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Merge pull request #82 from mayer79/cran-release
CRAN submission
2 parents 5e69834 + ddec2b5 commit 5171ba7

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‎CRAN-SUBMISSION‎

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Version: 2.6.0
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Date: 2024-08-17 15:06:30 UTC
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SHA: b46552ad32230999d13182b3cad2c073213c84eb
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Version: 2.6.1
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Date: 2024-12-07 08:49:37 UTC
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SHA: 5e698341f51b1a7f899c28302a0b9082c950ab28

‎cran-comments.md‎

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# missRanger 2.6.0
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# missRanger 2.6.1
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Hello CRAN
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Dear CRAN team
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This update
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- fixes a major bug,
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- and brings a long awaited feature of out-of-sample application of the imputation models.
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This update introduces a workaround around an incompatibility issue with {formula.tools}.
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## R CMD check (local)
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## revdepcheck results
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OK: 7
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OK: 6
2018
BROKEN: 0

‎revdep/README.md‎

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# Platform
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|field |value |
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|:--------|:--------------------------------------------------------|
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|version |R version 4.4.1 (2024-06-14 ucrt) |
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|os |Windows 11 x64 (build 22631) |
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|system |x86_64, mingw32 |
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|ui |RStudio |
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|language |(EN) |
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|collate |German_Switzerland.utf8 |
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|ctype |German_Switzerland.utf8 |
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|tz |Europe/Zurich |
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|date |2024-08-15 |
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|rstudio |2024.04.2+764 Chocolate Cosmos (desktop) |
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|pandoc |3.1.6 @ C:\Users\Michael\AppData\Local\Pandoc\pandoc.exe |
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|field |value |
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|:--------|:----------------------------------------|
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|version |R version 4.4.1 (2024-06-14 ucrt) |
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|os |Windows 11 x64 (build 22631) |
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|system |x86_64, mingw32 |
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|ui |RStudio |
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|language |(EN) |
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|collate |English_Switzerland.utf8 |
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|ctype |English_Switzerland.utf8 |
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|tz |Europe/Zurich |
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|date |2024-12-07 |
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|rstudio |2024.04.2+764 Chocolate Cosmos (desktop) |
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|pandoc |NA |
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# Dependencies
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|package |old |new |Δ |
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|:----------|:---------|:---------|:--|
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|missRanger |2.5.0 |2.6.0 |* |
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|FNN |1.1.4 |1.1.4 | |
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|ranger |0.16.0 |0.16.0 | |
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|Rcpp |1.0.13 |1.0.13 | |
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|RcppEigen |0.3.4.0.0 |0.3.4.0.0 | |
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|missRanger |2.6.0 |2.6.1 |* |
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|FNN |1.1.4.1 |1.1.4.1 | |
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|ranger |0.17.0 |0.17.0 | |
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|Rcpp |1.0.13-1 |1.0.13-1 | |
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|RcppEigen |0.3.4.0.2 |0.3.4.0.2 | |
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# Revdeps
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## Failed to check (3)
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|package |version |error |warning |note |
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|:---------------|:-------|:-----|:-------|:----|
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|marginaleffects |? | | | |
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|outqrf |1.0.0 |1 | | |
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|worcs |? | | | |
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‎revdep/cran.md‎

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## revdepcheck results
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We checked 7 reverse dependencies, comparing R CMD check results across CRAN and dev versions of this package.
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We checked 6 reverse dependencies (4 from CRAN + 2 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package.
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* We saw 0 new problems
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* We failed to check 0 packages
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* We failed to check 1 packages
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Issues with CRAN packages are summarised below.
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### Failed to check
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* outqrf (NA)

‎revdep/failures.md‎

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*Wow, no problems at all. :)*
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# marginaleffects
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<details>
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* Version:
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* GitHub: https://github.com/mayer79/missRanger
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* Source code: NA
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* Number of recursive dependencies: 0
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</details>
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## Error before installation
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### Devel
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```
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There are binary versions available but the source versions are later:
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binary source needs_compilation
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data.table 1.16.2 1.16.4 TRUE
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RcppArmadillo 14.2.0-1 14.2.2-1 TRUE
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textshaping 0.4.0 0.4.1 TRUE
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Binaries will be installed
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package 'abind' successfully unpacked and MD5 sums checked
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package 'AER' successfully unpacked and MD5 sums checked
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...
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package 'hardhat' successfully unpacked and MD5 sums checked
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package 'haven' successfully unpacked and MD5 sums checked
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package 'here' successfully unpacked and MD5 sums checked
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package 'highr' successfully unpacked and MD5 sums checked
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package 'Hmisc' successfully unpacked and MD5 sums checked
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package 'hms' successfully unpacked and MD5 sums checked
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package 'htmlTable' successfully unpacked and MD5 sums checked
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package 'htmltools' successfully unpacked and MD5 sums checked
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package 'htmlwidgets' successfully unpacked and MD5 sums checked
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package 'httpuv' successfully unpacked and MD5 sums checked
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4/PACKAGES'
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...
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4/PACKAGES'
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```
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### CRAN
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```
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There are binary versions available but the source versions are later:
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binary source needs_compilation
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data.table 1.16.2 1.16.4 TRUE
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RcppArmadillo 14.2.0-1 14.2.2-1 TRUE
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textshaping 0.4.0 0.4.1 TRUE
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Binaries will be installed
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package 'abind' successfully unpacked and MD5 sums checked
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package 'AER' successfully unpacked and MD5 sums checked
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...
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package 'hardhat' successfully unpacked and MD5 sums checked
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package 'haven' successfully unpacked and MD5 sums checked
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package 'here' successfully unpacked and MD5 sums checked
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package 'highr' successfully unpacked and MD5 sums checked
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package 'Hmisc' successfully unpacked and MD5 sums checked
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package 'hms' successfully unpacked and MD5 sums checked
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package 'htmlTable' successfully unpacked and MD5 sums checked
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package 'htmltools' successfully unpacked and MD5 sums checked
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package 'htmlwidgets' successfully unpacked and MD5 sums checked
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package 'httpuv' successfully unpacked and MD5 sums checked
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4/PACKAGES'
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...
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4/PACKAGES'
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```
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# outqrf
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<details>
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* Version: 1.0.0
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* GitHub: https://github.com/flystar233/outqrf
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* Source code: https://github.com/cran/outqrf
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* Date/Publication: 2024-09-10 09:10:02 UTC
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* Number of recursive dependencies: 93
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Run `revdepcheck::revdep_details(, "outqrf")` for more info
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</details>
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## In both
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* R CMD check timed out
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# worcs
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<details>
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* Version:
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* GitHub: https://github.com/mayer79/missRanger
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* Source code: NA
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* Number of recursive dependencies: 0
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</details>
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## Error before installation
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### Devel
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```
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There is a binary version available but the source version is later:
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binary source needs_compilation
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data.table 1.16.2 1.16.4 TRUE
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Binaries will be installed
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package 'abind' successfully unpacked and MD5 sums checked
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package 'askpass' successfully unpacked and MD5 sums checked
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package 'assertthat' successfully unpacked and MD5 sums checked
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package 'backports' successfully unpacked and MD5 sums checked
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...
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package 'RColorBrewer' successfully unpacked and MD5 sums checked
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package 'Rcpp' successfully unpacked and MD5 sums checked
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package 'RcppEigen' successfully unpacked and MD5 sums checked
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package 'RcppParallel' successfully unpacked and MD5 sums checked
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package 'remotes' successfully unpacked and MD5 sums checked
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package 'renv' successfully unpacked and MD5 sums checked
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package 'reshape2' successfully unpacked and MD5 sums checked
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package 'rlang' successfully unpacked and MD5 sums checked
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package 'rmarkdown' successfully unpacked and MD5 sums checked
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package 'rmdfiltr' successfully unpacked and MD5 sums checked
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4/PACKAGES'
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...
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4/PACKAGES'
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```
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### CRAN
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```
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There is a binary version available but the source version is later:
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binary source needs_compilation
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data.table 1.16.2 1.16.4 TRUE
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Binaries will be installed
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package 'abind' successfully unpacked and MD5 sums checked
206+
package 'askpass' successfully unpacked and MD5 sums checked
207+
package 'assertthat' successfully unpacked and MD5 sums checked
208+
package 'backports' successfully unpacked and MD5 sums checked
209+
...
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package 'RColorBrewer' successfully unpacked and MD5 sums checked
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package 'Rcpp' successfully unpacked and MD5 sums checked
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package 'RcppEigen' successfully unpacked and MD5 sums checked
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package 'RcppParallel' successfully unpacked and MD5 sums checked
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package 'remotes' successfully unpacked and MD5 sums checked
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package 'renv' successfully unpacked and MD5 sums checked
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package 'reshape2' successfully unpacked and MD5 sums checked
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package 'rlang' successfully unpacked and MD5 sums checked
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package 'rmarkdown' successfully unpacked and MD5 sums checked
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package 'rmdfiltr' successfully unpacked and MD5 sums checked
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/bioc/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/annotation/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4/PACKAGES'
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...
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/data/experiment/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/workflows/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4/PACKAGES'
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Warning: unable to access index for repository https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4:
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cannot open URL 'https://bioconductor.org/packages/3.18/books/bin/windows/contrib/4.4/PACKAGES'
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```

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