New Apios americana genomes and annotations

[StevenCannon-USDA]

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name: New genomes+annotations checklist
about: Checklist of tasks associated with new genome and annotation collections

Genus/species/collection names:

What are the collection types and names? Example:

• Apios/americana/annotations/LA2127.gnm1.ann1.QKWH

• Apios/americana/annotations/LA2127.gnm1_hap2.ann1.NT2R

• Apios/americana/genomes/LA2127.gnm1.KVMK

• Apios/americana/genomes/LA2127.gnm1_hap2.3WWC

• Add collection(s) to the Data Store

• Validate the README(s)

• Update about_this_collection.yml

• Calculate AHRD functional annotations

• Calculate gene family assignments (.gfa)

• Add to pan-gene set

• Load relevant mine

• Add BLAST targets

• Incorporate into GCV

• Update the jekyll collections listing

• Update browser configs

• run BUSCO

• Update DSCensor

• Add LINKOUTS to datastore, refresh linkout service

[adf-ncgr]

AHRD and BUSCOs are in place (both haps for each species); looks like gfas still need to be done, let me know if you want me to go ahead with that.