chore: update pre-commit hooks (#586)

* chore: update pre-commit hooks

updates:
- [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v5.0.0](pre-commit/pre-commit-hooks@v4.5.0...v5.0.0)
- [github.com/asottile/setup-cfg-fmt: v2.5.0 → v2.7.0](asottile/setup-cfg-fmt@v2.5.0...v2.7.0)
- [github.com/asottile/pyupgrade: v3.15.2 → v3.19.1](asottile/pyupgrade@v3.15.2...v3.19.1)
- [github.com/psf/black: 24.3.0 → 24.10.0](psf/black@24.3.0...24.10.0)
- [github.com/pre-commit/mirrors-mypy: v1.9.0 → v1.14.1](pre-commit/mirrors-mypy@v1.9.0...v1.14.1)
- [github.com/PyCQA/flake8: 7.0.0 → 7.1.1](PyCQA/flake8@7.0.0...7.1.1)
- [github.com/kynan/nbstripout: 0.7.1 → 0.8.1](kynan/nbstripout@0.7.1...0.8.1)
- [github.com/mgedmin/check-manifest: 0.49 → 0.50](mgedmin/check-manifest@0.49...0.50)
- [github.com/codespell-project/codespell: v2.2.6 → v2.3.0](codespell-project/codespell@v2.2.6...v2.3.0)

* fix issues detected by pre-commit

---------

Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Co-authored-by: Luigi Pertoldi <luigi.pertoldi@protonmail.com>

Author: pre-commit-ci[bot]

.pre-commit-config.yaml

@@ -6,7 +6,7 @@ ci:
 exclude: ^(attic|src/pygama/flow/datagroup.py)
 repos:
 - repo: https://github.com/pre-commit/pre-commit-hooks
-  rev: "v4.5.0"
+  rev: "v5.0.0"
   hooks:
   - id: check-added-large-files
   - id: check-case-conflict
@@ -25,7 +25,7 @@ repos:
   - id: trailing-whitespace
 
 - repo: https://github.com/asottile/setup-cfg-fmt
-  rev: "v2.5.0"
+  rev: "v2.7.0"
   hooks:
   - id: setup-cfg-fmt
 
@@ -35,18 +35,18 @@ repos:
   - id: isort
 
 - repo: https://github.com/asottile/pyupgrade
-  rev: "v3.15.2"
+  rev: "v3.19.1"
   hooks:
   - id: pyupgrade
     args: ["--py38-plus"]
 
 - repo: https://github.com/psf/black
-  rev: "24.3.0"
+  rev: "24.10.0"
   hooks:
   - id: black-jupyter
 
 - repo: https://github.com/pre-commit/mirrors-mypy
-  rev: "v1.9.0"
+  rev: "v1.14.1"
   hooks:
   - id: mypy
     files: src
@@ -59,7 +59,7 @@ repos:
     args: [--all]
 
 - repo: https://github.com/PyCQA/flake8
-  rev: "7.0.0"
+  rev: "7.1.1"
   hooks:
   - id: flake8
     additional_dependencies: [
@@ -70,20 +70,20 @@ repos:
     args: ["--extend-ignore", "E203,E501"]
 
 - repo: https://github.com/kynan/nbstripout
-  rev: "0.7.1"
+  rev: "0.8.1"
   hooks:
     - id: nbstripout
       args: ["--drop-empty-cells",
              "--extra-keys", "metadata.kernelspec metadata.language_info"]
 
 - repo: https://github.com/mgedmin/check-manifest
-  rev: "0.49"
+  rev: "0.50"
   hooks:
   - id: check-manifest
     stages: [manual]
 
 - repo: https://github.com/codespell-project/codespell
-  rev: "v2.2.6"
+  rev: "v2.3.0"
   hooks:
   - id: codespell
     additional_dependencies:

docs/source/notebooks/MathTutorial.ipynb

@@ -976,7 +976,7 @@
     "\n",
     "`args = [(dist1, [mu, sigma, tau]), (dist2, [mu, sigma])]`\n",
     "\n",
-    "Finally, we would intitalize (with the `fracs` flag in this case, more on that later) \n",
+    "Finally, we would initialize (with the `fracs` flag in this case, more on that later) \n",
     "\n",
     "`SumDists(args, area_frac_idxs = [frac_1], frac_flag = \"fracs\", parameter_names=[\"mu\", \"sigma\", \"tau\", \"frac_1\"])`\n",
     "\n",

src/pygama/pargen/dsp_optimize.py

@@ -119,7 +119,7 @@ def iterate_indices(self, indices):
         """iterate given indices [i1, i2, ...] by one.
         For easier iteration. The convention here is arbitrary, but its the
         order the arrays would be traversed in a series of nested for loops in
-        the order appearin in dims (first dimension is first for loop, etc):
+        the order appearing in dims (first dimension is first for loop, etc):
         Return False when the grid runs out of indices. Otherwise returns True.
         """
         for dim in reversed(range(self.get_n_dimensions())):