From 3ba9d47089363a87f21e7e24262556f2a5235472 Mon Sep 17 00:00:00 2001 From: A Wokaty Date: Tue, 15 Apr 2025 13:38:10 -0400 Subject: [PATCH 1/3] bump x.y.z version to even y prior to creation of RELEASE_3_21 branch --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 5e9792d..7c3807d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: iSEEtree -Version: 1.1.4 +Version: 1.2.0 Authors@R: c(person(given = "Giulio", family = "Benedetti", role = c("aut", "cre"), email = "giulio.benedetti@utu.fi", From 75c8cdde89f3247129026cbdf6b4eaaab18d972f Mon Sep 17 00:00:00 2001 From: A Wokaty Date: Tue, 15 Apr 2025 13:38:11 -0400 Subject: [PATCH 2/3] bump x.y.z version to odd y following creation of RELEASE_3_21 branch --- DESCRIPTION | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/DESCRIPTION b/DESCRIPTION index 7c3807d..2d5c24d 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: iSEEtree -Version: 1.2.0 +Version: 1.3.0 Authors@R: c(person(given = "Giulio", family = "Benedetti", role = c("aut", "cre"), email = "giulio.benedetti@utu.fi", From d145d738e4b8fc140aa85664c761dc0873fa17d2 Mon Sep 17 00:00:00 2001 From: Giulio Benedetti Date: Tue, 6 May 2025 14:29:58 +0300 Subject: [PATCH 3/3] Align args to iSEE 2.19.4 --- DESCRIPTION | 4 ++-- R/iSEE-default.R | 3 ++- R/utils.R | 2 +- man/iSEE.Rd | 4 ++++ man/utils.Rd | 2 +- 5 files changed, 10 insertions(+), 5 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 5e9792d..30102b9 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,5 +1,5 @@ Package: iSEEtree -Version: 1.1.4 +Version: 1.2.1 Authors@R: c(person(given = "Giulio", family = "Benedetti", role = c("aut", "cre"), email = "giulio.benedetti@utu.fi", @@ -20,7 +20,7 @@ License: Artistic-2.0 Encoding: UTF-8 Depends: R (>= 4.4.0), - iSEE (>= 2.19.2) + iSEE (>= 2.19.4) Imports: ape, ggplot2, diff --git a/R/iSEE-default.R b/R/iSEE-default.R index 4b85126..f78a1e5 100644 --- a/R/iSEE-default.R +++ b/R/iSEE-default.R @@ -56,7 +56,8 @@ setMethod("iSEE", "TreeSummarizedExperiment", AbundancePlot(), AbundanceDensityPlot(), ReducedDimensionPlot(), ComplexHeatmapPlot()), extra = NULL, colormap = ExperimentColorMap(), landingPage = createLandingPage(), tour = NULL, appTitle = NULL, - runLocal = TRUE, voice = FALSE, bugs = FALSE, saveState = NULL, ...) { + tabTitle = NULL, runLocal = TRUE, voice = FALSE, bugs = FALSE, + saveState = NULL, ...) { initial <- .check_all_panels(se, initial) diff --git a/R/utils.R b/R/utils.R index ab400a9..4158c4e 100644 --- a/R/utils.R +++ b/R/utils.R @@ -14,7 +14,7 @@ #' corresponding to panel objects in \code{initial}. #' #' @param panel.fun \code{Function scalar}. The element of \code{se} whose -#' existance should be checked. +#' existence should be checked. #' #' @param wtext \code{Character scalar}. Text of the warning message returned #' if \code{panel.fun} does not exist or is empty. diff --git a/man/iSEE.Rd b/man/iSEE.Rd index 66168db..3ef0b92 100644 --- a/man/iSEE.Rd +++ b/man/iSEE.Rd @@ -14,6 +14,7 @@ iSEE( landingPage = createLandingPage(), tour = NULL, appTitle = NULL, + tabTitle = NULL, runLocal = TRUE, voice = FALSE, bugs = FALSE, @@ -43,6 +44,9 @@ Ignored if \code{se} is not supplied.} \item{appTitle}{A string indicating the title to be displayed in the app. If not provided, the app displays the version info of \code{\link[iSEE]{iSEE}}.} +\item{tabTitle}{A string indicating the title to be displayed in the browser +tab. If not provided, the tab is named \code{"iSEE"}.} + \item{runLocal}{A logical indicating whether the app is to be run locally or remotely on a server, which determines how documentation will be accessed.} \item{voice}{A logical indicating whether the voice recognition should be enabled.} diff --git a/man/utils.Rd b/man/utils.Rd index ad52f46..41217be 100644 --- a/man/utils.Rd +++ b/man/utils.Rd @@ -21,7 +21,7 @@ object.} corresponding to panel objects in \code{initial}.} \item{panel.fun}{\code{Function scalar}. The element of \code{se} whose -existance should be checked.} +existence should be checked.} \item{wtext}{\code{Character scalar}. Text of the warning message returned if \code{panel.fun} does not exist or is empty.}