minor fix

Author: maximiliani

.github/workflows/CI.yml

@@ -12,27 +12,27 @@ on:
     branches: [main , dev]
 
 jobs:
+#  build:
+#    runs-on: ubuntu-latest
+#    strategy:
+#      matrix:
+#        jdk: [ 17 ]
+#    steps:
+#      - name: Checkout repo
+#        uses: actions/checkout@v2
+#      - name: Set up OpenJDK
+#        uses: actions/setup-java@v1
+#        with:
+#          java-version: ${{ matrix.jdk }}
+#      - name: Install python
+#        run: sudo apt install -y python3 python3-setuptools python3-pip
+#      - name: Update pip
+#        run: pip3 install --upgrade pip
+#      - name: Grant execute permission for gradlew
+#        run: chmod +x gradlew
+#      - name: Build with Gradle
+#        run: ./gradlew clean build
   build:
-    runs-on: ubuntu-latest
-    strategy:
-      matrix:
-        jdk: [ 17 ]
-    steps:
-      - name: Checkout repo
-        uses: actions/checkout@v2
-      - name: Set up OpenJDK
-        uses: actions/setup-java@v1
-        with:
-          java-version: ${{ matrix.jdk }}
-      - name: Install python
-        run: sudo apt install -y python3 python3-setuptools python3-pip
-      - name: Update pip
-        run: pip3 install --upgrade pip
-      - name: Grant execute permission for gradlew
-        run: chmod +x gradlew
-      - name: Build with Gradle
-        run: ./gradlew clean build
-  test:
     strategy:
       matrix:
         os: [ubuntu-latest, windows-latest, macos-latest]
@@ -51,7 +51,7 @@ jobs:
         with:
           python-version: ${{ matrix.python-version }}
       - name: Get Python location
-        run: python -c "import os, sys; print(os.path.dirname(sys.executable))"
+        run: python -c "import os, sys; print(sys.executable)"
       - name: Update pip
         run: python3 -m pip install --upgrade pip
       - name: Grant execute permission for gradlew
@@ -60,10 +60,10 @@ jobs:
         run: ./gradlew clean
       - if: matrix.os == 'windows-latest'
         name: Test with Gradle on Windows
-        run: ./gradlew test -DapplicationProperties="src\test\resources\test-config\application-test-windows.properties"
+        run: ./gradlew build -DapplicationProperties="src\test\resources\test-config\application-test-windows.properties"
       - if: matrix.os != 'windows-latest'
         name: Test with Gradle on ${{ matrix.os }}
-        run: ./gradlew test -DapplicationProperties="src/test/resources/test-config/application-test.properties"
+        run: ./gradlew build -DapplicationProperties="src/test/resources/test-config/application-test.properties"
       - name: Generate report
         run: ./gradlew jacocoTestReport
       - name: Codecov

src/main/resources/application.properties

@@ -33,7 +33,7 @@ spring.jpa.hibernate.ddl-auto=update
 # Mapping-Service specific settings
 ##################################################
 # Absolute path to the local python interpreter
-mapping-service.pythonLocation=file:///usr/bin/python4
+mapping-service.pythonLocation=file:///usr/bin/python3
 
 # Absolute path to the local gemma mappings folder
 mapping-service.mappingSchemasLocation=file:///tmp/mapping-service/mappingSchemas