CPU Only issue

[Scottydoesntkno]

Hi,

I was wondering if someone could help me with this issue.

I can install anipose just fine with some workarounds but at the moment it's only using the CPU when I run anipose analyze command.

I have a 4070 super I would like to utilize the GPU has anyone found any solutions to this problem?

[YUNoSol]

Hi Scottydoesntkno

I have been problem solving different quirks with anipose for a bit, and I think I might have found a solution to your problem along the way

I'm also working with a 4070Ti super, and I found that if I installed anipose using the following commands, that it will utilize my GPU

conda create -n ENV-NAME python=3.7
conda activate ENV-NAME
conda install -c conda-forge cudatoolkit=11.2 cudnn=8.1.0
python -m pip install "tensorflow<2.11"
pip install deeplabcut
python -m pip uninstall opencv-python
python -m pip install anipose
conda install mayavi ffmpeg
pip install --upgrade apptools

In my experience, I found that anipose analyze does not work if you install wxpython, so it is omitted on purpose.

I got the cuda and tf installation lines from here: https://www.tensorflow.org/install/pip#windows-native

This is assuming that you have already installed the correct driver for your GPU

I have attached the console output from creating my environment below:
ap5_installation_output.txt

I hope this helps.

Best regards
Sol

[Scottydoesntkno]

Sol,

Now Im trying to get past label-3d error: KeyError: 'traitsui.toolkits.
Have you encountered this?

---

For anyone who runs into this OSError: [Errno 32] Broken pipe this is what I did.

conda remove ffmpeg
conda install -c conda-forge ffmpeg

It just makes sure the FFmpeg is installed with paths correctly recognized by conda and Python scripts.

Side Note: May be due that I'm working w/ .mp4 files instead .avi

Cheers!,
Miles

[YUNoSol]

Hi Miles!

I do not recall encountering the error you are mentioning (KeyError: 'traitsui.toolkits), but unfortunately I have not been able to get an environment that is capable of both anipose analyze and anipose labe-3d, so for now I have 2 separate environments. (label-3d requires wxpython, but if it is installed, anipose analyze stops working)

To be able to use anipose label-3d I made an environment using the following commands:

conda create -n ENV-NAME python=3.7 tensorflow=1.13.1
conda activate ENV-NAME
python -m pip install -U pip setuptools
pip install deeplabcut
conda install -c anaconda wxpython
python -m pip uninstall opencv-python
python -m pip install anipose
conda install mayavi ffmpeg
pip install --upgrade tensorflow==1.15.0
pip install numpy==1.19
pip install tensorflow==2.6
pip uninstall mayavi
conda uninstall vtk
pip install vtk==8.1.2
pip install mayavi==4.7.3
pip uninstall apptools
pip install --upgrade apptools

---

Thank you for the tip about OSError: [Errno 32] Broken pipe ! I encountered the same error when working on .MOV files (from the tutorial) so I do not think that it is the file-types fault, but your suggestion solved the problem, so thanks!

Best,
Sol

[Scottydoesntkno]

Hi Sol,

I know its been some time and thank you for your 3D environment install.

I have a question for you and I was wondering if you have any issue with label-3D function. As In after I run this function it only plots 2 out of 5 labels I made in 2D deeplabcut model. My calibration and triangulate runs just fine and with low error.

So if you have any advice it would amazing! Please feel DM me as well.

Miles