Compiling BIO_TP with new directory layout

[coffm049-2]

I hope you are well!

Thank you for the awesome instructions on getting FVCOM up and running. I've finally gotten the hydrodynamic portion of the model to a spot where we are ready to add in the BIO_TP model.

To that end, I've been having trouble linking the model. Here's what I have done so far.

1. Compiled BIO_TP from within FVCOM_BIO/BIO_TP
2. Copied fjulian.inc into the FVCOM/src directory
3. turned on FLAG_25 (-DBioGen) and specifid the BIOLIB and BIOINCS to be $(TOPDIR)/FVCOM_BIO/BIO_TP

Then, trying to make the full model I face the following error.

make: *** No rule to make target 'mod_bio_3D.F', needed by 'mod_bio_3D.o'.  Stop.

Am I on the right track here? Do you have any other suggestions on how to set this up?

Thank you! :)

[lisalenorelowe]

Hi Chris, @coffm049-2

Probably it would be good to meet, so I can look at your terminal and see the directories. If you compiled FVCOM, the mod_bio_3D.F should be in the directory where you did 'make' to build 'fvcom'. Did you run the model with just the hydro? That is the first step. I can meet most times this week, send me an email. (If we figure anything out about BIO_TP, I will add them to these comments later.)

Lisa

[lisalenorelowe]

@coffm049-2 I made a tag and a release for the 'pre-WQEM' version. This current development branch is buggy, not tested, totally work in progress.

[coffm049-2]

@lisalenorelowe
I think a meeting would be very helpful. I'll follow up with an email.

For clarity, I had BIO_TP in the FVCOM "src" directory where I make from. But, I think it will be clearer to see what I've done in person.

Thank you.