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Description
Hi !
Thanks for this wonderful package.
I noticed that when add.all and pval.method were both on TRUE on the ggsurvplot, the pval.method line is gone. Is there a way to put it back on or to correct the ggsurvplot_add_all()
function?
Thanks !
sessioninfo::session_info()
─ Session info ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
setting value
version R version 4.4.2 (2024-10-31)
os Ubuntu 22.04.5 LTS
system x86_64, linux-gnu
ui RStudio
language (EN)
collate C.UTF-8
ctype C.UTF-8
tz Europe/Paris
date 2025-02-03
rstudio 2024.12.0+467 Kousa Dogwood (desktop)
pandoc 3.4 @ /usr/bin/pandoc
─ Packages ──────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────────
package * version date (UTC) lib source
abind 1.4-8 2024-09-12 [1] CRAN (R 4.4.1)
annotate 1.82.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.2)
AnnotationDbi 1.66.0 2024-05-01 [1] Bioconductor 3.19 (R 4.4.2)
backports 1.5.0 2024-05-23 [1] CRAN (R 4.4.1)
beachmat 2.20.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.1)
Biobase 2.64.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.1)
BiocGenerics 0.50.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.1)
BiocParallel 1.38.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.1)
BiocSingular 1.20.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.1)
Biostrings 2.72.1 2024-06-02 [1] Bioconductor 3.19 (R 4.4.2)
bit 4.5.0.1 2024-12-03 [1] CRAN (R 4.4.2)
bit64 4.6.0-1 2025-01-16 [1] CRAN (R 4.4.2)
blob 1.2.4 2023-03-17 [1] CRAN (R 4.4.1)
broom 1.0.7 2024-09-26 [1] CRAN (R 4.4.1)
cachem 1.1.0 2024-05-16 [1] CRAN (R 4.4.1)
car 3.1-3 2024-09-27 [1] CRAN (R 4.4.1)
carData 3.0-5 2022-01-06 [1] CRAN (R 4.4.1)
cellranger 1.1.0 2016-07-27 [1] CRAN (R 4.4.1)
cli 3.6.3 2024-06-21 [1] CRAN (R 4.4.1)
codetools 0.2-19 2023-02-01 [4] CRAN (R 4.2.2)
colorspace 2.1-1 2024-07-26 [1] CRAN (R 4.4.1)
commonmark 1.9.2 2024-10-04 [1] CRAN (R 4.4.1)
crayon 1.5.3 2024-06-20 [1] CRAN (R 4.4.1)
data.table 1.16.4 2024-12-06 [1] CRAN (R 4.4.2)
DBI 1.2.3 2024-06-02 [1] CRAN (R 4.4.1)
DelayedArray 0.30.1 2024-05-07 [1] Bioconductor 3.19 (R 4.4.1)
dplyr * 1.1.4 2023-11-17 [1] CRAN (R 4.4.1)
evaluate 1.0.3 2025-01-10 [1] CRAN (R 4.4.2)
exactRankTests 0.8-35 2022-04-26 [1] CRAN (R 4.4.2)
farver 2.1.2 2024-05-13 [1] CRAN (R 4.4.1)
fastmap 1.2.0 2024-05-15 [1] CRAN (R 4.4.1)
forcats * 1.0.0 2023-01-29 [1] CRAN (R 4.4.1)
Formula 1.2-5 2023-02-24 [1] CRAN (R 4.4.1)
generics 0.1.3 2022-07-05 [1] CRAN (R 4.4.1)
GenomeInfoDb 1.40.1 2024-05-24 [1] Bioconductor 3.19 (R 4.4.1)
GenomeInfoDbData 1.2.12 2024-09-10 [1] Bioconductor
GenomicRanges 1.56.2 2024-10-09 [1] Bioconductor 3.19 (R 4.4.2)
ggplot2 * 3.5.1 2024-04-23 [1] CRAN (R 4.4.1)
ggpubr * 0.6.0 2023-02-10 [1] CRAN (R 4.4.1)
ggsci 3.2.0 2024-06-18 [1] CRAN (R 4.4.1)
ggsignif 0.6.4 2022-10-13 [1] CRAN (R 4.4.1)
ggtext 0.1.2 2022-09-16 [1] CRAN (R 4.4.2)
glue 1.8.0 2024-09-30 [1] CRAN (R 4.4.1)
graph 1.82.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.2)
gridExtra 2.3 2017-09-09 [1] CRAN (R 4.4.1)
gridtext 0.1.5 2022-09-16 [1] CRAN (R 4.4.2)
GSEABase 1.66.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.2)
GSVA * 1.52.3 2024-06-09 [1] Bioconductor 3.19 (R 4.4.2)
gtable 0.3.6 2024-10-25 [1] CRAN (R 4.4.2)
HDF5Array 1.32.1 2024-08-11 [1] Bioconductor 3.19 (R 4.4.1)
hms 1.1.3 2023-03-21 [1] CRAN (R 4.4.1)
httr 1.4.7 2023-08-15 [1] CRAN (R 4.4.1)
IRanges 2.38.1 2024-07-03 [1] Bioconductor 3.19 (R 4.4.1)
irlba 2.3.5.1 2022-10-03 [1] CRAN (R 4.4.1)
jsonlite 1.8.9 2024-09-20 [1] CRAN (R 4.4.1)
KEGGREST 1.44.1 2024-06-19 [1] Bioconductor 3.19 (R 4.4.2)
km.ci 0.5-6 2022-04-06 [1] CRAN (R 4.4.2)
KMsurv 0.1-5 2012-12-03 [1] CRAN (R 4.4.2)
knitr 1.49 2024-11-08 [1] CRAN (R 4.4.2)
labeling 0.4.3 2023-08-29 [1] CRAN (R 4.4.1)
lattice 0.22-5 2023-10-24 [4] CRAN (R 4.3.1)
librarian 1.8.1 2021-07-12 [1] CRAN (R 4.4.2)
lifecycle 1.0.4 2023-11-07 [1] CRAN (R 4.4.1)
lubridate * 1.9.4 2024-12-08 [1] CRAN (R 4.4.2)
magick 2.8.5 2024-09-20 [1] CRAN (R 4.4.2)
magrittr 2.0.3 2022-03-30 [1] CRAN (R 4.4.1)
markdown 1.13 2024-06-04 [1] CRAN (R 4.4.2)
Matrix 1.7-1 2024-10-18 [4] CRAN (R 4.4.1)
MatrixGenerics 1.16.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.1)
matrixStats 1.5.0 2025-01-07 [1] CRAN (R 4.4.2)
maxstat * 0.7-25 2017-03-02 [1] CRAN (R 4.4.2)
memoise 2.0.1 2021-11-26 [1] CRAN (R 4.4.1)
munsell 0.5.1 2024-04-01 [1] CRAN (R 4.4.1)
mvtnorm 1.3-3 2025-01-10 [1] CRAN (R 4.4.2)
pillar 1.10.1 2025-01-07 [1] CRAN (R 4.4.2)
pkgconfig 2.0.3 2019-09-22 [1] CRAN (R 4.4.1)
png 0.1-8 2022-11-29 [1] CRAN (R 4.4.1)
purrr * 1.0.2 2023-08-10 [1] CRAN (R 4.4.1)
R6 2.5.1 2021-08-19 [1] CRAN (R 4.4.1)
Rcpp 1.0.14 2025-01-12 [1] CRAN (R 4.4.2)
readr * 2.1.5 2024-01-10 [1] CRAN (R 4.4.1)
readxl 1.4.3 2023-07-06 [1] CRAN (R 4.4.1)
rhdf5 2.48.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.1)
rhdf5filters 1.16.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.1)
Rhdf5lib 1.26.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.1)
rjson 0.2.23 2024-09-16 [1] CRAN (R 4.4.1)
rlang 1.1.5 2025-01-17 [1] CRAN (R 4.4.2)
RSQLite 2.3.9 2024-12-03 [1] CRAN (R 4.4.2)
rstatix 0.7.2 2023-02-01 [1] CRAN (R 4.4.1)
rstudioapi 0.17.1 2024-10-22 [1] CRAN (R 4.4.2)
rsvd 1.0.5 2021-04-16 [1] CRAN (R 4.4.1)
S4Arrays 1.4.1 2024-05-20 [1] Bioconductor 3.19 (R 4.4.1)
S4Vectors 0.42.1 2024-07-03 [1] Bioconductor 3.19 (R 4.4.1)
ScaledMatrix 1.12.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.1)
scales 1.3.0 2023-11-28 [1] CRAN (R 4.4.1)
sessioninfo 1.2.2 2021-12-06 [1] CRAN (R 4.4.1)
SingleCellExperiment 1.26.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.1)
SparseArray 1.4.8 2024-05-24 [1] Bioconductor 3.19 (R 4.4.1)
sparseMatrixStats 1.16.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.1)
SpatialExperiment 1.14.0 2024-05-01 [1] Bioconductor 3.19 (R 4.4.2)
stringi 1.8.4 2024-05-06 [1] CRAN (R 4.4.1)
stringr * 1.5.1 2023-11-14 [1] CRAN (R 4.4.1)
SummarizedExperiment 1.34.0 2024-05-01 [1] Bioconductor 3.19 (R 4.4.1)
survival * 3.7-0 2024-06-05 [4] CRAN (R 4.4.0)
survminer * 0.5.0 2024-10-30 [1] CRAN (R 4.4.2)
survMisc 0.5.6 2022-04-07 [1] CRAN (R 4.4.2)
tibble * 3.2.1 2023-03-20 [1] CRAN (R 4.4.1)
tidyr * 1.3.1 2024-01-24 [1] CRAN (R 4.4.1)
tidyselect 1.2.1 2024-03-11 [1] CRAN (R 4.4.1)
tidyverse * 2.0.0 2023-02-22 [1] CRAN (R 4.4.1)
timechange 0.3.0 2024-01-18 [1] CRAN (R 4.4.1)
tzdb 0.4.0 2023-05-12 [1] CRAN (R 4.4.1)
UCSC.utils 1.0.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.1)
vctrs 0.6.5 2023-12-01 [1] CRAN (R 4.4.1)
vroom 1.6.5 2023-12-05 [1] CRAN (R 4.4.1)
withr 3.0.2 2024-10-28 [1] CRAN (R 4.4.2)
xfun 0.50 2025-01-07 [1] CRAN (R 4.4.2)
XML 3.99-0.18 2025-01-01 [1] CRAN (R 4.4.2)
xml2 1.3.6 2023-12-04 [1] CRAN (R 4.4.1)
xtable 1.8-4 2019-04-21 [1] CRAN (R 4.4.1)
XVector 0.44.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.1)
zlibbioc 1.50.0 2024-04-30 [1] Bioconductor 3.19 (R 4.4.1)
zoo 1.8-12 2023-04-13 [1] CRAN (R 4.4.1)
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