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Running Workflows

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Adina Shanholtz edited this page Mar 20, 2023 · 2 revisions

Running Workflows Landing Page

Resources for running workflows in Cromwell on Azure.

Example Workflow: Convert FASTQ files to uBAM file
Running Common Workflows
Modifying WDLs for Azure
Managing your workflow

Toggle table of contents Pages 53

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Release Notes and Announcements

6.0.0 LATEST
Migrating from 4.0.0

Getting Started

Deploy Cromwell on Azure
Deploy Private Cromwell on Azure
Building the Deployment Executable Yourself
Architecture Diagram

Running Workflows

Example Workflow: Convert FASTQ files to uBAM file
Running Common Workflows
Modifying WDLs for Azure
Managing your workflow
Using cromshell with CoA

Services

Cromwell on AKS Instructions and Troubleshooting
[Deprecated] Update MySQL in Cromwell on Azure

FAQ and Troubleshooting

Known Issues and Mitigation
Setup
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Customizing Your Instance
Performance & Optimization
Miscellaneous

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