ process RUNSHEET_FROM_GLDS {
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"""
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dpt-get-isa-archive --accession ${ osdAccession }
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- ls dp_tools__agilent_1_channel
+ ls dp_tools__affymetrix
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dpt-isa-to-runsheet --accession ${ osdAccession } \
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- --plugin-dir dp_tools__agilent_1_channel \
+ --plugin-dir dp_tools__affymetrix \
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--isa-archive *.zip ${ injects }
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}
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