Merge pull request #3 from maximilianiKIT/dev

First working version

Author: maximiliani

.github/workflows/CI.yml

@@ -0,0 +1,40 @@
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+name: Java CI
+
+on:
+  push:
+    branches: [ main ]
+  pull_request:
+    branches: "*"
+
+jobs:
+  build-jdk:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        jdk: [ 17 ]
+    steps:
+      - name: Checkout repo
+        uses: actions/checkout@v2
+      - name: Set up OpenJDK
+        uses: actions/setup-java@v1
+        with:
+          java-version: ${{ matrix.jdk }}
+      - name: Install python
+        run: sudo apt install -y python3 python3-setuptools python3-pip
+      - name: Update pip
+        run: pip3 install --upgrade pip
+      - name: Install libraries via pip (xmltodict and wget)
+        run: pip3 install xmltodict wget
+      - name: Grant execute permission for gradlew
+        run: chmod +x gradlew
+      - name: Build with Gradle
+        run: ./gradlew clean check jacocoTestReport
+      - name: Codecov
+        uses: codecov/codecov-action@v1
+        with:
+          files: ./build/reports/jacoco/test/jacocoTestReport.xml #optional

.github/workflows/gradle.yml

@@ -1,25 +1,25 @@
-HELP.md
-.gradle
-build/
-!gradle/wrapper/gradle-wrapper.jar
-!**/src/main/**/build/
-!**/src/test/**/build/
-
-### Spring boot ###
-**/application.properties
-
-### Gemma/python ###
-/gemma
-**/__pycache__
-
-### STS ###
-.apt_generated
-.classpath
-.factorypath
-.project
-.settings
-.springBeans
-.sts4-cache
+#HELP.md
+#.gradle
+#build/
+#!gradle/wrapper/gradle-wrapper.jar
+#!**/src/main/**/build/
+#!**/src/test/**/build/
+#
+#### Spring boot ###
+#**/application.properties
+#
+#### Gemma/python ###
+#/gemma
+#**/__pycache__
+#
+#### STS ###
+#.apt_generated
+#.classpath
+#.factorypath
+#.project
+#.settings
+#.springBeans
+#.sts4-cache
 
 ### IntelliJ IDEA ###
 .idea
@@ -41,4 +41,197 @@ out/
 .vscode/
 
 ### Other IDEs and Tools ###
-bin/
+bin/
+
+
+
+# Created by https://www.toptal.com/developers/gitignore/api/intellij+all,java,macos,gradle,linux
+# Edit at https://www.toptal.com/developers/gitignore?templates=intellij+all,java,macos,gradle,linux
+
+### Intellij+all ###
+# Covers JetBrains IDEs: IntelliJ, RubyMine, PhpStorm, AppCode, PyCharm, CLion, Android Studio, WebStorm and Rider
+# Reference: https://intellij-support.jetbrains.com/hc/en-us/articles/206544839
+
+# User-specific stuff
+.idea/**/workspace.xml
+.idea/**/tasks.xml
+.idea/**/usage.statistics.xml
+.idea/**/dictionaries
+.idea/**/shelf
+
+# AWS User-specific
+.idea/**/aws.xml
+
+# Generated files
+.idea/**/contentModel.xml
+
+# Sensitive or high-churn files
+.idea/**/dataSources/
+.idea/**/dataSources.ids
+.idea/**/dataSources.local.xml
+.idea/**/sqlDataSources.xml
+.idea/**/dynamic.xml
+.idea/**/uiDesigner.xml
+.idea/**/dbnavigator.xml
+
+# Gradle
+.idea/**/gradle.xml
+.idea/**/libraries
+
+# Gradle and Maven with auto-import
+# When using Gradle or Maven with auto-import, you should exclude module files,
+# since they will be recreated, and may cause churn.  Uncomment if using
+# auto-import.
+# .idea/artifacts
+# .idea/compiler.xml
+# .idea/jarRepositories.xml
+# .idea/modules.xml
+# .idea/*.iml
+# .idea/modules
+# *.iml
+# *.ipr
+
+# CMake
+cmake-build-*/
+
+# Mongo Explorer plugin
+.idea/**/mongoSettings.xml
+
+# File-based project format
+*.iws
+
+# IntelliJ
+out/
+
+# mpeltonen/sbt-idea plugin
+.idea_modules/
+
+# JIRA plugin
+atlassian-ide-plugin.xml
+
+# Cursive Clojure plugin
+.idea/replstate.xml
+
+# Crashlytics plugin (for Android Studio and IntelliJ)
+com_crashlytics_export_strings.xml
+crashlytics.properties
+crashlytics-build.properties
+fabric.properties
+
+# Editor-based Rest Client
+.idea/httpRequests
+
+# Android studio 3.1+ serialized cache file
+.idea/caches/build_file_checksums.ser
+
+### Intellij+all Patch ###
+# Ignores the whole .idea folder and all .iml files
+# See https://github.com/joeblau/gitignore.io/issues/186 and https://github.com/joeblau/gitignore.io/issues/360
+
+.idea/
+
+# Reason: https://github.com/joeblau/gitignore.io/issues/186#issuecomment-249601023
+
+*.iml
+modules.xml
+.idea/misc.xml
+*.ipr
+
+# Sonarlint plugin
+.idea/sonarlint
+
+### Java ###
+# Compiled class file
+*.class
+
+# Log file
+*.log
+
+# BlueJ files
+*.ctxt
+
+# Mobile Tools for Java (J2ME)
+.mtj.tmp/
+
+# Package Files #
+*.jar
+*.war
+*.nar
+*.ear
+*.zip
+*.tar.gz
+*.rar
+
+# virtual machine crash logs, see http://www.java.com/en/download/help/error_hotspot.xml
+hs_err_pid*
+
+### Linux ###
+*~
+
+# temporary files which can be created if a process still has a handle open of a deleted file
+.fuse_hidden*
+
+# KDE directory preferences
+.directory
+
+# Linux trash folder which might appear on any partition or disk
+.Trash-*
+
+# .nfs files are created when an open file is removed but is still being accessed
+.nfs*
+
+### macOS ###
+# General
+.DS_Store
+.AppleDouble
+.LSOverride
+
+# Icon must end with two \r
+Icon
+
+
+# Thumbnails
+._*
+
+# Files that might appear in the root of a volume
+.DocumentRevisions-V100
+.fseventsd
+.Spotlight-V100
+.TemporaryItems
+.Trashes
+.VolumeIcon.icns
+.com.apple.timemachine.donotpresent
+
+# Directories potentially created on remote AFP share
+.AppleDB
+.AppleDesktop
+Network Trash Folder
+Temporary Items
+.apdisk
+
+### Gradle ###
+.gradle
+build/
+
+# Ignore Gradle GUI config
+gradle-app.setting
+
+# Avoid ignoring Gradle wrapper jar file (.jar files are usually ignored)
+!gradle-wrapper.jar
+
+# Cache of project
+.gradletasknamecache
+
+# # Work around https://youtrack.jetbrains.com/issue/IDEA-116898
+# gradle/wrapper/gradle-wrapper.properties
+
+### Gradle Patch ###
+**/build/
+
+# Eclipse Gradle plugin generated files
+# Eclipse Core
+.project
+# JDT-specific (Eclipse Java Development Tools)
+.classpath
+
+# End of https://www.toptal.com/developers/gitignore/api/intellij+all,java,macos,gradle,linux

.gitignore

@@ -20,12 +20,11 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 First version supporting registering of mappings (Gemma only)
 and mapping of metadata documents delivered by RabbitMQ
 ### Added
-- Registration of mapping documents. 
+- Registration of mapping documents.
 - Mapping of metadata documents with Gemma
 - Ingest to elasticsearch
 
 [Unreleased]: https://github.com/kit-data-manager/indexing-service/compare/v0.0.4...HEAD
 [0.0.4]: https://github.com/kit-data-manager/indexing-service/compare/v0.0.3...v0.0.4
 [0.0.3]: https://github.com/kit-data-manager/indexing-service/compare/v0.0.2...v0.0.3
 [0.0.2]: https://github.com/kit-data-manager/metastore2/indexing-service/tag/v0.0.2
-