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make local.config match slurm.config
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  • RNAseq/Workflow_Documentation/NF_RCP/workflow_code/conf

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RNAseq/Workflow_Documentation/NF_RCP/workflow_code/conf/local.config

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -51,17 +51,17 @@ process {
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cpus = { 8 }
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memory = { 8.GB * task.attempt }
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errorStrategy = 'retry'
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maxRetries = 3
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maxRetries = 4
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}
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withName:ALIGN_STAR {
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cpus = { 8 }
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memory = { 40.GB * task.attempt }
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errorStrategy = 'retry'
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maxRetries = 0
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maxRetries = 3
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}
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withName:'BUILD_STAR_INDEX|BUILD_RSEM_INDEX' {
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cpus = { 16 * task.attempt }
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memory = { 40.GB * task.attempt }
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memory = { 60.GB * task.attempt }
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}
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// rnaseq_microbes specific
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withName:'VV_BOWTIE2_ALIGNMENT|VV_FEATURECOUNTS|QUANTIFY_FEATURECOUNTS_GENES|REMOVE_RRNA_FEATURECOUNTS' {

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