No module named 'boto3'

[Payam-Ebadi]

Hello Everyone
Can somebody help me with the following error in PSV:

File "/home/grid/miniconda3/envs/pipeline-structural-variation-v2/lib/python3.6/site-packages/snakemake/init.py", line 593, in snakemake
snakefile, overwrite_first_rule=True, print_compilation=print_compilation
File "/home/grid/miniconda3/envs/pipeline-structural-variation-v2/lib/python3.6/site-packages/snakemake/workflow.py", line 1083, in include
if is_local_file(snakefile):
File "/home/grid/miniconda3/envs/pipeline-structural-variation-v2/lib/python3.6/site-packages/snakemake/common.py", line 65, in is_local_file
from smart_open import parse_uri
File "/home/grid/miniconda3/envs/pipeline-structural-variation-v2/lib/python3.6/site-packages/smart_open/init.py", line 1, in
from .smart_open_lib import *
File "/home/grid/miniconda3/envs/pipeline-structural-variation-v2/lib/python3.6/site-packages/smart_open/smart_open_lib.py", line 72, in
import smart_open.s3 as smart_open_s3
File "/home/grid/miniconda3/envs/pipeline-structural-variation-v2/lib/python3.6/site-packages/smart_open/s3.py", line 3, in
import boto3
ModuleNotFoundError: No module named 'boto3'

thank you very much.

[Payam-Ebadi]

Guys , I already found my answer:

Don't use sudo in a virtual environment because it ignores the environment's variables and therefore sudo pip refers to your global pip installation.
So with your environment activated, rerun pip install boto3 but without sudo.