Merge pull request #189 from mcode/develop

v2.2.0

Author: Dtphelan1

package-lock.json

@@ -1,6 +1,6 @@
 {
   "name": "mcode-extraction-framework",
-  "version": "2.1.0",
+  "version": "2.2.0",
   "description": "",
   "contributors": [
     "Julia Afeltra <jafeltra@mitre.org>",

package.json

@@ -32,11 +32,11 @@ function formatData(conditionData, patientId) {
       subject: {
         id: patientId,
       },
-      code: {
-        code,
+      code: code.split('|').map((c) => ({
+        code: c,
         system: codeSystem,
         display: displayName,
-      },
+      })),
       category: category.split('|'),
       dateOfDiagnosis: !dateOfDiagnosis ? null : formatDateTime(dateOfDiagnosis),
       clinicalStatus,

src/extractors/CSVConditionExtractor.js

@@ -48,8 +48,7 @@ function categoryArrayTemplate(array) {
 function codingTemplate({ code }) {
   return {
     code: {
-      coding: [coding(code),
-      ],
+      coding: code.map((c) => coding(c)),
     },
   };
 }
@@ -100,7 +99,7 @@ function subjectTemplate({ subject }) {
 function conditionTemplate({
   subject, id, code, category, dateOfDiagnosis, clinicalStatus, verificationStatus, bodySite, laterality, histology,
 }) {
-  if (!(id && subject && code.system && code.code && category)) {
+  if (!(id && subject && code.every((c) => c.system && c.code) && category)) {
     throw Error('Trying to render a ConditionTemplate, but a required argument is missing; ensure that id, mrn, code, codesystem, and category are all present');
   }
 

src/templates/ConditionTemplate.js

@@ -9,11 +9,11 @@ const CONDITION_VALID_DATA = {
   subject: {
     id: 'example-subject-id',
   },
-  code: {
+  code: [{
     system: 'example-system',
     code: 'example-code',
     display: 'exampleDisplayName',
-  },
+  }],
   category: [
     'example-code',
   ],
@@ -33,10 +33,10 @@ const CONDITION_MINIMAL_DATA = {
   subject: {
     id: 'example-subject-id',
   },
-  code: {
+  code: [{
     system: 'example-system',
     code: 'example-code',
-  },
+  }],
   category: [
     'example-code',
   ],
@@ -97,11 +97,11 @@ describe('test Condition template', () => {
       subject: {
         id: 'example-subject-id',
       },
-      code: {
+      code: [{
         system: 'example-system',
         code: 'example-code',
         display: 'exampleDisplayName',
-      },
+      }],
       category: [
         'example-code',
       ],