Update to use uv for environment management, setuptools-scm for version

Author: morganjwilliams

.gitattributes

@@ -1,5 +1,3 @@
-pyrolite/_version.py export-subst
-
 *.ipynb diff=jupyternotebook
 
 *.svg binary

MANIFEST.in

@@ -1,5 +1,3 @@
-include versioneer.py
-include pyrolite/_version.py
 include LICENSE
 recursive-include pyrolite/data/Aitchison *
 recursive-include pyrolite/data/geochem *

environment.yml

@@ -1,5 +1,5 @@
 [build-system]
-requires = ["setuptools>=61.0", "versioneer[toml]"]
+requires = ["setuptools>=80", "setuptools-scm[simple]>=8"]
 build-backend = "setuptools.build_meta"
 
 
@@ -8,14 +8,13 @@ name = "pyrolite"
 authors = [{ name = "Morgan Williams", email = "morgan.williams@csiro.au" }]
 description = "Tools for geochemical data analysis."
 license = { file = "LICENSE" }
-requires-python = ">=3.8"
+requires-python = ">=3.9"
 classifiers = [
     "Development Status :: 4 - Beta",
     "Intended Audience :: Science/Research",
     "Intended Audience :: Education",
     "Natural Language :: English",
     "Programming Language :: Python :: 3 :: Only",
-    "Programming Language :: Python :: 3.8",
     "Programming Language :: Python :: 3.9",
     "Programming Language :: Python :: 3.10",
     "Programming Language :: Python :: 3.11",
@@ -31,7 +30,7 @@ dependencies = [
     "numpydoc",
     "tinydb>4.1",     # >4.1 required for read-only access mode for JSON storage
     "periodictable",
-    "matplotlib<3.9",
+    "matplotlib!=3.8.4",
     "mpltern>=0.4.0",
     "scipy>=1.2",     # uses scipy.optimize.Bounds, added around 1.2
     "sympy>=1.7",
@@ -48,13 +47,11 @@ Changelog = "https://github.com/me/spam/blob/master/CHANGELOG.md"
 [project.optional-dependencies]
 docs = [
     "sphinx_rtd_theme",
-    "docutils<0.17",
+    # "docutils<0.17",
     "sphinx>=4",
     "sphinx-autodoc-annotation",
     "sphinx_gallery>=0.6.0",
     "recommonmark",
-    # "jupyterlite-sphinx",
-    # "jupyterlite-pyodide-kernel",
 ]
 db = ["pyodbc", "psycopg2"]
 test = ["pytest", "pytest-runner", "pytest-cov", "coverage", "coveralls"]
@@ -64,17 +61,14 @@ stats = ["statsmodels", "scikit-learn"] # statsmodels for conditional ke
 excel = ["xlrd", "openpyxl"]
 dev = [
     "pytest",
-    "versioneer",
     "ruff",
-    "isort",
     "twine",
     "pyrolite[test,docs,skl]",
     "build",
 ]
 
 [tool.setuptools.packages]
-find = { exclude = ['test*', "docs*"] } # "**/__pycache__/*"
-#  include = ["Aitchison/*.py"],
+find = { exclude = ['test*', "docs*"] }
 
 [tool.setuptools.dynamic]
 readme = { file = "README.md", content-type = "text/markdown" }
@@ -91,14 +85,6 @@ omit = [
     "*/_version.py",             # Ignore _version.py
 ]
 
-[tool.versioneer]
-VCS = "git"
-style = "pep440"
-versionfile_source = "pyrolite/_version.py"
-versionfile_build = "pyrolite/_version.py"
-tag_prefix = ""
-parentdir_prefix = "pyrolite-"
-
 [tool.pytest.ini_options]
 python_files = "*.py"
 addopts = "--assert=plain --cov=pyrolite --cov-report html --cov-report xml --cov-report term-missing"

pyproject.toml

@@ -2,10 +2,8 @@
 pyrolite: A set of tools for getting the most from your geochemical data.
 """
 
-from ._version import get_versions
+from ._version import __version__
 
-__version__ = get_versions()["version"]
-del get_versions
 
 import importlib
 import pkgutil