mixcr error: Require clnx file type, got /mnt,

[singhd6]

[singhd6@cc-dclrilog62 BCR_SEQUENCING_DS_REANALYSIS]$ mixcr postanalysis individual \

-Xmx50g
--default-downsampling none
--default-weight-function none
--only-productive
--drop-outliers
--metadata "/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/metadata1.tsv"
--force-overwrite
--no-warnings
--verbose
"/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/H1_SUBJ066_IgG-A_S8_Complete_AIRR/result/H1-SUBJ066-IgG-A_S8.clns"
"/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/SUBJ001_IgM_S4_L001_Complete_AIRR/result/SUBJ001-IgM_S4_L001.clns"
"/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/A3_SUBJ018_IgM_S17_COMPLETE/result/A3-SUBJ018-IgM_S17_L001.clns"
"/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/B1_SUBJ027_IgG_A_S2_L001_Complete_AIRR/result/B1-SUBJ027-IgG-A_S2_L001.clns"
"/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/C2_SUBJ053_IgM_S11_COMPLETE_AIRR/result/C2-SUBJ053-IgM_S11_L001.clns"
"/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/C3_SUBJ046_IgM_S19_L001_Complete_AIRR/result/C3-SUBJ046-IgM_S19_L001.clns"
"/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/D1_SUBJ015_IgG_A_S4_L001_Complete/result/D1-SUBJ015-IgG-A_S4.clns"
"/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/E2_SUBJ059-IgM_S13_Complete_AIRR/result/E2-SUBJ059-IgM_S13_L001.clns"
"/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/F1_SUBJ065_IgG-A_S6_COMPLETE/result/F1-SUBJ065-IgG-A_S6.clns"
"/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/F2_SUBJ043_IgG-A_S14_AIRR/result/F2-SUBJ043-IgG-A_S14_L001.clns"
"/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/G1_SUBJ065_IgM_S7_Complete_AIRR/result_1st/G1-SUBJ065-IgM_S7_L001.clns"
"/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/G2_SUBJ043_IgM_S15_Complete_AIRR/result/G2-SUBJ043-IgM_S15.clns"
"/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/SUBJ011_IgM_S6_COMPLETE_AIRR/result/SUBJ011-IgM_S6_L001.clns"
"/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/SUBJ058_IgG_A_S7_L001_COMPLETE_AIRR/result/SUBJ058-IgG-A_S7_L001.clns"
"/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/SUBJ058_IgM_S8_L001_Complete_AIRR/result/SUBJ058-IgM_S8_L001.clns" \ "/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/SUBJ011_IgGA_S5/result/SUBJ011_IgGA_S5.clns" \ "/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/SUBJ001_IgG_S3_L001/result/SUBJ001-IgG-A_S3.clns" \ "/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/remaining_subjects/Missing VH sequences/E1_SUBJ015-IgM_S5/result/E1-SUBJ015-IgM_S5.clns" \ "/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/remaining_subjects/Missing VH sequences/C1_SUBJ027_IgM_S3/result/C1_SUBJ027_IgM_S3.clns" \ "/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/remaining_subjects/Missing VH sequences/D2_SUBJ059_IgGA_S12/result/D2_SUBJ059_IgG-A_S12.clns" \ "/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/remaining_subjects/Missing VH sequences/B3_SUBJ046_IgGA_S18/result/B3-SUBJ046-IgG-A_S18.clns" \ "/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/remaining_subjects/Missing VH sequences/B2_SUBJ053_IgGA_S10/result/B2_SUBJ053_IgGA_S10.clns" \ "/mnt/beegfs/singhd6/Divya_data/vhseq/mixcr_analysis/BCR_SEQUENCING_DS_REANALYSIS/individual_All_result.json.gz"
4.4.0; built=Wed Jul 05 14:34:56 EDT 2023; rev=29721c996b; lib=repseqio.v3.0.1
Require clnx file type, got /mnt
[singhd6@cc-dclrilog62 BCR_SEQUENCING_DS_REANALYSIS]$

[mizraelson]

"clnx" means "clna" or "clns". In your case the issue is with some extra spaces or other formatting of the command because "/mnt" is treated as an input file, without the rest of the path.