v1.4.0

Added

• Added Circos.radar_chart() static method for radar chart plot
• Added Circos.chord_diagram() method as an alias for Circos.initialize_from_matrix()
• Added figsize argument to circos.plotfig() & circos.savefig() method

Changed

• Changed to ignore min_range & max_range options in Genbank and Gff genomic parser class

v1.3.0

Added

• Added show_confidence() method to TreeViz class (#48)

Fixed

• Fixed too many points in vector curves to reduce SVG file size (#56)
• Fixed Matrix.parse_fromto_table() to ignore 0 values and not throw an ZeroDivisionError (#49)

v1.2.0

Added

• Added circos.link_line() method (#45)

Fixed

• Fixed error caused by removal of strand property in SeqFeature (BioPython v1.82)

v1.1.0

Added

• Added label_formatter argument to Circos.initialize_from_tree() & track.tree() methods

Fixed

• Fixed calculation error of GC contents and GC skew for short sequence in Genbank class (#43)
• Fixed track.genomic_features() method to accept SeqFeature (not only list[SeqFeature])
• Fixed example tree file to shorten long species names

v1.0.0

Added

• Added newly reimplemented track.tree() method to enhance tree annotation functionality (Breaking Change)
• Added TreeViz class for handling tree property & annotation
• Added Circos.initialize_from_tree() staticmethod to more easily plot phylogenetic tree
• Added load_example_tree_file() function
• Added hs1 & mm39 dataset in load_eukaryote_example_dataset() function
• Added show_endlabel argument to track.xticks_by_interval() method
• Added width argument to track.heatmap() method
• Added center & r_center properties to Track class
• Added center property to Sector class
• Added warning message when adding a track with r > 100

Changed

• Changed Circos init argument sectors_start_pos to sector2start_pos (Breaking Change)
• Changed overall document site contents to make it better

Fixed

• Fixed track.heatmap() method to accept numerical list and numpy 1d-array
• Fixed circos.savefig() method to suppress memory leak during multiple plots

v0.5.1

Fixed

• Fixed a bug that gff.get_seqid2size() got incorrect multi-contig size (#33)

v0.5.0

Added

• Added track.stacked_bar() method for plotting vertical stacked bar
• Added track.stacked_barh() method for plotting horizontal stacked bar
• Added exception handling for too large circos space
• Added dataframe property to Matrix class

Fixed

• Fixed to accept Genbank TextIOWrapper object

v0.4.0

Added

• Added sector2clockwise option to enable plotting sector with anti-clockwise direction

Changed

• Changed linter flake8 to ruff

Fixed

• Fixed GFF parse algorithm to improve processing speed

v0.3.1

Added

• Added some methods to Genbank/Gff parser class for plotting genomic features in each contig/scaffold
• Added arc option to xxx.line() method to enable selecting arc or linear style
• Added mycoplasma_alvi.[gbk|gff] example to load_prokaryote_example_file() function

Fixed

• Fixed GCskew, GCcontent calculation error when biopython<=1.79 is installed

v0.3.0

Added

• Added circos.colorbar() method
• Added track.grid() method
• Added circos.ax property

Fixed

• Fixed track.line() bug when plotting minus direction