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README.md

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[![Build Status](https://travis-ci.org/mikessh/vdjtools.svg?branch=master)](https://travis-ci.org/mikessh/vdjtools)
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[![JitPack](https://jitpack.io/v/mikessh/vdjtools.svg)](https://jitpack.io/#mikessh/vdjtools)
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## VDJtools
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### Some recent publications where VDJtools was used:
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- Feng Y et al. A mechanism for expansion of regulatory T-cell repertoire and its role in self-tolerance. [Nature 2015; doi:10.1038/nature16141](http://www.nature.com/nature/journal/vaop/ncurrent/full/nature16141.html)
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- Britanova OV et al. Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians. [J Immunol 2016; doi:10.4049/jimmunol.1600005](http://www.jimmunol.org/content/196/12/5005.short)
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- Britanova OV et al. Dynamics of Individual T Cell Repertoires: From Cord Blood to Centenarians. [J Immunol 2016; doi:10.4049/jimmunol.1600005](http://www.jimmunol.org/content/196/12/5005.short)
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- Joachims ML et al. Single-cell analysis of glandular T cell receptors in Sjögren’s syndrome. [JCI Insight 2016; doi:10.1172/jci.insight.85609](https://insight.jci.org/articles/view/85609)
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- Plitas G et al. Regulatory T cells exhibit distinct features in human breast cancer. [Immunity 2017; doi.org:10.1016/j.immuni.2016.10.032](http://www.sciencedirect.com/science/article/pii/S1074761316304435)
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- Izraelson M et al. Comparative Analysis of Murine T Cell Receptor Repertoires. [Immunology 2017; doi.org:10.1111/imm.12857](http://onlinelibrary.wiley.com/doi/10.1111/imm.12857/full)
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- Bolotin DA et al. Antigen receptor repertoire profiling from RNA-seq data. [Nat Biotech 2017; doi:10.1038/nbt.3979](https://www.nature.com/articles/nbt.3979)
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- Meng W et al. An atlas of B-cell clonal distribution in the human body. [Nat Biotech 2017; doi:10.1038/nbt.3942](https://www.nature.com/articles/nbt.3942)
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- Meng W et al. An atlas of B-cell clonal distribution in the human body. [Nat Biotech 2017; doi:10.1038/nbt.3942](https://www.nature.com/articles/nbt.3942)

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