Auto workflow dependency fails in some cases #40
Description
Issue Details
The current workflow dependency zip file creation feature fails for the following case.
If calling https://github.com/lilab-bcb/cumulus/blob/master/workflows/cellranger/cellranger_workflow.wdl locally:
alto cromwell run -m <server-name> -m cellranger_workflow.wdl -i inputs.json -b <Cloud-bucket-URI>
The job fails with the following error:
Failed to import '../cumulus/cumulus_adt.wdl' (reason 2 of 2): Failed to resolve '../cumulus/cumulus_adt.wdl' using resolver: 'http importer (no 'relative-to' origin)' (reason 1 of 1): Relative path
Solution Suggestion
Dockstore handles WDL import statements on relative paths with .. properly. Maybe we can borrow some idea there?
Urgency Level
Not urgent at all.