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add no-home + bind local path to same container path
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  • GeneLab_Reference_Annotations/Workflow_Documentation/GL_RefAnnotTable-A

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GeneLab_Reference_Annotations/Workflow_Documentation/GL_RefAnnotTable-A/README.md

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@@ -106,9 +106,9 @@ While in the directory containing the `GL_RefAnnotTable-A_1.1.0` folder that was
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```bash
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singularity exec -B $(pwd)/GL_RefAnnotTable-A_1.1.0:/work \
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singularity exec --no-home -B $(pwd)/GL_RefAnnotTable-A_1.1.0:$(pwd)/GL_RefAnnotTable-A_1.1.0 \
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$SINGULARITY_CACHEDIR/quay.io-nasa_genelab-gl-refannottable-a-1.1.0.img \
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Rscript /work/GL-DPPD-7110-A_build-genome-annots-tab.R 'Mus musculus'
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Rscript GL_RefAnnotTable-A_1.1.0/GL-DPPD-7110-A_build-genome-annots-tab.R 'Mus musculus'
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```
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<br>
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#### Using Singularity
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```bash
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singularity exec -B $(pwd)/GL_RefAnnotTable-A_1.1.0:/work \
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singularity exec --no-home -B $(pwd)/GL_RefAnnotTable-A_1.1.0:$(pwd)/GL_RefAnnotTable-A_1.1.0 \
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$SINGULARITY_CACHEDIR/quay.io-nasa_genelab-gl-refannottable-a-1.1.0.img \
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Rscript /work/install-org-db.R 'Bacillus subtilis'
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Rscript GL_RefAnnotTable-A_1.1.0/install-org-db.R 'Bacillus subtilis'
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```
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<br>

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