methylation_plots.R error

[athulmenon]

methylation_plots.R make_emissions_figure panelA_file panelB1_file panelB2_file panelC1_file panelC2_file

While running methylation plot i am getting following error:

Loading required package: ggplot2 Loading required package: stringr Loading required package: data.table Read 101508979 rows and 7 (of 7) columns from 3.824 GB file in 00:01:47 Error in file(file, "rt") : cannot open the connection Calls: make_emissions_figure -> read.table -> file In addition: Warning message: In file(file, "rt") : cannot open file 'NA': No such file or directory Execution halted

[jts]

Can you show the first 10 lines of each input file?