MACS2 CPU and Memory Usage

Version of MACS2

macs2 2.0.10.20130404 (tag:beta)

Test data

human CTCF ChIP-seq, 65 Million reads, subsampled into 50, 40, 30, 20, 10, 5, 2 and 1 million reads.

Hardware

• CPU: AMD Opteron(tm) Processor 8439 SE 2,813 MHz x 48 cores
• Total Memory: 512G

Command line

macs2 callpeak -t CTCF_XM.bed.gz -c Ctrl_XM.bed.gz -n XM --call-summit