NF_MAAgilent1ch: address #96

cyouh95 · cyouh95 · commit 2bbe8e995e02 · 2024-09-30T18:06:20.000-07:00
diff --git a/Microarray/Agilent_1-channel/Workflow_Documentation/NF_MAAgilent1ch/workflow_code/bin/Agile1CMP.qmd b/Microarray/Agilent_1-channel/Workflow_Documentation/NF_MAAgilent1ch/workflow_code/bin/Agile1CMP.qmd
@@ -530,7 +530,10 @@ if (organism %in% c("athaliana")) {
             values = probe_id_chunk, 
             mart = ensembl)
 
-    df_mapping <- df_mapping %>% dplyr::bind_rows(chunk_results)
+    if (nrow(chunk_results) > 0) {
+      df_mapping <- df_mapping %>% dplyr::bind_rows(chunk_results)
+    }
+    
     Sys.sleep(10) # Slight break between requests to prevent back-to-back requests
   }
 }

Original file line number	Diff line number	Diff line change
`@@ -530,7 +530,10 @@ if (organism %in% c("athaliana")) {`
`530`	`530`	`values = probe_id_chunk,`
`531`	`531`	`mart = ensembl)`
`532`	`532`
`533`		`- df_mapping <- df_mapping %>% dplyr::bind_rows(chunk_results)`
	`533`	`+ if (nrow(chunk_results) > 0) {`
	`534`	`+ df_mapping <- df_mapping %>% dplyr::bind_rows(chunk_results)`
	`535`	`+ }`
	`536`	`+`
`534`	`537`	`Sys.sleep(10) # Slight break between requests to prevent back-to-back requests`
`535`	`538`	`}`
`536`	`539`	`}`