Question about the dimension differences (number of genes) in all non-neuronal cells from CZ cellxgene h5ad and rds files #16
Description
Dear authors,
First of all, Thank you for your hard work and great resources.
I was using all non-neuronal cells data downloaded from CZ cellxgene (https://data.humancellatlas.org/hca-bio-networks/nervous-system/atlases/brain-v1-0), and recently noticed that there are some differences in gene numbers of h5ad file and rds file.
Both files have the same cell numbers (888263), but the rds file has 59236 genes, while the h5ad file has 59357 genes.
I have pasted sdiff result showing only different entities; around 100 genes are missing in the rds file, while a few gene IDs are different.
Let me know how can I handle the differences.
Sincerely,
Heewoong Yang
sdiff -s scanpy_genes.txt seurat_genes.txt
ENSG00000112096 | ENSG00000291237
ENSG00000137808 <
ENSG00000161149 <
ENSG00000182230 <
ENSG00000203812 | ENSG00000288825
ENSG00000204092 <
ENSG00000205485 | ENSG00000290873
ENSG00000212951 <
ENSG00000215271 | ENSG00000290292
ENSG00000221995 <
ENSG00000224739 <
ENSG00000224745 <
ENSG00000225932 | ENSG00000288784
ENSG00000226377 <
ENSG00000226380 <
ENSG00000226403 <
ENSG00000227021 <
ENSG00000227220 <
ENSG00000227902 <
ENSG00000228139 <
ENSG00000228206 <
ENSG00000228906 <
ENSG00000229352 <
ENSG00000231575 <
ENSG00000232196 <
ENSG00000232295 <
ENSG00000233776 <
ENSG00000236166 <
ENSG00000236673 <
ENSG00000236740 <
ENSG00000236886 <
ENSG00000236996 <
ENSG00000237133 <
ENSG00000237513 <
ENSG00000237548 <
ENSG00000237838 <
ENSG00000239446 <
ENSG00000239467 <
ENSG00000239665 <
ENSG00000249860 <
ENSG00000251044 <
ENSG00000253878 <
ENSG00000254561 <
ENSG00000254740 <
ENSG00000255633 <
ENSG00000255823 <
ENSG00000256045 <
ENSG00000256222 <
ENSG00000256427 <
ENSG00000256618 <
ENSG00000256863 <
ENSG00000256892 <
ENSG00000258414 <
ENSG00000258808 <
ENSG00000258861 <
ENSG00000259444 <
ENSG00000259820 <
ENSG00000259834 <
ENSG00000259855 <
ENSG00000261068 <
ENSG00000261490 <
ENSG00000261534 <
ENSG00000261737 <
ENSG00000261773 <
ENSG00000261963 <
ENSG00000262668 <
ENSG00000267637 <
ENSG00000268955 <
ENSG00000269028 <
ENSG00000269900 <
ENSG00000269933 <
ENSG00000269966 <
ENSG00000270188 <
ENSG00000270394 <
ENSG00000270672 <
ENSG00000271043 <
ENSG00000271409 <
ENSG00000271734 <
ENSG00000271870 <
ENSG00000272040 <
ENSG00000272267 <
ENSG00000272354 <
ENSG00000272370 <
ENSG00000272551 <
ENSG00000272567 <
ENSG00000272880 <
ENSG00000272904 <
ENSG00000273301 <
ENSG00000273576 <
ENSG00000273614 <
ENSG00000273837 <
ENSG00000273888 <
ENSG00000273923 <
ENSG00000276814 <
ENSG00000277050 <
ENSG00000277077 | ENSG00000289133
ENSG00000277352 <
ENSG00000277666 <
ENSG00000277761 <
ENSG00000278198 <
ENSG00000278782 <
ENSG00000278955 <
ENSG00000279226 <
ENSG00000279769 <
ENSG00000279948 <
ENSG00000280058 <
ENSG00000280095 <
ENSG00000280250 <
ENSG00000280346 <
ENSG00000280374 <
ENSG00000280710 <
ENSG00000282080 <
ENSG00000282246 <
ENSG00000282965 <
ENSG00000283486 <
ENSG00000284299 <
ENSG00000284741 <
ENSG00000285106 <
ENSG00000285162 <
ENSG00000286601 <
ENSG00000286699 <
ENSG00000286949 <
ENSG00000286996 <
ENSG00000287116 <
ENSG00000287388 <
ENSG00000288541 <
ENSG00000288546 | ENSG00000289084
ENSG00000288639 <