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Fixed pipeline name
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  • Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B/workflow_code

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Amplicon/Illumina/Workflow_Documentation/SW_AmpIllumina-B/workflow_code/main.nf

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@@ -12,7 +12,7 @@ c_reset = "\033[0m";
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**************************************************/
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if (params.help) {
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println()
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println("Nextflow Amp454IonTor Consensus Pipeline: $workflow.manifest.version")
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println("Nextflow AmpIllumina Consensus Pipeline: $workflow.manifest.version")
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println("USAGE:")
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println("Example 1: Submit and run jobs with slurm in singularity containers.")
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println(" > nextflow run main.nf -resume -profile slurm_sing --csv_file PE_file.csv --target_region 16S --F_primer AGAGTTTGATCCTGGCTCAG --R_primer CTGCCTCCCGTAGGAGT")
@@ -90,7 +90,7 @@ if (params.help) {
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}
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log.info """
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Nextflow Amp454IonTor Consensus Pipeline: $workflow.manifest.version
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Nextflow AmpIllumina Consensus Pipeline: $workflow.manifest.version
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You have set the following parameters:
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Input csv file : ${params.csv_file}

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