ImportError: cannot import name typeDict #166
Description
Hi,
Thanks for providing this useful tool! I tried to run tutorial but with the following error
MAESTRO scrna-init --platform 10x-genomics --species GRCh38 --cores 8 --rseqc --directory pbmc_1k_v3_fastqs --count-cutoff 1000 --gene-cutoff 500 --cell-cutoff 10 --mapindex /scratch/u/kfang/Software/MAESTRO/references/scRNA/Refdata_scRNA_MAESTRO_GRCh38_1.2.2/GRCh38_STAR_2.7.6a --whitelist /scratch/u/kfang/Software/MAESTRO/references/whitelist/3M-february-2018.txt --barcode-start 1 --barcode-length 16 --umi-start 17 --umi-length 12 --lisadir /scratch/u/kfang/Software/MAESTRO/references/annotation/hg38_1000_2.0.h5 --signature human.immune.CIBERSORT
Traceback (most recent call last):
File "/home/kfang/miniconda3/envs/MAESTRO/bin/MAESTRO", line 4, in <module>
__import__('pkg_resources').run_script('MAESTRO==1.5.1', 'MAESTRO')
File "/home/kfang/miniconda3/envs/MAESTRO/lib/python3.8/site-packages/pkg_resources/__init__.py", line 720, in run_script
self.require(requires)[0].run_script(script_name, ns)
File "/home/kfang/miniconda3/envs/MAESTRO/lib/python3.8/site-packages/pkg_resources/__init__.py", line 1559, in run_script
exec(code, namespace, namespace)
File "/home/kfang/miniconda3/envs/MAESTRO/lib/python3.8/site-packages/MAESTRO-1.5.1-py3.8.egg-info/scripts/MAESTRO", line 17, in <module>
from MAESTRO.scATAC_H5Process import *
File "/home/kfang/miniconda3/envs/MAESTRO/lib/python3.8/site-packages/MAESTRO/scATAC_H5Process.py", line 11, in <module>
import tables
File "/home/kfang/miniconda3/envs/MAESTRO/lib/python3.8/site-packages/tables/__init__.py", line 24, in <module>
from .utilsextension import (
File "tables/utilsextension.pyx", line 169, in init tables.utilsextension
ImportError: cannot import name typeDict
I wondered how I could solve this?
Best,
Kun