Fixed missing required output issue

Author: olabiyi

Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B/workflow_code/nextflow.config

@@ -172,7 +172,7 @@ process {
                   container = "olabiyi/r-dada-decipher-biomformat:1.0"
                   memory = "200 GB"
                   cpus = 10
-                  publishDir = [[path: params.filtered_reads_dir, pattern: "Filtered_Sequence_Data/*.gz",
+                  publishDir = [[path: params.filtered_reads_dir, pattern: "Filtered_Sequence_Data/*",
                                 mode: params.publishDir_mode, saveAs: { fn -> fn.substring(fn.lastIndexOf('/')+1)}],
                                 [path: params.final_outputs_dir , pattern: "final_outputs/*.{tsv,biom,fasta}",
                                 mode: params.publishDir_mode, saveAs: { fn -> fn.substring(fn.lastIndexOf('/')+1)}]]