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Copy file name to clipboardExpand all lines: Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B/README.md
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*`--specify-runsheet` - specifies the runsheet to use when multiple runsheets are generated
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>*Optional parameter used in Approach 1 for datasets that have multiple assays for the same amplicon target (e.g. [OSD-249](https://osdr.nasa.gov/bio/repo/data/studies/OSD-249)).*
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*`--visualizations TRUE/FALSE` - ifset to TRUE, the [visualizations script](workflow_code/visualizations/Illumina-R-visualizations.R) will be run. Default: FALSE
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