inconsistent-data errors in v0.14

[csbrasnett]

The new link generating (I think?) generates a bunch of inconsistent data info messages as soon as martinize2 is run, for all amber residues and 1 charmm one. Not too annoying, but probably concerning/not overly useful for unfamiliar users if we can get rid of them

    INFO - inconsistent-data - Discarding impropers between atoms N -C CA HN for link defined in residue CYSP in force field charmm because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue ALA in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue GLY in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue SER in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue THR in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue LEU in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue ILE in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue VAL in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue ASN in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue GLN in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue ARG in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue HID in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue HIE in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue HIP in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue TRP in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue PHE in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue TYR in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue GLU in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue ASP in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue LYS in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue ORN in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue DAB in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue LYN in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue PRO in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue HYP in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue CYS in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue CYM in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue CYX in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue MET in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue ASH in force field amber because it is disconnected.
    INFO - inconsistent-data - Discarding impropers between atoms CA +N C O for link defined in residue GLH in force field amber because it is disconnected.

[fgrunewald]

This comes from the updated RTP parser. There was some issues with link not having proper edges defined. I agree the warning is suboptimal. One option is to fix all these links. The other is to suppress this Info. @pckroon

[pckroon]

Maybe turn them into debug messages? But that would to quietly broken amber topologies. Fixing the links is preferable but also a lot of work.