# biodivMapR2 v2.3.10

## change
- add option "BIGTIFF=IF_SAFER" when calling sf::gdal_utils to produce mosaics

Author: jbferet

DESCRIPTION

@@ -1,6 +1,6 @@
 Package: biodivMapR
 Title: biodivMapR: an R package for a- and ß-diversity mapping using remotely-sensed images
-Version: 2.3.9
+Version: 2.3.10
 Authors@R: c(person(given = "Jean-Baptiste", 
 					family = "Feret", 
 					email = "jb.feret@teledetection.fr", 

NAMESPACE

@@ -16,7 +16,7 @@ export(center_reduce)
 export(check_data)
 export(clean_NAsInf)
 export(compute_bc_diss)
-export(compute_mask_IQR)
+export(compute_mask_iqr)
 export(compute_mask_iqr_tiles)
 export(compute_nn_from_ordination)
 export(continuum_removal)

NEWS.md

@@ -1,3 +1,7 @@
+# biodivMapR2 v2.3.10
+## change
+- add option "BIGTIFF=IF_SAFER" when calling sf::gdal_utils to produce mosaics
+
 # biodivMapR2 v2.3.9
 ## fix
 - create output_dir if does not exist when calling biodivMapR_full

R/compute_mask_IQR.R

@@ -10,7 +10,7 @@
 #' @importFrom terra rast values names varnames writeRaster
 #' @export
 
-compute_mask_IQR <- function(input_raster_path,
+compute_mask_iqr <- function(input_raster_path,
                              output_mask_path,
                              input_mask_path = NULL,
                              weightIRQ = 3,

R/mosaic_tiles.R

@@ -26,7 +26,7 @@ mosaic_tiles <- function(pattern, dir_path, vrt_save, siteName = NULL,
   if (!file.exists(mosaic_path) | overwrite)
     sf::gdal_utils(util = 'translate', source = output_vrt_path,
                    destination = mosaic_path,
-                   options = c("-co", "COMPRESS=LZW"))
+                   co = c("COMPRESS=LZW", "BIGTIFF=IF_SAFER"))
 
   # delete vrt
   file.remove(output_vrt_path)

man/compute_mask_IQR.Rd

@@ -159,7 +159,7 @@ SI_path <- spectralindices_from_raster(input_raster_path = input_raster_path,
 # (e.g. negative reflectance or extremely low values used in ratio)
 # this optional step ensures that erroneous vegetation indices are discarded. 
 mask_path_SI <- file.path(output_dir_SI, 'Mask_update_IQR.tif')
-compute_mask_IQR(input_raster_path = SI_path,
+compute_mask_iqr(input_raster_path = SI_path,
                  output_mask_path = mask_path_SI,
                  input_mask_path = input_mask_path)
 ```