Merge pull request FABLE-3DXRD#466 from jadball/master

Small bugfixes with unitcell Phases class and 7_stack_layers notebook

Author: jonwright

ImageD11/nbGui/S3DXRD/7_stack_layers.ipynb

@@ -160,7 +160,7 @@
     "    elif stack_combined:\n",
     "        ds.tensor_map = TensorMap.from_h5(os.path.join(ds.analysispath, f'{ds.sample}_{ds.dset}_tmap_combined.h5'))\n",
     "    elif stack_refined:\n",
-    "        ds.tensor_map = TensorMap.from_h5(os.path.join(ds.analysispath, f'{ds.sample}_{ds.dset}_refiend_tmap_{phase_str}.h5'))\n",
+    "        ds.tensor_map = TensorMap.from_h5(os.path.join(ds.analysispath, f'{ds.sample}_{ds.dset}_refined_tmap_{phase_str}.h5'))\n",
     "    else:\n",
     "        ds.tensor_map = TensorMap.from_h5(os.path.join(ds.analysispath, f'{ds.sample}_{ds.dset}_tmap_{phase_str}.h5'))\n",
     "\n",

ImageD11/unitcell.py

@@ -166,8 +166,8 @@ class Phases(AnalysisSchema):
     Reads analysis parameters from file
     Contains self.unitcells which is a dict of unitcell objects
     """
-    def __init__(self, filename):
-        super(Phases, self).__init__(filename)
+    def __init__(self, filename=None):
+        super(Phases, self).__init__(filename=filename)
         self.unitcells = {}
         if filename is not None:
             self.get_unitcells()