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R/clusterFunctionsSGE.R

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#'
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#' @description
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#' Cluster functions for Univa Grid Engine / Oracle Grid Engine /
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#' Sun Grid Engine (\url{https://www.univa.com/}).
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#' Sun Grid Engine (\url{https://altair.com/hpc-cloud-applications/}).
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#'
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#' Job files are created based on the brew template \code{template}. This
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#' file is processed with brew and then submitted to the queue using the

README.md

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performance computing systems managed by schedulers like Slurm, Sun Grid
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Engine, OpenLava, TORQUE/OpenPBS, Load Sharing Facility (LSF) or Docker
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Swarm (see the setup section in the
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[vignette](https://batchtools.mlr-org.com/batchtools/articles/batchtools.html)).
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[vignette](https://batchtools.mlr-org.com/articles/batchtools.html)).
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Main features:
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Next, you need to setup `batchtools` for your HPC (it will run
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sequentially otherwise). See the
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[vignette](https://mlr-org.github.io/batchtools/articles/batchtools.html#setup)
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for instructions.
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[vignette](https://batchtools.mlr-org.com/articles/batchtools.html) for
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instructions.
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## Why batchtools?
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[BatchJobs](https://github.com/tudo-r/BatchJobs/) and
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[BatchExperiments](https://github.com/tudo-r/Batchexperiments) will
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remain on CRAN, but new features are unlikely to be ported back. The
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[vignette](https://batchtools.mlr-org.com/batchtools/articles/batchtools.html#migration)
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[vignette](https://batchtools.mlr-org.com/articles/batchtools.html)
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contains a section comparing the packages.
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## Resources
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- [NEWS](https://batchtools.mlr-org.com/batchtools/news/)
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- [Function
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reference](https://batchtools.mlr-org.com/batchtools/reference/)
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- [Vignette](https://batchtools.mlr-org.com/batchtools/articles/batchtools.html)
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- [Function reference](https://batchtools.mlr-org.com/reference/)
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- [Vignette](https://batchtools.mlr-org.com/articles/batchtools.html)
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- [JOSS Paper](https://doi.org/10.21105/joss.00135): Short paper on
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batchtools. Please cite this if you use batchtools.
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- [Paper on
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BatchJobs/BatchExperiments](https://www.jstatsoft.org/v64/i11): The
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described concept still holds for batchtools and most examples work
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analogously (see the
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[vignette](https://batchtools.mlr-org.com/batchtools/articles/batchtools.html#migration)
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[vignette](https://batchtools.mlr-org.com/articles/batchtools.html)
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for differences between the packages).
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## Citation

man/makeClusterFunctionsSGE.Rd

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