Fix RDA test

RiboRings · RiboRings · commit 6817ecd17993 · 2025-03-19T12:30:48.000+02:00
diff --git a/R/class-PrevalencePlot.R b/R/class-PrevalencePlot.R
@@ -1,7 +1,7 @@
 #' Prevalence plot
 #'
 #' Prevalence plot of all or agglomerated features in a
-#' \code{\link[SummarizedExperiment:SummarizedExperiment-constructor]{SummarizedExperiment}}
+#' \code{\link[SummarizedExperiment:SummarizedExperiment-class]{SummarizedExperiment}}
 #' object. The panel implements \code{\link[miaViz:plotAbundance]{plotPrevalence}}
 #' to generate the plot.
 #'
diff --git a/man/PrevalencePlot.Rd b/man/PrevalencePlot.Rd
diff --git a/tests/testthat/test-RDAPlot.R b/tests/testthat/test-RDAPlot.R
@@ -10,7 +10,7 @@ test_that("RDAPlot", {
   tse <- enterotype
   panel <- RDAPlot()
   
-  tse <- mia::runRDA(tse,
+  tse <- mia::runRDA(tse, assay.type = "counts",
       formula = assay ~ ClinicalStatus + Gender + Age,
       na.action = na.exclude)
   
